Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4538.ORGLA02G0045100.1 |
| ProteomeId | EsuBft4327_2 |
| Protein domains | IPR001584 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 971 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.65e-42 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4327_2a-0001 ID=EsuBft4327_2a-0001|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=971bp|location=Sequence derived from alignment at Scaffold_544:39342..40312- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCACAGACCCACACGGCGAACGCC
GTCTGCTTTACGCTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACA
TCTCAATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTACCGGGG
TGGACTAAAGCCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAA
ACACAAGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGC
CTGGACAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCG
AAAAATAAAGGAGGCTTCTTCCCGTACGAGTGCAAGATCACCGACGACTA
CACGAAGATGAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGACCG
AGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCTG
ATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAAGACCGGATCCGAATT
TCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAATACGCCGCCACCA
ACACCCCGCAACAAAGTGCTGTATTGGAACGGGACGGCCAATCCCTGGCC
GGAGTCACCCGGTGTCTTCTGAAGGATGGAGTTTTTCCGCCGTCCATGTG
GGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCCCACACT
CAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAAAAAGTCACCT
GATCTCTCGGGACTTCGGGTCATTGGAGCGCGCACCTTCGTACACCACGA
CAGATACCGGAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTG
GTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGG
GCNATCAGGGCTTTCGAATGA back to topprotein sequence of EsuBft4327_2a-0001 >EsuBft4327_2 ID=EsuBft4327_2|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=271bp
MLGAWTSFGRTRVPGWTKADSLSPCGVCQIAKHKQSPHPKQSTRELSRPG
QLVVIDNMGPVNPPAKNKGGFFPYECKITDDYTKMKEVYLLRKKSDTTEA
VHTYNMCVAAAGGYLIETIRCDKGGEKTGSEFRDYCKNSAIKLEYAATNT
PQQSAVLERDGQSLAGVTRCLLKDGVFPPSMWGELMLTAAYLLNRSPHSA
LGGATPYSKLHKKSPDLSGLRVIGARTFVHHDRYRKKLDDRAFEGKLCGF
GLDSQTYRVLNPSNGAIRAFE back to topmRNA from alignment at Scaffold_544:39342..40312- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4327_2a-0001 ID=EsuBft4327_2a-0001|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=971bp|location=Sequence derived from alignment at Scaffold_544:39342..40312- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCACAGACCCACACGGCGAACGCC
GTCTGCTTTACGCTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACA
TCTCAATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTACCGGGG
TGGACTAAAGCCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAA
ACACAAGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGC
CTGGACAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCG
AAAAATAAAGGAGGCTTCTTCCCGTACGAGTGCAAGATCACCGACGACTA
CACGAAGATGAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGACCG
AGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCTG
ATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAAGACCGGATCCGAATT
TCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAATACGCCGCCACCA
ACACCCCGCAACAAAGTGCTGTATTGGAACGGGACGGCCAATCCCTGGCC
GGAGTCACCCGGTGTCTTCTGAAGGATGGAGTTTTTCCGCCGTCCATGTG
GGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCCCACACT
CAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAAAAAGTCACCT
GATCTCTCGGGACTTCGGGTCATTGGAGCGCGCACCTTCGTACACCACGA
CAGATACCGGAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTG
GTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGG
GCNATCAGGGCTTTCGAATGA back to topCoding sequence (CDS) from alignment at Scaffold_544:39342..40312- >EsuBft4327_2a-0001 ID=EsuBft4327_2a-0001|Name=EsuBft4327_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=816bp|location=Sequence derived from alignment at Scaffold_544:39342..40312- (Ectocarpus subulatus male Bft15b)
ATGCTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTACCGGGGTGGAC
TAAAGCCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACA
AGCAGTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGA
CAGCTTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGAAAAA
TAAAGGAGGCTTCTTCCCGTACGAGTGCAAGATCACCGACGACTACACGA
AGATGAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGACCGAGGCG
GTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCTGATCGA
GACCATCCGCTGCGACAAGGGAGGCGAGAAGACCGGATCCGAATTTCGGG
ACTACTGCAAGAATTCAGCTATCAAGCTCGAATACGCCGCCACCAACACC
CCGCAACAAAGTGCTGTATTGGAACGGGACGGCCAATCCCTGGCCGGAGT
CACCCGGTGTCTTCTGAAGGATGGAGTTTTTCCGCCGTCCATGTGGGGGG
AGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCCCACACTCAGCA
CTGGGAGGAGCTACGCCATACTCGAAGTTGCACAAAAAGTCACCTGATCT
CTCGGGACTTCGGGTCATTGGAGCGCGCACCTTCGTACACCACGACAGAT
ACCGGAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGCTATGTGGTTTC
GGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCCAACGGGGCNAT
CAGGGCTTTCGAATGA back to top
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