|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIV2 |
| ProteomeId | EsuBft4205_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 137 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.84e-48 |
| EggNOG OGs | KOG4373@1|root,KOG4373@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | WRN |
| KEGG ko | ko:K10900,ko:K20777 |
| GOs | GO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113 |
| EC | 3.1.11.1,3.6.4.12 |
| Description | 3'-5' exonuclease activity |
| COG category | C |
| BRITE | ko00000,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4205_3a-0001 ID=EsuBft4205_3a-0001|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1378bp|location=Sequence derived from alignment at Scaffold_54:134785..136649- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTTTTCGTGGCATCCGACGAATTCTGGGTTTCTGGTAGATTGGAGTTCG
TGTTGTGGTTTTCCGACGATATTGCTTGTGGTGTATGTTTTTTCCCATGC
ACGTGCAGGTACAAGTGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAA
GGCAAGCAGAGGGCGGAAAAGTGCAAGACGAGCTTCAACGCGTGGGATGC
TGGGTGCCTCCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTCCCTTTCC
TTCTCACCAAGCGATCGGGCATTGAGATTTGCATGTTGGACCGGCTTGCA
GATGGTTTGGTGCATGGGAAGGGCTTCTCCGCTGGTACCAAGAACATTCG
TCAGGCGCATACGACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTC
TGGTCAACACCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTC
GCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATGACTCGACAAAGCACGG
CGGTGCGGTCCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATT
TTTCGAAACTCCCCGTGCTGGAGGTGGATAGCGTGGATTGGACCCTGGAG
GAGTATCAGCACCGCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGG
GGATGCTTCGTTTAAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGG
GCGAGGAGCGCACAAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAA
TGTGGTCTGGCAGCGTCCGATGAAGACCGGTGCCTTGAGCGAGCTGGCGG
AGGAGTTGAAGCTTTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTT
CCTACTCTGTGGAACACAGGTAATTTGCGAAATGATTGTAGACTTGCTTC
GCTTTTCGAGGTTGTAGACCGGTGTCAGGCCTGCTGTTTTCGCGGTGACT
TTGCAGTATTGTCTCCTCAATCCTTTCCGGCCCCGTTGCGTGACGCTTCA
CTTTTTCAGATGACTGCTGTGATGACCGTCAACCGCTGAAACGCATATTT
CGCGAGTTTGAGGAGGAAACGGGGATCAGTCTTTATCTGGAAGACGACGT
GGACGCCGGAGTTCAGTTGGAGCTCCTGCCACAGCTGGATATAGAGTTCA
CCCCTGCCATCGTGTACGACCCGGAGGCGGTAGCCGCTGCCCGCGGCTCC
CTCCGTCAAAGCATCAGCCAAAATCGGGTGGAGGGAAAGATGATGTGCGG
AGCGGACGCAGAGTGGCAGTTTTCACTCGTGGGCGGGAACCTGTAGCGAC
CTTCCAGATTGCGGCTTTGAGGGGGCCGTCGTTCCTCTTCCTCCTGCAGA
GAGGGAGCTCTGGTTTTACGAAGAAAAC back to topprotein sequence of EsuBft4205_3a-0001 >EsuBft4205_3 ID=EsuBft4205_3|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MFFPMHVQVQVYKCAKCAEFNKGKQRAEKCKTSFNAWDAGCLRRLPEYIS
KEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAHTTKFMVDQ
LKYTSLVNTRRTSSGIFRSANLAKTPERFGSFDDSTKHGGAVPSEHYLRD
VWRLYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIR
LGAKAGEERTRPVYGFFTVFNECGLAASDEDRCLERAGGGVEAFFHAIRS
QWLQGSYSVEHR back to topmRNA from alignment at Scaffold_54:134785..136649- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4205_3a-0001 ID=EsuBft4205_3a-0001|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1865bp|location=Sequence derived from alignment at Scaffold_54:134785..136649- (Ectocarpus subulatus male Bft15b)
TGTTTTCGTGGCATCCGACGAATTCTGGGTTTCTGGTAGATTGGAGTTCG
TGTTGTGGTTTTCCGACGATATTGCTTGTGGTGTATGTTTTTTCCCATGC
ACGTGCAGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCA
GAGGGCGGAAAAGTNGGGTTTCTGGTAGATTGGAGTTCGTGTTGTGGTTT
TCCGACGATATTGCTTGTGGTGTATGTTTTTTCCCATGCACGTGCAGGTA
CAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAGAGGGCGGAAA
AGTGCAAGACGAGCTTCAACGCGTGGGATGCTGGGTGCCTCCGGCGTCTC
CCGGAGTACATCTCCAAGGAGTTCCCTTTCCTTCTCACCAAGCGATCGGG
CATTGAGATTTGCATGTTGGACCGGCTTGCAGATGGTTTGGTGCATGGGA
AGGGCTTCTCCGCTGGTACCAAGAACATTCGTCAGGTGAATATGCAGTGT
CTCATCTGCAGCGTCTTAAGATAACGGGTTGGTCTGGTCTTGGCTTTCCT
AGCCTGTTCAAAACATTTGCGGATGGTACCGCAAACGTTGCTGCGGGAAA
CGTCGAATCTCATAAGCGCCGACCCGTGCTACAACGAAAACGTGTCGCCC
TCGCAATGCTGTTGCAGGCGCATACGACCAAGTTCATGGTGGACCAGCTG
AAGTACACCTCTCTGGTCAACACCCGGCGGACCAGCTCGGGCATCTTCCG
CTCGGCCAACCTCGCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATGACT
CGACAAAGCACGGCGGTGCGGTCCCGTCGGAGCACTATTTGCGGGACGTG
TGGCGGTTGTATTTTTCGAAACTCCCCGTGCTGGAGGTGGATAGCGTGGA
TTGGACCCTGGAGGAGTATCAGCACCGCTTGATGCAGCGCTGGGACGGAG
ACATTCTGGGTGGGGATGCTTCGTTTAAGTTTGCGAAGATCATCCGGCTC
GGGGCAAAAGCGGGCGAGGAGCGCACAAGACCAGTGTACGGCTTCTTCAC
AGTCTTCAACGAATGTGAGCAGGTGAGAAATTCTCCTGTCTCTGCTTCGT
TCAACCATTCCCAAACCCTTCGTGTTGGTGCCATGTTTTCTGGAGCAATC
ACTGGAAAATTATTCTCGTAGTATGGTGCGCTCATTCTGATGACCCGAAA
AAGATTTCGTGGTTACACATGTGTGTTCTTATTTGAAGGTGGTCTGGCAG
CGTCCGATGAAGACCGGTGCCTTGAGCGAGCTGGCGGAGGAGTTGAAGCT
TTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTGGA
ACACAGGTAATTTGCGAAATGATTGTAGACTTGCTTCGCTTTTCGAGGTT
GTAGACCGGTGTCAGGCCTGCTGTTTTCGCGGTGACTTTGCAGTATTGTC
TCCTCAATCCTTTCCGGCCCCGTTGCGTGACGCTTCACTTTTTCAGATGA
CTGCTGTGATGACCGTCAACCGCTGAAACGCATATTTCGCGAGTTTGAGG
AGGAAACGGGGATCAGTCTTTATCTGGAAGACGACGTGGACGCCGGAGTT
CAGTTGGAGCTCCTGCCACAGCTGGATATAGAGTTCACCCCTGCCATCGT
GTACGACCCGGAGGCGGTAGCCGCTGCCCGCGGCTCCCTCCGTCAAAGCA
TCAGCCAAAATCGGGTGGAGGGAAAGATGATGTGCGGAGCGGACGCAGAG
TGGCAGTTTTCACTCGTGGGCGGGAACCTGTAGCGACCTTCCAGATTGCG
GCTTTGAGGGGGCCGTCGTTCCTCTTCCTCCTGCAGAGAGGGAGCTCTGG
TTTTACGAAGAAAAC back to topCoding sequence (CDS) from alignment at Scaffold_54:134785..136649- >EsuBft4205_3a-0001 ID=EsuBft4205_3a-0001|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_54:134785..136649- (Ectocarpus subulatus male Bft15b)
ATGTTTTTTCCCATGCACGTGCAGGTACAAGTGTACAAGTGTGCGAAGTG
CGCGGAGTTCAATAAAGGCAAGCAGAGGGCGGAAAAGTGCAAGACGAGCT
TCAACGCGTGGGATGCTGGGTGCCTCCGGCGTCTCCCGGAGTACATCTCC
AAGGAGTTCCCTTTCCTTCTCACCAAGCGATCGGGCATTGAGATTTGCAT
GTTGGACCGGCTTGCAGATGGTTTGGTGCATGGGAAGGGCTTCTCCGCTG
GTACCAAGAACATTCGTCAGGCGCATACGACCAAGTTCATGGTGGACCAG
CTGAAGTACACCTCTCTGGTCAACACCCGGCGGACCAGCTCGGGCATCTT
CCGCTCGGCCAACCTCGCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATG
ACTCGACAAAGCACGGCGGTGCGGTCCCGTCGGAGCACTATTTGCGGGAC
GTGTGGCGGTTGTATTTTTCGAAACTCCCCGTGCTGGAGGTGGATAGCGT
GGATTGGACCCTGGAGGAGTATCAGCACCGCTTGATGCAGCGCTGGGACG
GAGACATTCTGGGTGGGGATGCTTCGTTTAAGTTTGCGAAGATCATCCGG
CTCGGGGCAAAAGCGGGCGAGGAGCGCACAAGACCAGTGTACGGCTTCTT
CACAGTCTTCAACGAATGTGGTCTGGCAGCGTCCGATGAAGACCGGTGCC
TTGAGCGAGCTGGCGGAGGAGTTGAAGCTTTTTTTCATGCGATTCGTTCG
CAATGGCTTCAAGGTTCCTACTCTGTGGAACACAGGTAA back to top
|