EsuBft2436_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2436_5a-0001
Unique Name	EsuBft2436_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_544	contig	Scaffold_544:192492..193635 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2436_5
Protein domains	Coil
Protein domains	PF14223
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	114
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2436_5a	EsuBft2436_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_544 192492..193635 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2436_5a-0001-exon	EsuBft2436_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_544 192492..193635 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2436_5a-0001-cds	EsuBft2436_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_544 192492..193379 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2436_5a-0001-exon	agat-five_prime_utr-6290	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_544 193380..193635 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2436_5a-0001	EsuBft2436_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_544 192492..193379 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_544:192492..193635-
coding sequence from alignment at Scaffold_544:192492..193635-

spliced messenger RNA

>EsuBft2436_5a-0001 ID=EsuBft2436_5a-0001|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1144bp|location=Sequence derived from alignment at Scaffold_544:192492..193635- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCTACCGCACCCAAACACAATACAATATATTGTAAGGCCTGGTGTTGGT
AGTGGGTATTGGCGTATGAGCAGTGGGAGCTGGGCCATCGGGGCAGCGGA
CACCATTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTG
CATAGCTGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTATAG
CTGGGACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAG
TTTGATATGTCTGGAACGGAGGAGGACGCAACTCTGAGCGCGAGGTTGGA
TGAGGCGCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCA
AAGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCA
CCTGCCGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCTTGGAGGGGC
TTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATG
GCGGTACTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAATT
CCTGTGCCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAACTG
GCGGAGACGCTTTCTGGCCTACGTGGGCAACCACAATCTCCAGCACACAA
TCTTTGGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATAC
TTGACACGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATG
GAGTTTTATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACAACCTGT
ACTCTTGCCATTCCGTGGCAGAGGCGTGGAGGATGATGGAGGATTGGTAT
TTGCCGAACCACCCAGCTGATTGTCAGCTCCTCGTCGCCGAGCTAGACAA
TATAACCATGAGTGATGATGAGGACCTCAAGCTTTTCTTCTCGCGCGTCG
CACAACTGGAGACCAAGTTACGGGCTGTGGGCATTGCTAAGAGTGACCAG
GAAGTTGTGCAGATCCTTGTGCGCCAACTCCCCGCACGCTGCGATGTCGA
GAAGCGCATAGTCTTTCCAAGCGTGATTTATCCCGCGCTGAGTTGCAGGA
CATCGTGCGTGGTCGATATGCCACGCTCAAGGCCAGCGAGATGA

protein sequence of EsuBft2436_5a-0001

>EsuBft2436_5 ID=EsuBft2436_5|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=295bp
MSGTEEDATLSARLDEALRAIEEAKAETKEAKAETEELRAAQRRSAGAPA
GSSSGGDGLVALGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRIPV
PRIPPNCTADTFLNWRRRFLAYVGNHNLQHTIFGSAEVPVVSCQDEGYLT
RQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLP
NHPADCQLLVAELDNITMSDDEDLKLFFSRVAQLETKLRAVGIAKSDQEV
VQILVRQLPARCDVEKRIVFPSVIYPALSCRTSCVVDMPRSRPAR

mRNA from alignment at Scaffold_544:192492..193635-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2436_5a-0001 ID=EsuBft2436_5a-0001|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1144bp|location=Sequence derived from alignment at Scaffold_544:192492..193635- (Ectocarpus subulatus male Bft15b)
AGCTACCGCACCCAAACACAATACAATATATTGTAAGGCCTGGTGTTGGT
AGTGGGTATTGGCGTATGAGCAGTGGGAGCTGGGCCATCGGGGCAGCGGA
CACCATTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTG
CATAGCTGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTATAG
CTGGGACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAG
TTTGATATGTCTGGAACGGAGGAGGACGCAACTCTGAGCGCGAGGTTGGA
TGAGGCGCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCA
AAGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCA
CCTGCCGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCTTGGAGGGGC
TTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATG
GCGGTACTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAATT
CCTGTGCCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAACTG
GCGGAGACGCTTTCTGGCCTACGTGGGCAACCACAATCTCCAGCACACAA
TCTTTGGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATAC
TTGACACGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATG
GAGTTTTATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACAACCTGT
ACTCTTGCCATTCCGTGGCAGAGGCGTGGAGGATGATGGAGGATTGGTAT
TTGCCGAACCACCCAGCTGATTGTCAGCTCCTCGTCGCCGAGCTAGACAA
TATAACCATGAGTGATGATGAGGACCTCAAGCTTTTCTTCTCGCGCGTCG
CACAACTGGAGACCAAGTTACGGGCTGTGGGCATTGCTAAGAGTGACCAG
GAAGTTGTGCAGATCCTTGTGCGCCAACTCCCCGCACGCTGCGATGTCGA
GAAGCGCATAGTCTTTCCAAGCGTGATTTATCCCGCGCTGAGTTGCAGGA
CATCGTGCGTGGTCGATATGCCACGCTCAAGGCCAGCGAGATGA

Coding sequence (CDS) from alignment at Scaffold_544:192492..193635-

>EsuBft2436_5a-0001 ID=EsuBft2436_5a-0001|Name=EsuBft2436_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=888bp|location=Sequence derived from alignment at Scaffold_544:192492..193635- (Ectocarpus subulatus male Bft15b)
ATGTCTGGAACGGAGGAGGACGCAACTCTGAGCGCGAGGTTGGATGAGGC
GCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCAAAGCTG
AGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCACCTGCC
GGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCTTGGAGGGGCTTCATC
TGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATGGCGGTA
CTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAATTCCTGTG
CCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAACTGGCGGAG
ACGCTTTCTGGCCTACGTGGGCAACCACAATCTCCAGCACACAATCTTTG
GCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGACA
CGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAGTTT
TATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACAACCTGTACTCTT
GCCATTCCGTGGCAGAGGCGTGGAGGATGATGGAGGATTGGTATTTGCCG
AACCACCCAGCTGATTGTCAGCTCCTCGTCGCCGAGCTAGACAATATAAC
CATGAGTGATGATGAGGACCTCAAGCTTTTCTTCTCGCGCGTCGCACAAC
TGGAGACCAAGTTACGGGCTGTGGGCATTGCTAAGAGTGACCAGGAAGTT
GTGCAGATCCTTGTGCGCCAACTCCCCGCACGCTGCGATGTCGAGAAGCG
CATAGTCTTTCCAAGCGTGATTTATCCCGCGCTGAGTTGCAGGACATCGT
GCGTGGTCGATATGCCACGCTCAAGGCCAGCGAGATGA