EsuBft2191_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2191_6a-0001
Unique NameEsuBft2191_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:109..3041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2191_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length200
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_6aEsuBft2191_6aEctocarpus subulatus male Bft15bgeneScaffold_544 109..3041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_6a-0001EsuBft2191_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 2337..2894 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_6a-0001-exonagat-exon-21639Ectocarpus subulatus male Bft15bexonScaffold_544 109..1256 -
EsuBft2191_6a-0001-exonagat-exon-21640Ectocarpus subulatus male Bft15bexonScaffold_544 1819..2384 -
EsuBft2191_6a-0001-exonEsuBft2191_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 2748..3041 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_6a-0001-exonagat-three_prime_utr-8671Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 109..1256 -
EsuBft2191_6a-0001-exonagat-three_prime_utr-8672Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 1819..2336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_6a-0001-cdsEsuBft2191_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 2337..2384 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2191_6a-0001-exonagat-five_prime_utr-5604Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 2895..3041 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2191_6a-0001 ID=EsuBft2191_6a-0001|Name=EsuBft2191_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2008bp|location=Sequence derived from alignment at Scaffold_544:109..3041- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGACCAAGAATCTGGGCGAAGGAGTCGATCCCCCGTTCTCGGAGAAG
CGTTGACTACTTTGGTACGTGCGATGTGACGTTGCGTGTGGTTCCACAGC
ACAACAGAGAGCGCTAGCTGTTAGCAGACAGCTCTCAGTGCACAGTGATG
CGCATCGTTATCCATGAGGCACACGGGGGCATAGGCCAAACGGGCAAAGG
CCATGTGAAGTTGACGGGCGGGTGTGAATATGACATGTCGATGTTCTTGG
GGCTTGCTCGAGCAGGGCGATGCCTGGCTGATGATGCTACTGCGGTCCGT
CGGCTTGAGGAAAAGGTGGCCAAGAGACGAAATACATACTAATACGTCGC
AAGAAGAGCGGCGGTAATGTTTTTTTTTCCGGTACAGCAGTCTCGGAGAC
TGCTGTGGTGTGGTTGTGCTATCACAAATCACAATTATAAGACGAGGCAC
AAGTTTGAGTGCAGGTCCTCGATCACACGACGAGGCAAAAATATCTGAGT
GCAGGTCCGTCGACCCGAGGAAAGGTGGTGTGTATCCACACCAACACCCA
ACACCCACTTTGATTATGTTGCAGCAGCTTGTTATTCGTGTTCACTTGAT
GGACGGGTGTTTTTCCCACGAGGTTTTCCAGATGTCAATGTGGACCGGAT
AGAAAGGGGGTGCGATGACTGATGTAAACCATGGTGGCTTGTCATCTGGC
GATGAGTCGTGGTTATCAGGAGCCGAACGAAAGATGTGTAGCACGTATGC
CGCTGGTGCGATTGCGGGACGGACTGCGGCCGTCAGGACACATACTCTTG
TGCGGGCCGGTTTTGTACACGCGAATGTCGGTCGACGTGTATGGAAAAAT
CGGTGGCACGGTGGTTACGGTACCACACTGTTCGACCCTGGGGTTACCCC
TATTTTGAGGCCAAAAATGTGTCCCAAACCGGGTGAACTTTTCGTGGCAA
ATAGACTGCGCTTTTCCTTCTTGGACCAATAAAAACGTTTGGAATTTGAA
TCAATATAAAAAGACACACGAACACACACGAACAGACTGGACAAATATGG
TCAAGAGCGTTCACGCAGCAATGCGCGAGGTGGACACCCGTCACTGCGCT
CACTGAGGCTGCTGGCACACACAAAAAGCCAGTGCCCCACAGCCCGACCG
GTCATAGATGGCGGACCCCACCGGTTCGACGGCGGACCCGCCCGCTTCGA
CGGCGGACCCGCCCGTTCTGTTGCCGAAAATAAGAAAAAGGGCAACGGGC
AAACAGCAGGGCAGTTGTGAGAGCGGGAATACCAAAAATTGCGCGCTGCT
GCTGCTCCTGCTGTATTTTCTCGCTCTCAACACCAAGTCTGTCGATGATA
GCAGCTGCATGCAGCTTCGCCTGCCTCTCTTGGTATCGTCCTGCTTATGT
TGGTTCTATCAACCTGTAGGACTCGGAGGCATACGAAGTAGTCGCACTAG
AAGGGAACAGCAAGGCCAAAAACACACGAGGGCAAAGACACGATGACTGT
TGGATCTTGGGAGTGTACAATTACCAAATTGGGAGATGCAGCATACCACG
ATATCCTGGCTTCGGCTGGGCTTGAAATAACCATTTTGCTGTCCTCCACT
CTTTGCAGGAGTGGCTTCCTAGGTTCGGGCGAGGGCATGTGTGGAGCTAT
GGCAGTGTATGTGTTGCTATTTTGTTTGAGTCACTTAGCTGCTGACACAA
TGACTGTTGGATCCTGGGAGTGTACGATAATCAAATTGGGAGATGCAGCA
TACCACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTC
CTCCGCTCTTTGCATCAGTAGCTTCCTAGATTCGAGCGAGTGCATTTGTG
TAGCTGAGATGTGTGTCTACGTAAAAGAACATGTGGAGAGAGTCGTATTG
GCATTCGCATCAAGCGCATTGCGCATTTTTCGAGTTTTGGCCCCCTTCCA
GGGACCTTGATTTTAACCCGCTGGCACTGACGTCTTTTAATTGGTCAGCC
GGTTAGCG
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protein sequence of EsuBft2191_6a-0001

>EsuBft2191_6 ID=EsuBft2191_6|Name=EsuBft2191_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MRIVIHEAHGGIGQTGKGHVKLTGGCEYDMSMFLGLARAGRCLADDATAV
RRLEEKVAKRRNTY
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mRNA from alignment at Scaffold_544:109..3041-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2191_6a-0001 ID=EsuBft2191_6a-0001|Name=EsuBft2191_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2933bp|location=Sequence derived from alignment at Scaffold_544:109..3041- (Ectocarpus subulatus male Bft15b)
CGAAGACCAAGAATCTGGGCGAAGGAGTCGATCCCCCGTTCTCGGAGAAG
CGTTGACTACTTTGGTACGTGCGATGTGACGTTGCGTGTGGTTCCACAGC
ACAACAGAGAGCGCTAGCTGTTAGCAGACAGCTCTCAGTGCACAGTGATG
CGCATCGTTATCCATGAGGCACACGGGGGCATAGGCCAAACGGGCAAAGG
CCATGTGAAGTTGACGGGCGGGTGTGAATATGACATGTCGATGTTCTTGG
GGCTTGCTCGAGCAGGGCGATGCCTGGCTGATGATGCTACTGCGGTGCGT
GCGCTGGTGTGCATGGAGCGGCACAGTTTCAATCACAAGGGTTACAAACC
TAGTGTGCAACACGCGACAGAGGATATCATACGAGAATGCGACACAACCG
AACCCCTGTGCGTGCGAAGAAGGGTCACCAAGACCGCTGAAGCGGGCCAA
TTTGGTTGTCTTTACAAACTTCAACGCGTGCGTAGGAAATACAGACTATA
CGTCGCAAGAGCGGATGTAATTTCTAATTTCCGGTACAGCAGTCTCGAAG
ACTGCTGTGGTGTGGTTGTGATAACACAAATCACAATTACCAGACGAGGC
ACAAAGTTTGAGTGCAGGTCCTCAATAACACGACAAGGCACAAATATTCG
AGTGCAGGTCCGTCGGCTTGAGGAAAAGGTGGCCAAGAGACGAAATACAT
ACTAATACGTCGCAAGAAGAGCGGCGGTAATGTTTTTTTTTCCGGTACAG
CAGTCTCGGAGACTGCTGTGGTGTGGTTGTGCTATCACAAATCACAATTA
TAAGACGAGGCACAAGTTTGAGTGCAGGTCCTCGATCACACGACGAGGCA
AAAATATCTGAGTGCAGGTCCGTCGACCCGAGGAAAGGTGGTGTGTATCC
ACACCAACACCCAACACCCACTTTGATTATGTTGCAGCAGCTTGTTATTC
GTGTTCACTTGATGGACGGGTGTTTTTCCCACGAGGTTTTCCAGATGTCA
ATGTGGACCGGATAGAAAGGGGGTGCGATGACTGATGTAAACCATGGTGG
CTTGTCATCTGGCGATGAGTCGTGGTTATCAGGAGCCGAACGAAAGATGT
GTAGCACGTATGCCGCTGGTGCGATTGCGGGACGGACTGCGGCCGTCAGG
ACACATACTCTTGTGCGGGCCGGTTTTGTACACGCGAATGTCGGTCGACG
TGTATGGAAAAATCGGTGGCACGGTAAGCATTAACATACAACGAATCGAT
ATAGAGCGAGCTAGTACGCTGGTGCGTATGATGCCGGCTCACGGTTATTA
ATTGTGGACCAGGGTACGGGTCATCCGGAGATGAGCCATGGTGGTCAGGA
GCCGCGCACAAGTTGCGTGGCGTGTAGGTCGCAAGTGCGGCTGGGATACA
GTGTGCGGTCGTTATGATACATTGCATACTGAATGTTGCTCGAACCGGTT
TGCACGTACGACTAGGGGTCGTTGGCACGGAATTATCGGTAGAGAGGCAA
AAAGACACAACGCGATATGTACAGGTGGTTATGGTACCACACTGTATATA
CCGCTGGTTACGCTAGAGCCTTCTGATGCGGTTCATCTGGAGATGAGCCG
TGGTGGTCAGGAGCCGCACACAAGTTGCGTGGCGTGTAGGTCGCTGGTGC
GGCTGGGATACTGTATCCGGCCGTTATGATACGTACTCATACTGAATGTT
ACTCGAATCGGTTTGCACGTGCGACTGTGGGTCGTTGGCACGGAATAATC
AGTAGAGAACAAAAGACACAACGCGATATATACAGGTGGTTACGGTACCA
CACTGTTCGACCCTGGGGTTACCCCTATTTTGAGGCCAAAAATGTGTCCC
AAACCGGGTGAACTTTTCGTGGCAAATAGACTGCGCTTTTCCTTCTTGGA
CCAATAAAAACGTTTGGAATTTGAATCAATATAAAAAGACACACGAACAC
ACACGAACAGACTGGACAAATATGGTCAAGAGCGTTCACGCAGCAATGCG
CGAGGTGGACACCCGTCACTGCGCTCACTGAGGCTGCTGGCACACACAAA
AAGCCAGTGCCCCACAGCCCGACCGGTCATAGATGGCGGACCCCACCGGT
TCGACGGCGGACCCGCCCGCTTCGACGGCGGACCCGCCCGTTCTGTTGCC
GAAAATAAGAAAAAGGGCAACGGGCAAACAGCAGGGCAGTTGTGAGAGCG
GGAATACCAAAAATTGCGCGCTGCTGCTGCTCCTGCTGTATTTTCTCGCT
CTCAACACCAAGTCTGTCGATGATAGCAGCTGCATGCAGCTTCGCCTGCC
TCTCTTGGTATCGTCCTGCTTATGTTGGTTCTATCAACCTGTAGGACTCG
GAGGCATACGAAGTAGTCGCACTAGAAGGGAACAGCAAGGCCAAAAACAC
ACGAGGGCAAAGACACGATGACTGTTGGATCTTGGGAGTGTACAATTACC
AAATTGGGAGATGCAGCATACCACGATATCCTGGCTTCGGCTGGGCTTGA
AATAACCATTTTGCTGTCCTCCACTCTTTGCAGGAGTGGCTTCCTAGGTT
CGGGCGAGGGCATGTGTGGAGCTATGGCAGTGTATGTGTTGCTATTTTGT
TTGAGTCACTTAGCTGCTGACACAATGACTGTTGGATCCTGGGAGTGTAC
GATAATCAAATTGGGAGATGCAGCATACCACGATATCCTGGCTTCGGCTG
GGCTTGAAATAACCCTTTTGCTGTCCTCCGCTCTTTGCATCAGTAGCTTC
CTAGATTCGAGCGAGTGCATTTGTGTAGCTGAGATGTGTGTCTACGTAAA
AGAACATGTGGAGAGAGTCGTATTGGCATTCGCATCAAGCGCATTGCGCA
TTTTTCGAGTTTTGGCCCCCTTCCAGGGACCTTGATTTTAACCCGCTGGC
ACTGACGTCTTTTAATTGGTCAGCCGGTTAGCG
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Coding sequence (CDS) from alignment at Scaffold_544:109..3041-

>EsuBft2191_6a-0001 ID=EsuBft2191_6a-0001|Name=EsuBft2191_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_544:109..3041- (Ectocarpus subulatus male Bft15b)
ATGCGCATCGTTATCCATGAGGCACACGGGGGCATAGGCCAAACGGGCAA
AGGCCATGTGAAGTTGACGGGCGGGTGTGAATATGACATGTCGATGTTCT
TGGGGCTTGCTCGAGCAGGGCGATGCCTGGCTGATGATGCTACTGCGGTC
CGTCGGCTTGAGGAAAAGGTGGCCAAGAGACGAAATACATACTAA
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