EsuBft4205_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4205_3a-0001
Unique NameEsuBft4205_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:134785..136649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIV2
ProteomeIdEsuBft4205_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length137
Hectar predicted targeting categoryother localisation
Evalue8.84e-48
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_3aEsuBft4205_3aEctocarpus subulatus male Bft15bgeneScaffold_54 134785..136649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_3a-0001EsuBft4205_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 135290..136565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_3a-0001-exonagat-exon-7839Ectocarpus subulatus male Bft15bexonScaffold_54 134785..135411 -
EsuBft4205_3a-0001-exonagat-exon-7841Ectocarpus subulatus male Bft15bexonScaffold_54 135586..135982 -
EsuBft4205_3a-0001-exonEsuBft4205_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 136165..136402 -
EsuBft4205_3a-0001-exonagat-exon-7840Ectocarpus subulatus male Bft15bexonScaffold_54 136534..136649 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_3a-0001-exonagat-three_prime_utr-15455Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 134785..135289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_3a-0001-cdsEsuBft4205_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 135290..135411 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4205_3a-0001-exonagat-five_prime_utr-9836Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 136566..136649 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4205_3a-0001 ID=EsuBft4205_3a-0001|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1378bp|location=Sequence derived from alignment at Scaffold_54:134785..136649- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTTTTCGTGGCATCCGACGAATTCTGGGTTTCTGGTAGATTGGAGTTCG
TGTTGTGGTTTTCCGACGATATTGCTTGTGGTGTATGTTTTTTCCCATGC
ACGTGCAGGTACAAGTGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAA
GGCAAGCAGAGGGCGGAAAAGTGCAAGACGAGCTTCAACGCGTGGGATGC
TGGGTGCCTCCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTCCCTTTCC
TTCTCACCAAGCGATCGGGCATTGAGATTTGCATGTTGGACCGGCTTGCA
GATGGTTTGGTGCATGGGAAGGGCTTCTCCGCTGGTACCAAGAACATTCG
TCAGGCGCATACGACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTC
TGGTCAACACCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTC
GCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATGACTCGACAAAGCACGG
CGGTGCGGTCCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATT
TTTCGAAACTCCCCGTGCTGGAGGTGGATAGCGTGGATTGGACCCTGGAG
GAGTATCAGCACCGCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGG
GGATGCTTCGTTTAAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGG
GCGAGGAGCGCACAAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAA
TGTGGTCTGGCAGCGTCCGATGAAGACCGGTGCCTTGAGCGAGCTGGCGG
AGGAGTTGAAGCTTTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTT
CCTACTCTGTGGAACACAGGTAATTTGCGAAATGATTGTAGACTTGCTTC
GCTTTTCGAGGTTGTAGACCGGTGTCAGGCCTGCTGTTTTCGCGGTGACT
TTGCAGTATTGTCTCCTCAATCCTTTCCGGCCCCGTTGCGTGACGCTTCA
CTTTTTCAGATGACTGCTGTGATGACCGTCAACCGCTGAAACGCATATTT
CGCGAGTTTGAGGAGGAAACGGGGATCAGTCTTTATCTGGAAGACGACGT
GGACGCCGGAGTTCAGTTGGAGCTCCTGCCACAGCTGGATATAGAGTTCA
CCCCTGCCATCGTGTACGACCCGGAGGCGGTAGCCGCTGCCCGCGGCTCC
CTCCGTCAAAGCATCAGCCAAAATCGGGTGGAGGGAAAGATGATGTGCGG
AGCGGACGCAGAGTGGCAGTTTTCACTCGTGGGCGGGAACCTGTAGCGAC
CTTCCAGATTGCGGCTTTGAGGGGGCCGTCGTTCCTCTTCCTCCTGCAGA
GAGGGAGCTCTGGTTTTACGAAGAAAAC
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protein sequence of EsuBft4205_3a-0001

>EsuBft4205_3 ID=EsuBft4205_3|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MFFPMHVQVQVYKCAKCAEFNKGKQRAEKCKTSFNAWDAGCLRRLPEYIS
KEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAHTTKFMVDQ
LKYTSLVNTRRTSSGIFRSANLAKTPERFGSFDDSTKHGGAVPSEHYLRD
VWRLYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIR
LGAKAGEERTRPVYGFFTVFNECGLAASDEDRCLERAGGGVEAFFHAIRS
QWLQGSYSVEHR
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mRNA from alignment at Scaffold_54:134785..136649-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4205_3a-0001 ID=EsuBft4205_3a-0001|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1865bp|location=Sequence derived from alignment at Scaffold_54:134785..136649- (Ectocarpus subulatus male Bft15b)
TGTTTTCGTGGCATCCGACGAATTCTGGGTTTCTGGTAGATTGGAGTTCG
TGTTGTGGTTTTCCGACGATATTGCTTGTGGTGTATGTTTTTTCCCATGC
ACGTGCAGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCA
GAGGGCGGAAAAGTNGGGTTTCTGGTAGATTGGAGTTCGTGTTGTGGTTT
TCCGACGATATTGCTTGTGGTGTATGTTTTTTCCCATGCACGTGCAGGTA
CAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAGAGGGCGGAAA
AGTGCAAGACGAGCTTCAACGCGTGGGATGCTGGGTGCCTCCGGCGTCTC
CCGGAGTACATCTCCAAGGAGTTCCCTTTCCTTCTCACCAAGCGATCGGG
CATTGAGATTTGCATGTTGGACCGGCTTGCAGATGGTTTGGTGCATGGGA
AGGGCTTCTCCGCTGGTACCAAGAACATTCGTCAGGTGAATATGCAGTGT
CTCATCTGCAGCGTCTTAAGATAACGGGTTGGTCTGGTCTTGGCTTTCCT
AGCCTGTTCAAAACATTTGCGGATGGTACCGCAAACGTTGCTGCGGGAAA
CGTCGAATCTCATAAGCGCCGACCCGTGCTACAACGAAAACGTGTCGCCC
TCGCAATGCTGTTGCAGGCGCATACGACCAAGTTCATGGTGGACCAGCTG
AAGTACACCTCTCTGGTCAACACCCGGCGGACCAGCTCGGGCATCTTCCG
CTCGGCCAACCTCGCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATGACT
CGACAAAGCACGGCGGTGCGGTCCCGTCGGAGCACTATTTGCGGGACGTG
TGGCGGTTGTATTTTTCGAAACTCCCCGTGCTGGAGGTGGATAGCGTGGA
TTGGACCCTGGAGGAGTATCAGCACCGCTTGATGCAGCGCTGGGACGGAG
ACATTCTGGGTGGGGATGCTTCGTTTAAGTTTGCGAAGATCATCCGGCTC
GGGGCAAAAGCGGGCGAGGAGCGCACAAGACCAGTGTACGGCTTCTTCAC
AGTCTTCAACGAATGTGAGCAGGTGAGAAATTCTCCTGTCTCTGCTTCGT
TCAACCATTCCCAAACCCTTCGTGTTGGTGCCATGTTTTCTGGAGCAATC
ACTGGAAAATTATTCTCGTAGTATGGTGCGCTCATTCTGATGACCCGAAA
AAGATTTCGTGGTTACACATGTGTGTTCTTATTTGAAGGTGGTCTGGCAG
CGTCCGATGAAGACCGGTGCCTTGAGCGAGCTGGCGGAGGAGTTGAAGCT
TTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTGGA
ACACAGGTAATTTGCGAAATGATTGTAGACTTGCTTCGCTTTTCGAGGTT
GTAGACCGGTGTCAGGCCTGCTGTTTTCGCGGTGACTTTGCAGTATTGTC
TCCTCAATCCTTTCCGGCCCCGTTGCGTGACGCTTCACTTTTTCAGATGA
CTGCTGTGATGACCGTCAACCGCTGAAACGCATATTTCGCGAGTTTGAGG
AGGAAACGGGGATCAGTCTTTATCTGGAAGACGACGTGGACGCCGGAGTT
CAGTTGGAGCTCCTGCCACAGCTGGATATAGAGTTCACCCCTGCCATCGT
GTACGACCCGGAGGCGGTAGCCGCTGCCCGCGGCTCCCTCCGTCAAAGCA
TCAGCCAAAATCGGGTGGAGGGAAAGATGATGTGCGGAGCGGACGCAGAG
TGGCAGTTTTCACTCGTGGGCGGGAACCTGTAGCGACCTTCCAGATTGCG
GCTTTGAGGGGGCCGTCGTTCCTCTTCCTCCTGCAGAGAGGGAGCTCTGG
TTTTACGAAGAAAAC
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Coding sequence (CDS) from alignment at Scaffold_54:134785..136649-

>EsuBft4205_3a-0001 ID=EsuBft4205_3a-0001|Name=EsuBft4205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_54:134785..136649- (Ectocarpus subulatus male Bft15b)
ATGTTTTTTCCCATGCACGTGCAGGTACAAGTGTACAAGTGTGCGAAGTG
CGCGGAGTTCAATAAAGGCAAGCAGAGGGCGGAAAAGTGCAAGACGAGCT
TCAACGCGTGGGATGCTGGGTGCCTCCGGCGTCTCCCGGAGTACATCTCC
AAGGAGTTCCCTTTCCTTCTCACCAAGCGATCGGGCATTGAGATTTGCAT
GTTGGACCGGCTTGCAGATGGTTTGGTGCATGGGAAGGGCTTCTCCGCTG
GTACCAAGAACATTCGTCAGGCGCATACGACCAAGTTCATGGTGGACCAG
CTGAAGTACACCTCTCTGGTCAACACCCGGCGGACCAGCTCGGGCATCTT
CCGCTCGGCCAACCTCGCCAAAACTCCGGAGAGGTTCGGCAGCTTTGATG
ACTCGACAAAGCACGGCGGTGCGGTCCCGTCGGAGCACTATTTGCGGGAC
GTGTGGCGGTTGTATTTTTCGAAACTCCCCGTGCTGGAGGTGGATAGCGT
GGATTGGACCCTGGAGGAGTATCAGCACCGCTTGATGCAGCGCTGGGACG
GAGACATTCTGGGTGGGGATGCTTCGTTTAAGTTTGCGAAGATCATCCGG
CTCGGGGCAAAAGCGGGCGAGGAGCGCACAAGACCAGTGTACGGCTTCTT
CACAGTCTTCAACGAATGTGGTCTGGCAGCGTCCGATGAAGACCGGTGCC
TTGAGCGAGCTGGCGGAGGAGTTGAAGCTTTTTTTCATGCGATTCGTTCG
CAATGGCTTCAAGGTTCCTACTCTGTGGAACACAGGTAA
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