|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIV2 |
| ProteomeId | EsuBft3747_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 163 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.69e-77 |
| EggNOG OGs | KOG4373@1|root,KOG4373@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | WRN |
| KEGG ko | ko:K10900,ko:K20777 |
| GOs | GO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113 |
| EC | 3.1.11.1,3.6.4.12 |
| Description | 3'-5' exonuclease activity |
| COG category | C |
| BRITE | ko00000,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3747_2a-0001 ID=EsuBft3747_2a-0001|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1635bp|location=Sequence derived from alignment at Scaffold_54:124381..127581- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACAGCAGCAGCAGTGGCGGCGGTACCCGTCCCCCACCCTCCCAGCAAAGG
CAAGGGTAAAGCCCTTGCTCATGAAGCCTCCCAAGCACGCGGGGGGGCAG
CTCCAGCAGTGCTATCCTCTCAAATAGGTGAGGGGTCAGTACCAGCATCA
ACAGCACCGGCAATATCAGCGGCACCAGAGGCCGCAACAGGGGCAGCAAC
ACCGGCACAACTCGCAGCAGCAGCAGCGGAAGTAGCCGCCGCCGCGGGGG
CGGCAGCGGCGAGACCAGCAGCAAGCGGAGGTCACGACCGCGGAGCGCGC
CAACAAGGACGAGAAGGGGGGCTGAGCGGCCGTGAAGGAGGCAGAGGAGG
GGGGATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCATGGGGCAGCAG
CGCCAGGTCGTGGAGCAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGG
GCCGGCGATACTTCAACATCCAGTGCGCAGGAACGCTTCTTTCAAGAAGT
GAAGGACAAGATCGACCGGAGTATCACCCTTGAGGAAGGTGGTGTGAAAG
GCCGGTTCCCGTTTGACAACCCGCTCGTGCGTCCGAAGTGTGCCACTTTT
CAGCCATCACCAGGATGTGGGGGCAAGGGCGCACCTGATGGCTGGAACCC
TAAGGGGCCACGCCGGGTGTTCACGGAGCACGACGTGGCGTACGTGATGG
AATTTCGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAG
GAGGCGGAAAAGCACAAGACGAGCTTCAACGCGTGGGATGCTGGGTGCCT
CCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTTCCTTTCCTTCTCACCA
AGCGATCGGGCATTGAGATTTGCATGGTGAACCGGCTTGCAGATGATTTG
GTGCATGGGAAGGACTTCTCCGCTGCTGCCAAGAACATTCGTCAGGCGCA
TACGACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTCAACA
CCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAACACT
CCGGAGAGGTTCGGCAGCTTTGACGACTCGACAAAGTACGGCGGTGCGGT
CCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATTTCCCGAAAC
TCCCCGTGCTGGAGGTGGATAGTGTGGATTGGACCCTGGAGGAGTATCAG
CACCGCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGGGGACGCTTC
GTTTAAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGGGCGAGGAGC
GCACAAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAATATGAGCAG
CTTTTTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTG
GAACACAGATGACTGCTGTGATGACCGTCAACTGCTGCAACGCATATTTC
GCGAGTTTGAGGAGGTAACGGGGATCAGTCTTTATCTGGAAGACGAGGTG
GACGCCGGAGTTCAGTTGGAGCTCCTGCCACAGCTGGATCTGGAGTTCAC
CCCTGCCATCGTGTACGACCCGGAGGCGGTAGCCGCTGCCTGCGGCTCCT
TTGTTTGCGGCCTACGCCACTTATTTATCCGGTGA back to topprotein sequence of EsuBft3747_2a-0001 >EsuBft3747_2 ID=EsuBft3747_2|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=426bp
MSGRGGGGGGGHGAAAPGRGAGGGAGGAAGGGAGDTSTSSAQERFFQEVK
DKIDRSITLEEGGVKGRFPFDNPLVRPKCATFQPSPGCGGKGAPDGWNPK
GPRRVFTEHDVAYVMEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLR
RLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHT
TKFMVDQLKYTSLVNTRRTSSGIFRSANLANTPERFGSFDDSTKYGGAVP
SEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASF
KFAKIIRLGAKAGEERTRPVYGFFTVFNEYEQLFFMRFVRNGFKVPTLWN
TDDCCDDRQLLQRIFREFEEVTGISLYLEDEVDAGVQLELLPQLDLEFTP
AIVYDPEAVAAACGSFVCGLRHLFIR back to topmRNA from alignment at Scaffold_54:124381..127581- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3747_2a-0001 ID=EsuBft3747_2a-0001|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3201bp|location=Sequence derived from alignment at Scaffold_54:124381..127581- (Ectocarpus subulatus male Bft15b)
ACAGCAGCAGCAGTGGCGGCGGTACCCGTCCCCCACCCTCCCAGCAAAGG
CAAGGGTAAAGCCCTTGCTCATGAAGCCTCCCAAGCACGCGGGGGGGCAG
CTCCAGCAGTGCTATCCTCTCAAATAGGTGAGGGGTCAGTACCAGCATCA
ACAGCACCGGCAATATCAGCGGCACCAGAGGCCGCAACAGGGGCAGCAAC
ACCGGCACAACTCGCAGCAGCAGCAGCGGAAGTAGCCGCCGCCGCGGGGG
CGGCAGCGGCGAGACCAGCAGCAAGCGGAGGTCACGACCGCGGAGCGCGC
CAACAAGGACGAGAAGGGGGGCTGAGCGGCCGTGAAGGAGGCAGAGGAGG
GGGGATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCATGGGGCAGCAG
CGCCAGGTCGTGGAGCAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGG
GCCGGCGATACTTCAACATCCAGTGCGCAGGAACGCTTCTTTCAAGAAGT
GAAGGACAAGATCGACCGGAGTATCACCCTTGAGGAAGGTGGTGTGAAAG
GCCGGTTCCCGTTTGACAACCCGCTCGTGCGTCCGAAGTGTGCCACTTTT
CAGCCATCACCAGGTACGCCAGAGCAGTTGTTTTTTTTTGGGGGGGGGGT
AGATAGCTGCCTATCTGTCTTTCTTTTCAGAATAAATCGTCCAGGGAAAT
TACATCCCATCCCCCGGGGGGCTATTTTTTTTGTCTCGCGTGCCTGATGT
ACTGACATACAGTAGGGGGCCCTCTATAGTGCCGGTATGTGTTCAGAGAG
CAAAGCGGCACTATACCGGGCACCGGCACTATTCAGAGTACAGAAAGACT
TGATATTCCGGTGTGTGCGAGTCGAAAACACCGGCAATATGCCGGCAACC
GGCACTATTCAACCGGCACTATATCGGGCCACCCACTGTATCTACCTCAC
ATTTACGCGCGCCCAGACCTACCGAAACTCGACCGGTTTTATCAGAAGGC
GGTACTGGTATGGATACCGGAANACCGGCACTATTCAGAGTACAGAAAGA
CTTGATATTCCGGTGTGTGCGAGTCGAAAACACCGGCAATATGCCGGCAA
CCGGCACTATTCAACCGGCACTATATCGGGCCACCCACTGTATCTACCTC
ACATTTACGCGCGCCCAGACCTACCGAAACTCGACCGGTTTTATCAGAAG
GCGGTACTGGTATGGATACCGGAATCTTGTTCCCAGAGCTCCAGGCAGTT
CCTTGTCCAGGATGTGGGGGCAAGGGCGCACCTGATGGCTGGAACCCTAA
GGGGCCACGCCGGGTGTTCACGGAGCACGACGTGGCGTACGTGATGGAAT
TTCGGTAAGTTCAGCATGCGACGAAGAGTGTTCGCTCCATAAACTTCATC
AGTCATGTTTTCGTGGCATCCGACGAATTCTGGGTTTCTGGTAGATTGGA
GTTCGTGTTGTGGTTTTCCGACGATATTGCTCGTGGTGTATGTTTTCTCC
CATGCACGTGCAGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGC
AAGCAGGAGGCGGAAAAGCACAAGACGAGCTTCAACGCGTGGGATGCTGG
GTGCCTCCGGCGTCTCCCGGAGTACATCTCCAAGGAGTTTCCTTTCCTTC
TCACCAAGCGATCGGGCATTGAGATTTGCATGGTGAACCGGCTTGCAGAT
GATTTGGTGCATGGGAAGGACTTCTCCGCTGCTGCCAAGAACATTCGTCA
GGTGAATATGCAGTGTTTCATCTGCAGCGCCTTAAGATAACGAGTTGGTC
TGGTCTTGANTTGGTCTGATCTTGGCTTTCCTAGCCTGTTCAAAACATTT
GCGGATGGTACCGCAAACGTTGCTGCGGGAAATGTCGGATCTCATAAGCG
CCGACCCGTGCTACAACGAAAACGTGTCGCCCTCGCAATGCTGTTGTAGG
CGCATACGACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTC
AACACCCGGCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAA
CACTCCGGAGAGGTTCGGCAGCTTTGACGACTCGACAAAGTACGGCGGTG
CGGTCCCGTCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATTTCCCG
AAACTCCCCGTGCTGGAGGTGGATAGTGTGGATTGGACCCTGGAGGAGTA
TCAGCACCGCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGGGGACG
CTTCGTTTAAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGGGCGAG
GAGCGCACAAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAATATGA
GCAGGTGAAAATTTCTCTTGTCTCTGTTTCGTTCAACCATCCCCAAACCC
TTTGTGTTGGTGCCATGTTTTCTGGAGCAATCACTGGAACATTATTCTCG
TAGTATGTGTGCGCTCATTCTGATGACCCAAAAAACATTTCGTTGTTACG
CATGTGTGTTCTTATTTGAAGGTGGTCTGGCAGCGTCCGATGAAGACCGG
TGCCTTGAGCGAGCTGGCGGGGAGTTGAAGCTTTTTTTCATGCGATTCGT
TCGCAATGGCTTCAAGGTTCCTACTCTGTGGAACACAGGTAATTTGCGAA
ATGATTGTAGACTTGCTTCGCTTTTCGAGGTTGTAGACCGGTGTCAGGCC
TGCTATTTTCGCAGTGACTTGCAGTATTGTCTCCTCAATCCTTTCCGGCC
CCGTTGCGTGACGCTTCACTTTGTCAGATGACTGCTGTGATGACCGTCAA
CTGCTGCAACGCATATTTCGCGAGTTTGAGGAGGTAACGGGGATAAGCNA
TTGTAGACTTGCTTCGCTTTTCGAGGTTGTAGACCGGTGTCAGGCCTGCT
ATTTTCGCAATGACTTTGCAGCATTGTCTCCTCAATCCTTTCCGGCCCCG
TTGCGTGACGCTTCACTTTGTCAGATGACTGCTGTGATGACCGTCAACTG
CTGCAACGCATATTTCGCGAGTTTGAGGAGGTAACGGGGATCAGTCTTTA
TCTGGAAGACGAGGTGGACGCCGGAGTTCAGTTGGAGCTCCTGCCACAGC
TGGATCTGGAGTTCACCCCTGCCATCGTGTACGACCCGGAGGCGGTAGCC
GCTGCCTGCGGCTCCTTTGTTTGCGGCCTACGCCACTTATTTATCCGGTG
A back to topCoding sequence (CDS) from alignment at Scaffold_54:124381..127581- >EsuBft3747_2a-0001 ID=EsuBft3747_2a-0001|Name=EsuBft3747_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1281bp|location=Sequence derived from alignment at Scaffold_54:124381..127581- (Ectocarpus subulatus male Bft15b)
ATGAGCGGCCGTGGGGGAGGTGGAGGAGGGGGGCATGGGGCAGCAGCGCC
AGGTCGTGGAGCAGGAGGTGGGGCTGGAGGAGCCGCCGGTGGAGGGGCCG
GCGATACTTCAACATCCAGTGCGCAGGAACGCTTCTTTCAAGAAGTGAAG
GACAAGATCGACCGGAGTATCACCCTTGAGGAAGGTGGTGTGAAAGGCCG
GTTCCCGTTTGACAACCCGCTCGTGCGTCCGAAGTGTGCCACTTTTCAGC
CATCACCAGGATGTGGGGGCAAGGGCGCACCTGATGGCTGGAACCCTAAG
GGGCCACGCCGGGTGTTCACGGAGCACGACGTGGCGTACGTGATGGAATT
TCGGTACAAGTGTGCGAAGTGCGCGGAGTTCAATAAAGGCAAGCAGGAGG
CGGAAAAGCACAAGACGAGCTTCAACGCGTGGGATGCTGGGTGCCTCCGG
CGTCTCCCGGAGTACATCTCCAAGGAGTTTCCTTTCCTTCTCACCAAGCG
ATCGGGCATTGAGATTTGCATGGTGAACCGGCTTGCAGATGATTTGGTGC
ATGGGAAGGACTTCTCCGCTGCTGCCAAGAACATTCGTCAGGCGCATACG
ACCAAGTTCATGGTGGACCAGCTGAAGTACACCTCTCTGGTCAACACCCG
GCGGACCAGCTCGGGCATCTTCCGCTCGGCCAACCTCGCCAACACTCCGG
AGAGGTTCGGCAGCTTTGACGACTCGACAAAGTACGGCGGTGCGGTCCCG
TCGGAGCACTATTTGCGGGACGTGTGGCGGTTGTATTTCCCGAAACTCCC
CGTGCTGGAGGTGGATAGTGTGGATTGGACCCTGGAGGAGTATCAGCACC
GCTTGATGCAGCGCTGGGACGGAGACATTCTGGGTGGGGACGCTTCGTTT
AAGTTTGCGAAGATCATCCGGCTCGGGGCAAAAGCGGGCGAGGAGCGCAC
AAGACCAGTGTACGGCTTCTTCACAGTCTTCAACGAATATGAGCAGCTTT
TTTTCATGCGATTCGTTCGCAATGGCTTCAAGGTTCCTACTCTGTGGAAC
ACAGATGACTGCTGTGATGACCGTCAACTGCTGCAACGCATATTTCGCGA
GTTTGAGGAGGTAACGGGGATCAGTCTTTATCTGGAAGACGAGGTGGACG
CCGGAGTTCAGTTGGAGCTCCTGCCACAGCTGGATCTGGAGTTCACCCCT
GCCATCGTGTACGACCCGGAGGCGGTAGCCGCTGCCTGCGGCTCCTTTGT
TTGCGGCCTACGCCACTTATTTATCCGGTGA back to top
|