EsuBft2436_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2436_4a-0001
Unique NameEsuBft2436_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:194762..195307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2436_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_4aEsuBft2436_4aEctocarpus subulatus male Bft15bgeneScaffold_544 194762..195307 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_4a-0001-exonEsuBft2436_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 194762..195307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_4a-0001-cdsEsuBft2436_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 194762..195307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2436_4a-0001EsuBft2436_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 194762..195307 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2436_4a-0001 ID=EsuBft2436_4a-0001|Name=EsuBft2436_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=546bp|location=Sequence derived from alignment at Scaffold_544:194762..195307+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTCCCTCCTTCAATACACGCAGAGGAGGACAAGATGGACGCTGT
CATGACCCTCATGAACCCGGCCTATCGCCTCAAATACCACCGCCAGACCT
ACGGCGACGACACGTACCAAGTCATGCTGCGTGTGGCGTTNCACTGCTGT
CATTTCCCTCTTCTGTCGTTGTCCATGTTGCTCCCTCCTTCAATACACGC
AGAGGAGGACAAGATGGACGCTGTCATGACCCTCATGAACCCGGCCTATC
ACCTCAACTACCACAGCCAGAACTACGGCGACGACGCGTACCAGGTCATG
CTGCCTGTGGCGTCCACGCTGGAGGAAGTTGACACCCTGCTACCTCCTCT
CCCCGTGGATGGTCAGGCCGGCGCTCCCAAGAAACTCGGGCCGAAAAAGT
TCAAGAGGATCGCGGGGCGCGGGGACAAGTTCGCTTCGTCGTCGTTCAAC
ACGCGAGTTTCTGAACTCGGCCCGGCCGCATCCGGAACCACGGCGGCTCC
CTCTCTGTCGCAGGGGGGTGCCACAGCGACTCCCTCTTCGTCATAG
back to top

protein sequence of EsuBft2436_4a-0001

>EsuBft2436_4 ID=EsuBft2436_4|Name=EsuBft2436_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MLLPPSIHAEEDKMDAVMTLMNPAYRLKYHRQTYGDDTYQVMLRVAXHCC
HFPLLSLSMLLPPSIHAEEDKMDAVMTLMNPAYHLNYHSQNYGDDAYQVM
LPVASTLEEVDTLLPPLPVDGQAGAPKKLGPKKFKRIAGRGDKFASSSFN
TRVSELGPAASGTTAAPSLSQGGATATPSSS
back to top

mRNA from alignment at Scaffold_544:194762..195307+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2436_4a-0001 ID=EsuBft2436_4a-0001|Name=EsuBft2436_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=546bp|location=Sequence derived from alignment at Scaffold_544:194762..195307+ (Ectocarpus subulatus male Bft15b)
ATGTTGCTCCCTCCTTCAATACACGCAGAGGAGGACAAGATGGACGCTGT
CATGACCCTCATGAACCCGGCCTATCGCCTCAAATACCACCGCCAGACCT
ACGGCGACGACACGTACCAAGTCATGCTGCGTGTGGCGTTNCACTGCTGT
CATTTCCCTCTTCTGTCGTTGTCCATGTTGCTCCCTCCTTCAATACACGC
AGAGGAGGACAAGATGGACGCTGTCATGACCCTCATGAACCCGGCCTATC
ACCTCAACTACCACAGCCAGAACTACGGCGACGACGCGTACCAGGTCATG
CTGCCTGTGGCGTCCACGCTGGAGGAAGTTGACACCCTGCTACCTCCTCT
CCCCGTGGATGGTCAGGCCGGCGCTCCCAAGAAACTCGGGCCGAAAAAGT
TCAAGAGGATCGCGGGGCGCGGGGACAAGTTCGCTTCGTCGTCGTTCAAC
ACGCGAGTTTCTGAACTCGGCCCGGCCGCATCCGGAACCACGGCGGCTCC
CTCTCTGTCGCAGGGGGGTGCCACAGCGACTCCCTCTTCGTCATAG
back to top

Coding sequence (CDS) from alignment at Scaffold_544:194762..195307+

>EsuBft2436_4a-0001 ID=EsuBft2436_4a-0001|Name=EsuBft2436_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_544:194762..195307+ (Ectocarpus subulatus male Bft15b)
ATGTTGCTCCCTCCTTCAATACACGCAGAGGAGGACAAGATGGACGCTGT
CATGACCCTCATGAACCCGGCCTATCGCCTCAAATACCACCGCCAGACCT
ACGGCGACGACACGTACCAAGTCATGCTGCGTGTGGCGTTNCACTGCTGT
CATTTCCCTCTTCTGTCGTTGTCCATGTTGCTCCCTCCTTCAATACACGC
AGAGGAGGACAAGATGGACGCTGTCATGACCCTCATGAACCCGGCCTATC
ACCTCAACTACCACAGCCAGAACTACGGCGACGACGCGTACCAGGTCATG
CTGCCTGTGGCGTCCACGCTGGAGGAAGTTGACACCCTGCTACCTCCTCT
CCCCGTGGATGGTCAGGCCGGCGCTCCCAAGAAACTCGGGCCGAAAAAGT
TCAAGAGGATCGCGGGGCGCGGGGACAAGTTCGCTTCGTCGTCGTTCAAC
ACGCGAGTTTCTGAACTCGGCCCGGCCGCATCCGGAACCACGGCGGCTCC
CTCTCTGTCGCAGGGGGGTGCCACAGCGACTCCCTCTTCGTCATAG
back to top