EsuBft2191_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2191_4a-0001
Unique NameEsuBft2191_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:8008..8455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2191_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length44
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_4aEsuBft2191_4aEctocarpus subulatus male Bft15bgeneScaffold_544 8008..8455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_4a-0001-exonEsuBft2191_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 8008..8455 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_4a-0001-exonagat-five_prime_utr-5603Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 8008..8076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_4a-0001-cdsEsuBft2191_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 8077..8349 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_4a-0001-exonagat-three_prime_utr-8669Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 8350..8455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_4a-0001EsuBft2191_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 8077..8349 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2191_4a-0001 ID=EsuBft2191_4a-0001|Name=EsuBft2191_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=448bp|location=Sequence derived from alignment at Scaffold_544:8008..8455+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTGTTGCTAAGCATTGCGAGCATGGGCCGGGCAAGAGTAGACCCACAA
CAGGCGCAGAAGGCTTGCGATGAGGTCGGCAGTGGTCAGTTGTCTTTCAG
GGCTGCTGCCAAGGCCTAGTCTAGTCTACGGGGTGAACAAGGACGCGCTC
TCGCGACGTTTGAGCGGTGCTGTGGCCATGGATGCGAGGGTTGGCCCCGA
GACTGCTGTGCTGAGCAAGGCGGAAGAAGATGCGGTGGAAGATGCGTTGA
TCTACGCTTGTCGACACTTTCTGAGTTTCGGTCGGCAGCAGCTCATAGAT
GCGGTGCGAGTGCTCTGCCTCGACGGACGCCCGGTGCCCTAGGACCCAGA
TAAAGGCCCGGGGCGCAGCTGGCTTGACGGCTTCATGGCGAGGCACCCGG
CGTTGTCGGAACGAACAACTCACATCTACGAGGCAAACCGGATCAACG
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protein sequence of EsuBft2191_4a-0001

>EsuBft2191_4 ID=EsuBft2191_4|Name=EsuBft2191_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MRSAVVSCLSGLLPRPSLVYGVNKDALSRRLSGAVAMDARVGPETAVLSK
AEEDAVEDALIYACRHFLSFGRQQLIDAVRVLCLDGRPVP
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mRNA from alignment at Scaffold_544:8008..8455+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2191_4a-0001 ID=EsuBft2191_4a-0001|Name=EsuBft2191_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=448bp|location=Sequence derived from alignment at Scaffold_544:8008..8455+ (Ectocarpus subulatus male Bft15b)
GTCTGTTGCTAAGCATTGCGAGCATGGGCCGGGCAAGAGTAGACCCACAA
CAGGCGCAGAAGGCTTGCGATGAGGTCGGCAGTGGTCAGTTGTCTTTCAG
GGCTGCTGCCAAGGCCTAGTCTAGTCTACGGGGTGAACAAGGACGCGCTC
TCGCGACGTTTGAGCGGTGCTGTGGCCATGGATGCGAGGGTTGGCCCCGA
GACTGCTGTGCTGAGCAAGGCGGAAGAAGATGCGGTGGAAGATGCGTTGA
TCTACGCTTGTCGACACTTTCTGAGTTTCGGTCGGCAGCAGCTCATAGAT
GCGGTGCGAGTGCTCTGCCTCGACGGACGCCCGGTGCCCTAGGACCCAGA
TAAAGGCCCGGGGCGCAGCTGGCTTGACGGCTTCATGGCGAGGCACCCGG
CGTTGTCGGAACGAACAACTCACATCTACGAGGCAAACCGGATCAACG
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Coding sequence (CDS) from alignment at Scaffold_544:8008..8455+

>EsuBft2191_4a-0001 ID=EsuBft2191_4a-0001|Name=EsuBft2191_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=273bp|location=Sequence derived from alignment at Scaffold_544:8008..8455+ (Ectocarpus subulatus male Bft15b)
ATGAGGTCGGCAGTGGTCAGTTGTCTTTCAGGGCTGCTGCCAAGGCCTAG
TCTAGTCTACGGGGTGAACAAGGACGCGCTCTCGCGACGTTTGAGCGGTG
CTGTGGCCATGGATGCGAGGGTTGGCCCCGAGACTGCTGTGCTGAGCAAG
GCGGAAGAAGATGCGGTGGAAGATGCGTTGATCTACGCTTGTCGACACTT
TCTGAGTTTCGGTCGGCAGCAGCTCATAGATGCGGTGCGAGTGCTCTGCC
TCGACGGACGCCCGGTGCCCTAG
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