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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FVB3 |
| ProteomeId | EsuBft4205_2 |
| Protein domains | IPR002562 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | werner syndrome atp-dependent helicase homolog os:mus musculus gn:wrn pe:1 sv:3 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1109 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.28e-79 |
| EggNOG OGs | KOG4373@1|root,KOG4373@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | WRN |
| KEGG ko | ko:K10900,ko:K20777 |
| GOs | GO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113 |
| EC | 3.1.11.1,3.6.4.12 |
| Description | 3'-5' exonuclease activity |
| COG category | C |
| BRITE | ko00000,ko01000,ko03032,ko03400 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006139 |
| GO | 0003676 |
| GO | 0008408 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4205_2a-0001 ID=EsuBft4205_2a-0001|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1109bp|location=Sequence derived from alignment at Scaffold_54:133361..134783- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTCCCGCTCCCCTGAAGGCTGTTCTCGAGGACCCCAGCATCATCAAGGC
TGGTGTTGCCATCAACACGGATGCCACGCATATGCTCAACGACTATGGCG
TGCAAATGGCGAGCACGGTGGACCTGCGTGTCCTTTCCGTTTCCAAGTTG
GTGGTGACATCGTCTCGAACACTCGCCGGCTTGACGGCGTGCCTCCTGGG
GAGGCAGCTGCCGAAGGATACCGTCCGATGCTCCCGTCGGGGAAGCGCTC
AACTCTCCGATGAACAGCGAGACTACGCCATCAGGGACGCCGTGGCCTCG
GCACTCTTGTACGAGGCCATCCACAAGAACAAGGACCCGATCACGTCCGT
GCCTTCTTCACCGTTCGACCCGGCTATCGGCTTGAAGGTGCGCCTCTACA
ACGCCAGCCATTCCGCCTGCGTGGCGGTCGGTCACGTGGTGTCCGATGCC
ACCGCGGAGGCCGCCCTTCGTCACTGGCAAAGTTCTGCCAAGCTACAAGG
TCTTTCCGGGAGCAGGCAACGGGCATGACGTGGTTGTAGGGGGCTCCGGG
GCAGGAGGTAACTCGGTAGAGGGGTCGCCGATCTTGGCTGGGCCTGGGGC
GGGGGCGGCGGGGGCGGCGCGGGCGGCGTTGCCGCAGTTCAGGGCCTGCA
CCGAATGCGGACACCACAAGGGTGCATACCCTGCTGAACACCCTGGGAAT
CGCCGTGGACATAAGGCGAAAGGTTCAGCGCCCCAGCCCAACGTTGAACC
GACAAAAAATGTTTAAAGGACCAGAGCTTGCGGCGTCCAGAGTCGGACAA
AGTCTGGAACCCTAAGCAAAGAAAGAGGACGTTTCTGCCCTGCCCGTGCG
ATGTATGCAAGGGCTCATACGCACACGTGGAGGATGGTGATAGTTAGCCT
GTACTGCCGGGTCGAGAAGGGCTGGACACATGTAAAAAAAAGTAAATATT
TGCCTACCGGTTCGAGAGGCCGTTCGGCTAGTTAAGAGTGCACTAGTTGG
ACGGTAGTCGCCCAGAATTCGGATGGTAAAGGAAACTAACAAACGGCCCA
CGATTGAGACATCAGATACATCACGGCTGCCCAGGCGATGTGTGCGTGTG
TGTGTGTTT back to topprotein sequence of EsuBft4205_2a-0001 >EsuBft4205_2 ID=EsuBft4205_2|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MLNDYGVQMASTVDLRVLSVSKLVVTSSRTLAGLTACLLGRQLPKDTVRC
SRRGSAQLSDEQRDYAIRDAVASALLYEAIHKNKDPITSVPSSPFDPAIG
LKVRLYNASHSACVAVGHVVSDATAEAALRHWQSSAKLQGLSGSRQRA back to topmRNA from alignment at Scaffold_54:133361..134783- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4205_2a-0001 ID=EsuBft4205_2a-0001|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1423bp|location=Sequence derived from alignment at Scaffold_54:133361..134783- (Ectocarpus subulatus male Bft15b)
TTTCCCGCTCCCCTGAAGGCTGTTCTCGAGGACCCCAGCATCATCAAGGT
GAGACAACAGCAACAGCACATGCGCGTGAGGGTTGAATGCGATAGATGTT
GTGTTCCATGCAAGTACTGCTCTTGAAAGGTTGGTACGGCGTCTTTTAGC
ATCCGTCTTGTGAGCGTCTTCCTCGTGATACTATTTGAACGCCGACTCGG
CGACTCGATGTTCCCTCTGTGCAGGCTGGTGTTGCCATCAACACGGATGC
CACGCATATGCTCAACGACTATGGCGTGCAAATGGCGAGCACGGTGGACC
TGCGTGTCCTTTCCGTTTCCAAGTTGGTGGTGACATCGTCTCGAACACTC
GCCGGCTTGACGGCGTGCCTCCTGGGGAGGCAGCTGCCGAAGGATACCGT
CCGATGCTCCCGTCGGGGAAGCGCTCAACTCTCCGATGAACAGCGAGACT
ACGCCATCAGGGACGCCGTGGCCTCGGCACTCTTGTACGAGGCCATCCAC
AAGAACAAGGACCCGATCACGTCCGTGCCTTCTTCACCGTTCGACCCGGC
TATCGGCTTGAAGGTGAGCGCCTACGCATTGTGGTACCGGCCGTACTTCG
ATGTGGACCGACAACAACAGATCATGGCAGGTTCCAAATTTGTGCTGAAA
CCCAAGCAACAATGCTTGCCCTCGTTCTTTTGCCCTCTGCGCGTACTACA
GGTGCGCCTCTACAACGCCAGCCATTCCGCCTGCGTGGCGGTCGGTCACG
TGGTGTCCGATGCCACCGCGGAGGCCGCCCTTCGTCACTGGCAAAGTTCT
GCCAAGCTACAAGGTCTTTCCGGGAGCAGGCAACGGGCATGACGTGGTTG
TAGGGGGCTCCGGGGCAGGAGGTAACTCGGTAGAGGGGTCGCCGATCTTG
GCTGGGCCTGGGGCGGGGGCGGCGGGGGCGGCGCGGGCGGCGTTGCCGCA
GTTCAGGGCCTGCACCGAATGCGGACACCACAAGGGTGCATACCCTGCTG
AACACCCTGGGAATCGCCGTGGACATAAGGCGAAAGGTTCAGCGCCCCAG
CCCAACGTTGAACCGACAAAAAATGTTTAAAGGACCAGAGCTTGCGGCGT
CCAGAGTCGGACAAAGTCTGGAACCCTAAGCAAAGAAAGAGGACGTTTCT
GCCCTGCCCGTGCGATGTATGCAAGGGCTCATACGCACACGTGGAGGATG
GTGATAGTTAGCCTGTACTGCCGGGTCGAGAAGGGCTGGACACATGTAAA
AAAAAGTAAATATTTGCCTACCGGTTCGAGAGGCCGTTCGGCTAGTTAAG
AGTGCACTAGTTGGACGGTAGTCGCCCAGAATTCGGATGGTAAAGGAAAC
TAACAAACGGCCCACGATTGAGACATCAGATACATCACGGCTGCCCAGGC
GATGTGTGCGTGTGTGTGTGTTT back to topCoding sequence (CDS) from alignment at Scaffold_54:133361..134783- >EsuBft4205_2a-0001 ID=EsuBft4205_2a-0001|Name=EsuBft4205_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_54:133361..134783- (Ectocarpus subulatus male Bft15b)
ATGCTCAACGACTATGGCGTGCAAATGGCGAGCACGGTGGACCTGCGTGT
CCTTTCCGTTTCCAAGTTGGTGGTGACATCGTCTCGAACACTCGCCGGCT
TGACGGCGTGCCTCCTGGGGAGGCAGCTGCCGAAGGATACCGTCCGATGC
TCCCGTCGGGGAAGCGCTCAACTCTCCGATGAACAGCGAGACTACGCCAT
CAGGGACGCCGTGGCCTCGGCACTCTTGTACGAGGCCATCCACAAGAACA
AGGACCCGATCACGTCCGTGCCTTCTTCACCGTTCGACCCGGCTATCGGC
TTGAAGGTGCGCCTCTACAACGCCAGCCATTCCGCCTGCGTGGCGGTCGG
TCACGTGGTGTCCGATGCCACCGCGGAGGCCGCCCTTCGTCACTGGCAAA
GTTCTGCCAAGCTACAAGGTCTTTCCGGGAGCAGGCAACGGGCATGA back to top
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