EsuBft1010_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1010_8a-0001
Unique NameEsuBft1010_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:54055..57976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1010_8
Protein domainsSSF57959
Protein domainsG3DSA
Protein domainsIPR004827
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length86
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-14_003470.1
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003700
GO0003824
GO0043565
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_8aEsuBft1010_8aEctocarpus subulatus male Bft15bgeneScaffold_54 54055..57976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_8a-0001EsuBft1010_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 54055..57976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_8a-0001-exonagat-exon-109821Ectocarpus subulatus male Bft15bexonScaffold_54 54055..54327 -
EsuBft1010_8a-0001-exonEsuBft1010_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 54592..54633 -
EsuBft1010_8a-0001-exonagat-exon-109820Ectocarpus subulatus male Bft15bexonScaffold_54 55367..55438 -
EsuBft1010_8a-0001-exonagat-exon-109822Ectocarpus subulatus male Bft15bexonScaffold_54 56502..56559 -
EsuBft1010_8a-0001-exonagat-exon-109823Ectocarpus subulatus male Bft15bexonScaffold_54 57561..57976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_8a-0001-cdsEsuBft1010_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 54055..54327 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1010_8a-0001 ID=EsuBft1010_8a-0001|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=861bp|location=Sequence derived from alignment at Scaffold_54:54055..57976- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGGCAACGGGGCTAGGGATACCCCAGAACCAAATACACGGCGC
AGCGCCGACCGGAGCCGGGGGAGTTGGCGGCGGCGGTGCAAATAGCGGAG
GCGTCTATACGCCAGGGTTGGTACCAGGGGGGATGGGGTTCATGCCGGCC
ACAGCAGCAGCAGTGGCGGCGGCGGCGGCGGCGGTTTCCCCTGACCCGGT
CTCCGACACGTTGTTACCACTAGCACCGTCGTCAGCGGTGACGGGCGGGG
CGGGGGGAATGGTGGCGCCTGGTGTGGGGCGGGAGGCCGGGGACGGAGGG
GCAGCGGGGATGACGAGAGGCCTGGCGGCGGCGGCTGCTGCCGAAGGCAA
GCAGCAATGGAGGGAGGGGGGTACGGTCGCCGCGATGAAGTCGAAGGAGC
AAGCGGTGCGGCGAAGAGAACGGAATCGCGTCCTCGCGAGAGAAACTCGT
TTGAGGAAGAAGTTTTTCTACGAGTCTCTCCTACAGCGCATGGCGGCCCT
GCGCAAAGACAACCGAAAATTCAAGACCATTCTCAGGGATAGGCTGGGCG
AGCGGGCGCAGCAGGTGGTTTTCGATTGCACTTCAGAGTTGTCCCGACAA
GTCACAGTCGGCAGCATGGAGGACGCCGAGGGGACGGACGGGGGCGTGAC
GATGACGATGGTGATGACGGACATGCAAGTTGATGCAGAAGTCGCCGCTG
CGGCGAAGGGCGGGGGGGGTAAGGGTACGGGGTCGAGCAAACGCGGCGGC
GGCGCCGGTGGTGGTGGTGGTTGCGCCGGCGCTTCCACGCGGGGTCTTAG
CAGGCCCGATTACCGCCTCGTGAAGAGCATCGAGATGGTTAGTGGATCGA
ACGTCGAGTGA
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protein sequence of EsuBft1010_8a-0001

>EsuBft1010_8 ID=EsuBft1010_8|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=286bp
MAAATGLGIPQNQIHGAAPTGAGGVGGGGANSGGVYTPGLVPGGMGFMPA
TAAAVAAAAAAVSPDPVSDTLLPLAPSSAVTGGAGGMVAPGVGREAGDGG
AAGMTRGLAAAAAAEGKQQWREGGTVAAMKSKEQAVRRRERNRVLARETR
LRKKFFYESLLQRMAALRKDNRKFKTILRDRLGERAQQVVFDCTSELSRQ
VTVGSMEDAEGTDGGVTMTMVMTDMQVDAEVAAAAKGGGGKGTGSSKRGG
GAGGGGGCAGASTRGLSRPDYRLVKSIEMVSGSNVE
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mRNA from alignment at Scaffold_54:54055..57976-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1010_8a-0001 ID=EsuBft1010_8a-0001|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3922bp|location=Sequence derived from alignment at Scaffold_54:54055..57976- (Ectocarpus subulatus male Bft15b)
ATGGCGGCGGCAACGGGGCTAGGGATACCCCAGAACCAAATACACGGCGC
AGCGCCGACCGGAGCCGGGGGAGTTGGCGGCGGCGGTGCAAATAGCGGAG
GCGTCTATACGCCAGGGTTGGTACCAGGGGGGATGGGGTTCATGCCGGCC
ACAGCAGCAGCAGTGGCGGCGGCGGCGGCGGCGGTTTCCCCTGACCCGGT
CTCCGACACGTTGTTACCACTAGCACCGTCGTCAGCGGTGACGGGCGGGG
CGGGGGGAATGGTGGCGCCTGGTGTGGGGCGGGAGGCCGGGGACGGAGGG
GCAGCGGGGATGACGAGAGGCCTGGCGGCGGCGGCTGCTGCCGAAGGCAA
GCAGCAATGGAGGGAGGGGGGTACGGTCGCCGCGATGAAGTCGAAGGAGC
AAGCGGTGCGGCGAAGGTGAGTGGGGTTTTGTATTGTAGCGGCTTCTTCT
TTCCTTGTCGGGGGGAAAGGCGGGGAGTTTGCTATGCCTTTGGTGTTAGG
CCATTGACAACGCGGGTTCTCGAGGGAGGTATGGAGCATTGTTCAGCCCA
CCTATCCTGTCGATATCACTTCCCGCCTGCTCAAACCCACCTCCTATGCC
CCAGTACAGCTACCGTCTTCGCCTGGCTATTCTATGCCTAAAGGGGGGTT
GTAGGGAAAACGTTCAAGACGGGGGCCGTGTCTATCACCAACGGTGCTCG
CTCGCACGCATGAATGTTGGGGAGGACATGTTTTGGACTGGAAAAACCCG
CGCCTTTTCTTTCCGAGTATCCGCGTTATTCATTGATGGAATCTTTGTTC
TTGAAAGTGTGCTGTCGAGCTGTGCCGGCAGTGCATACACCTCGGAGCAT
ACTTGCAAGGCCGGGGGGCCAGAGGTTGATTCATTGGACAGCCAATATCT
GGGGATGACCATCTATCTTCTCCTCTACCGCGTGGGCCGATGTCGTTGCA
ACCGTTACGCTGACGGCACGTCTTGGGGGGGGGTGATTTCTGTTCCTGTG
GACGTCGCATCCGTCCTGGGTCGACTCCTGTTTCGCGGCTGACGAACCAG
ACTGCAAACATATGGCGAGCCTGATCCCGCGCGTGTTGGTGGTCGGCTCG
GCTGTCAGCACAACCGACCGGCCTTGCCGCGCCCTCGCCGCCGACAACGG
GTTGGCTGGCACCAACGAGACGGGCGGTTGGCTGTGTGTGTAGCCGTTGA
GCGGCTGGCGTTTTATGTAATCGTTGTGCAAACCCCCACGCCGAACCATC
TCCGTCGCCTCTGTCTTCGTGTGTCAACCTCTCTCTGCTTTTTATTATTA
ACACCGACGATGACGATGACGATGACGATGACGATGACGATGACGATGAT
GATGATGGCACCAACGGCACAAAAACGAACGGATGGGCGGGGCTGAAACT
CAACCTCAACCCGGCAGAGAACGGAATCGCGTCCTCGCGAGAGAAACTCG
TTTGAGGAAGAAGTTTTTCTACGAGGTGACGGATCCAACGAATGCACTCA
CGTTTCACGCGTCACGGGTGTATGAAGAGATGTGCGCACATTGCTTCTTC
GTGGGTGTCACCCCCAAGTCGAAGCCTGGGTGGAACTTTAGAGGCATCCC
TCGTGTAGAGTGGAGGAGGCCCATAGGTTTGTTTTTCGACGCCCAAAAGG
CGTGTGTTGTGTTTTCCTTTAGAAAATTCCTGGGAAGTTCCGTTGGCCGG
GAAGGGCAGAGATTGGACCAGAGCCGAGAGCACCGACAAGAGAGATGAAG
AAGGGGGGGAGGGGTTCCACTTGAAGCAAAGGGGTTCGCACTTCGTCGAA
TCGGGCGCAAATGCCAATAGAGTGGTGTTGCGGAAGGTCGGCGGGGTGGG
CCCATCGATCGGCTCTGGCCCGAGTAAGCGGCAAGGTTCTTCTCGTCTCG
TAGCGGGACAGCGTCTTAGGTAGCCGGGCGTTGGAAGGCCGCAAGAGAGG
TTGGGCTGGCGCGTGTGCGAAAGAGAGAGAGAGACATCAGGGAAGGACAG
ACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAG
AGAGCTTGGGAGCCGTCGATATGGCATCATTCGCTAGGCGGGAAAGTCGT
ATCGTGAGTATTCATACGCTTGTTGACCTTTCTTCCTAGAGTCTCGAAAG
CCAAGTCAAGCCCCTGCAACAGAGACAGCGATAATAGTTCACCAAAGGAA
TTTGTTTGTCATACAGGTATGCAAGTTGTGCAACCCAGCAAGCCAGTCAC
ACCACGAAAACACGCTTTTTCGATCCCCCCCCCCCGCCCTTCTTTTCCGC
GCCCTCTCGCCGGCGTGCTCGTCTTACCCCCTCATCCACCACCACCGTCT
TTGCCACGAATGCTGTCTCGTTTGTCCGTTTGCACCGCTGCTGCGTGTCG
CCCTCTACCCTCTGCACGTGCCGCTCGTTCGATACTGCAACATGCGCACC
TGCTGTGGCACCACTACATGTACCACCACTGCATGTGCCGCTGCTACCAC
CACTTGGGGATCGTTCTGCGTACGGACGGGGCGGGTAGTCTCTCCTACAG
CGCATGGCGGCCCTGCGCAAAGACAACCGAAAATTCAAGACCATTCTCAG
GGATAGGCTGGTGAGTCCATTGTTGTCGGGGGGGGGTGGTGTTGGTGCTG
GGACTTTGATGAGCTTGTTGAGATGTCGAGCGACGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCCCCCCCCCCCCCCG
CGTGTGAAACATTTGGACACGCGGGATGCCCAACCAACTCATGATGCATG
TGGTTTGGCACGGTAAACGCAAGGATGATGAGCATGTTCTGGTTCACCCT
TCAACCGTGGCCTGGGCCGGCGAAAACCCTGCATATCGCGCTCCCGTCCA
CGCGTTGTAGCGATGCGAGGTCGACGGTCTACCGACTACGACATGCGTTT
GCATGAGTACTCCCCCGGCCCTCCCCCCTACCCTTTTGTGCCTGCCCGGC
ACACCCGATGTTGTCCTCCCGGTTTGGTCGGGGTGCCTGTATGAGACACG
GGAGCCTTTCGAGACACACGCCCGTCGTCTCACTTTAACGTCTCAACGAG
TAACCCCCCCCCGCGCGCGCACGTGCCCCCATCCCACCACCGCTAGCTGT
TGGATATTTCCTCCCTTCATGACCGTTTGGTTTCTGCTGCTGTTGTGCCG
CTTCGCCTCCCATTTATCTATCAATTTTTGGCCGTCAACCAAGGGCGAGC
GGGCGCAGCAGGTGGTTTTCGATTGCACTTCAGAGGTGAGAAATGCGGGG
GTCCCTTGTTCAAACGTGTGCGCGTTTTCTATGAGTCGATCCTGATGGTA
GCAATCGGGTGTGAGTTCTTGTTTGAACGACGTATGTACATATGTACGCC
CACGACAAATTCACTTGTCTTCTCATGATACCACACGCCTTTCCCTCGTG
CACACCTTCCGTTTTCTGCCCCCACCTTCACTGGGCATCACGAGCCGCAT
GTTCACCTGTTGCTTCTGCCCTCTCACCCCCCCCCTTGCCGAAACAAAGT
TGTCCCGACAAGTCACAGTCGGCAGCATGGAGGACGCCGAGGGGACGGAC
GGGGGCGTGACGATGACGATGGTGATGACGGACATGCAAGTTGATGCAGA
AGTCGCCGCTGCGGCGAAGGGCGGGGGGGGTAAGGGTACGGGGTCGAGCA
AACGCGGCGGCGGCGCCGGTGGTGGTGGTGGTTGCGCCGGCGCTTCCACG
CGGGGTCTTAGCAGGCCCGATTACCGCCTCGTGAAGAGCATCGAGATGGT
TAGTGGATCGAACGTCGAGTGA
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Coding sequence (CDS) from alignment at Scaffold_54:54055..57976-

>EsuBft1010_8a-0001 ID=EsuBft1010_8a-0001|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_54:54055..57976- (Ectocarpus subulatus male Bft15b)
ATGGCGGCGGCAACGGGGCTAGGGATACCCCAGAACCAAATACACGGCGC
AGCGCCGACCGGAGCCGGGGGAGTTGGCGGCGGCGGTGCAAATAGCGGAG
GCGTCTATACGCCAGGGTTGGTACCAGGGGGGATGGGGTTCATGCCGGCC
ACAGCAGCAGCAGTGGCGGCGGCGGCGGCGGCGGTTTCCCCTGACCCGGT
CTCCGACACGTTGTTACCACTAGCACCGTCGTCAGCGGTGACGGGCGGGG
CGGGGGGAATGGTGGCGCCTGGTGTGGGGCGGGAGGCCGGGGACGGAGGG
GCAGCGGGGATGACGAGAGGCCTGGCGGCGGCGGCTGCTGCCGAAGGCAA
GCAGCAATGGAGGGAGGGGGGTACGGTCGCCGCGATGAAGTCGAAGGAGC
AAGCGGTGCGGCGAAGAGAACGGAATCGCGTCCTCGCGAGAGAAACTCGT
TTGAGGAAGAAGTTTTTCTACGAGTCTCTCCTACAGCGCATGGCGGCCCT
GCGCAAAGACAACCGAAAATTCAAGACCATTCTCAGGGATAGGCTGGGCG
AGCGGGCGCAGCAGGTGGTTTTCGATTGCACTTCAGAGTTGTCCCGACAA
GTCACAGTCGGCAGCATGGAGGACGCCGAGGGGACGGACGGGGGCGTGAC
GATGACGATGGTGATGACGGACATGCAAGTTGATGCAGAAGTCGCCGCTG
CGGCGAAGGGCGGGGGGGGTAAGGGTACGGGGTCGAGCAAACGCGGCGGC
GGCGCCGGTGGTGGTGGTGGTTGCGCCGGCGCTTCCACGCGGGGTCTTAG
CAGGCCCGATTACCGCCTCGTGAAGAGCATCGAGATGGTTAGTGGATCGA
ACGTCGAGTGA
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