EsuBft93_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft93_16a-0001
Unique NameEsuBft93_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1240600..1245906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft93_16
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length193
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft93_16aEsuBft93_16aEctocarpus subulatus male Bft15bgeneScaffold_523 1240600..1245906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_16a-0001EsuBft93_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1245568..1245906 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_16a-0001-exonagat-exon-77288Ectocarpus subulatus male Bft15bexonScaffold_523 1240600..1241284 -
EsuBft93_16a-0001-exonagat-exon-77289Ectocarpus subulatus male Bft15bexonScaffold_523 1241456..1242504 -
EsuBft93_16a-0001-exonagat-exon-77290Ectocarpus subulatus male Bft15bexonScaffold_523 1245533..1245599 -
EsuBft93_16a-0001-exonEsuBft93_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1245777..1245906 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_16a-0001-exonagat-three_prime_utr-23274Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1240600..1241284 -
EsuBft93_16a-0001-exonagat-three_prime_utr-23275Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1241456..1242504 -
EsuBft93_16a-0001-exonagat-three_prime_utr-23276Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1245533..1245567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_16a-0001-cdsEsuBft93_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1245568..1245599 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft93_16a-0001 ID=EsuBft93_16a-0001|Name=EsuBft93_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1931bp|location=Sequence derived from alignment at Scaffold_523:1240600..1245906- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGAGCCCCCGTACGCTTCGCATCTCAGCCGCCGCGCCCCTGGGC
CGTAGTAGCAGGGGAGATCGACACGAAACACGAGGACACGACCACACGCG
CCACCCACCACGCACCACGCACCACGCTCCGACAGCAGGTCAAGGCACAC
ACTCGGGAGTAATCGGGCGCAACCTTTCCTCGGCATCGCAATCTCAGTTT
CTGGGACTCCATGCTGCAGTTCATGACGGGCCTGCGTCGCATAGCCTCCG
GACTCCTGACCATCGCCAAGTCGCACTACGGGAACCCCAAGATCATGTTC
TTCCTGTCCCCCCTACGCCCGCGGGGACGACAATCTCATCGTGGAGGATA
CCCCGGCCGCAAACGTGCACGTCGACGATGCCGAGCTCGGCGCATTTCTC
GACGAGATGGCCGGGTCAACGCTCAGCATCCGTATGGATCGCGAAATTGC
TGGCAATGTTCTTGGCCTTTGCGCTTGGTGTGGTGTTTGGTGGGAGTGGG
AGGGAGCAGGTTGCTTTTTATATAGCGTTCGGCAATAGTCTATAGGTAGT
CTATCTCGTGAAGCGGTGGCACTTTTTTTTGTCACTATGTGTTGTCGAGG
CACGTGTCATACGCCTGCACTTCGACAAGTGCGTGCGTACCTTGGACGTG
ATACACACAACGCAGAGGCTGTTTTGCGTTTCGCCGGGGGGAGGGGCACC
CAAGTATGGAGGTGCTACGAACAAGAGGCAAGTAGGTTTGGTCGGAGCTC
AATTTCGTTGAGTTGAGTCCGTATGCACAAGAATGTGGGCTTGAGCGGGT
ACATGCAAGTTGCGTGAACCTGAGGGCAAGGGGTGCGATTTTTTTGTAGT
GAGGGAATGGGTTGATGCAATTTGTTTCGGGTCATTTGTGTCCTTTTGTT
ATAGATCGTGTGGTTCACATGAGTTCTGAGTTGGTGCACGTCGTGACTAC
GTTTTGCAATGTCGAAAGTGGTCGTCGAAGTTTGGGTTGTGAGCCCCTTA
TATGGTGGATTTTAATTGATAGATTAGGCTTTGGGATGCATCCTACTGAA
AATGGTGTCGATGAGCGATGATCGTTTTGTACTTGTAGGAGCACCAAATG
CTGCTGCGAGGGACGCAACAAGAAGGCAAATGAAATAAATATTCAAAAGG
AAAATCTAGAATTTTTCGGCGCCGTTAGTACAACGGCCACGGTCTCCACA
GGGTTTTCCCAGGGTGTGTACCCCGCGAGGGTGCCTGAGTGGCAGGGTGG
GGAGGCACGGGTAGAACAGCAGGTGCTTTGGTCAATGTTTACTTGGTTCT
AGGTACATACTTCTTTCTGCCTCCGCCTATGATTGGCTGGCCGTTTGGGG
TTAGGGTAGTTAGAGTTTTAGTCGGTTTCATGCCCCTGCCAACGCGGAGA
ATGTTTAGAAGCACTGCTGCCTGTAGTACCAGAATATTGCGATGATTGTC
AATCAACTGGTTGCTGTTTGCGGGGACAAGATGCGGCACTTGTAGTGGTG
TTAAGAAACAACTTTTGTCATTCACTTTTTCCGCGTCGAGCTTGCCGCTG
CGGCATGCGAAGGGTGTGCTGGGTTGGTGGTGATGAGAGAATATCTAGGT
TGTTATTCTAGGTACTACTAACAACGCTGTAGGTTGGCATTACTGCGATA
AGTCTAGGTTGTTATTCTAGGTACTACTACCAATGCTGTAGGTTGGCATT
ACTGCGATAAATCTAGGTTGTTGCATTGGTCGGTGGTGCTTGGATAGGGC
TTGGTGGTGAACAAACGCTGCTGGTGTAGGTCTGCGGGACCGCCAAGTAA
GTGTGGGTACATATCCGATGTGCACCCCCCTGGGTACATCGAATAGTGGT
GTTGTCTTTTGTCCATGTTCTTGGCACCGAAACCTACAGCAGTGGGCGTC
GCAACCCCAGAGGAGCTATTCGGCGTTGTTC
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protein sequence of EsuBft93_16a-0001

>EsuBft93_16 ID=EsuBft93_16|Name=EsuBft93_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MDGAPVRFASQPPRPWAVVAGEIDTKHEDTTTRATHHAPRTTLRQQVKAH
TRE
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mRNA from alignment at Scaffold_523:1240600..1245906-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft93_16a-0001 ID=EsuBft93_16a-0001|Name=EsuBft93_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5307bp|location=Sequence derived from alignment at Scaffold_523:1240600..1245906- (Ectocarpus subulatus male Bft15b)
ATGGACGGAGCCCCCGTACGCTTCGCATCTCAGCCGCCGCGCCCCTGGGC
CGTAGTAGCAGGGGAGATCGACACGAAACACGAGGACACGACCACACGCG
CCACCCACCACGCACCACGCACCACGCTCCGTAAGTGCCGGTGTAATGTC
GATACTTAGCACTGGATGCCACAGCTTGCCTTTCTGTCGACGGGAATCGA
TGTTTTGATGCGGTTCGGATTGGCGGGAAAGCATGTGGAGGTCCACCCCA
ACACGCAAAACTGCTTTGACCCAGCCGGTCGCTAGAGGGTAAAGTGGACC
TCAACAGGACAGCAGGTCAAGGCACACACTCGGGAGTAATCGGGCGCAAC
CTTTCCTCGGCATCGCAATCTCAGGTGAACGCTGCCTCATATAGACATTA
ACCGGCGCACGCACACCCGGACGCACGGAGAATACAGCAGCAGCCTACAC
TCAAGAGTACAACATTGCCAACGGCAACGAGAGAAAGGCCCGCATGCCAG
CAGAACAGCAGTCAGTCTCTGTTGGTGCGTGTAGCAGACGTCACGCTCGC
ATGCTTGCACGCTTGCGCACATAAGCGTCTCTCACATCACTTCGCCAACG
CGTGCTTTTCTTGACGCGTTTGCGCAAAGCTTGTACGGAGAAATGATAGT
TTCTGTAGGTCGCGTGAGATACCACATCCGGTGTATGTTATGCTGTACTT
TATGAACCCTTCTCTGTACTGCTGTTACGTGCGACGCGTTTGTGCATTCG
TACCATGTATCCCCTACCTGTATTTGTCTAGGTCAACCTACATGTATGGC
ACCACCACTGTTATGACCTTGATCATTGCTGTTTGTATTGCATGGCTGCT
GATGATGATCCGGCGTTGAGTTTTACACCCCTCTTGCTGTAGGCATAGTC
TATGCATACCTCGTCTTACAGTCGAACCTCGCTTAACTTAACCAAAATTA
AATTAACTCCCTCGGTTAACTTAACTATTTTTTTTGGAAACATGGTGGCC
CGCAGAATGTATTTTAGATGGGGGGTATCAAATATAGCTCGCGGACCCCC
TGAGAACAGCGGTTTTACTACACACAGCCGTTGATGATGGCGCTTCTGAC
GATGAAGATGGTGAGGGCAGTCCAGAGTCATGCATCACATCTTCGATGAC
AGAGGGCGACGTTCGCAGTAGCCTAGAGACGCTCCTACTTGCACGCGAAC
GGAAAGGGTGGGGAGCACCGCGAAACCCACTACCTGCTTTCGAAGGCTGT
GCATTCGTTCACTCACGAAACTCAAGTCAAGCGGCGAGCTAAGGATGGGG
GGGAGCTGCAGGCAACTATGCGCGACATGTGGAGGTCGTAGCGTGTGCGG
TTCCGAACCAACGCCGTGTTTGGGGTGGCCTGAGTATGTCTTGAAGGCGT
CGCAGCACATGGGAATAACCCACAGGAGTGATTGTAGAGTGCGCTCGGCC
AGAGTTTTGCGAAGTTTGCGCGGAGGTTCAAGCGTTTCAACTATATCATC
TTGGTTATAGTGTTCAGTAAAATGGGAACAAAAAATATTTTTACCTCCAA
CTTTTCGGTCTCCTCGTTCGTGACACACATACTGGAGCTCAATGCGCGTC
TATTGACGTATTAACCGCCTCCATTGGCCCCGGGGATGGTGAGTTGTGGT
CCCCTGAATCTTATCTTAACTCCCCCCGCTTAACTTAACTTTTTTCAGCG
AAAAACCATGTGTTAAGTTAAGCGAGGCTCGACTGTACATCAGATTTCTC
CCATGGATTGTCCCCGCTGTTACCTTGTGTAATTTCGATGGAAGAAGAAA
GTGGGTGGTGCCACTCGGCGGTATTGCCTGTTCGAACTCTGTTCAACTAC
ATATGTGTGTGGTAACAAGAGCGGTGCGGATTATGAGATATCTGTGTCCT
GTAGGGAGTGCACATGTGGTCTTGCCCATCCCACGTTTCTATTGTTCTCG
ATTTGGTGCGTGCCTTTTTCTGTTTTTTTAGCGTGCTAGGGACATGGTCG
GGCGAGTCACCAAGGCGCACATGGCGTCGACACGCCAGGACCTGTCCGAG
AGGCAACTCCTGGGAGAGGATCGGCTACACGAGCACTTCGTGGCGCAGGT
AATAGTTTGTTTCCATCTGGTTTGCCCTCAACGACAACTGGTGTCCCCCC
GTAACTTTTTTTATTATCACACAAATGTACACGATCGCAGTTCAGAACCA
TCGCTTGTTCCGCGTCCCCACGAGACGAAGTCGTGTATATGCACACGTGA
GGAAATACAGAGATTCGCCCTCCTGACGTTGTAAGAGAACACTCCAGCGC
GCAGCAGAAAACGAGTAAAATAATGAGACAAGAATATACGAACGCCGGAG
CATGTACACAACATTCGATTGCATGGCGGGTACATCGTGCCGGTAGGAAG
CACCAGCACGGTACACTCACGGCACCGCTACACATGTCTCCACATGCACA
CATTCAGCAGCACCTTTATTATTTCCCGCTCTGCCTGCTGACGTCCATGT
TGTACACCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGACATCG
CCGCCCACCCCGTCAACGAGAATGGCAAGCACGAAAACATGTGTGCGAGT
GCACGAGGGAGGCGAGGGCGTGGGGCAGGCTTTCCAACGACGGATACAGC
ACCACCAACGCCAGGGCATATTCCAAGAGAGGTGAGCTTTCCCGAACCGA
TCTTTCCACAACCTCAACTGCAAGCAGGGGGAGTATGTCTCCACGCGAGC
TACACGGCGGGCGGTTCTGCTGTTTTCCTATTTTGACACGTGGTGGAATG
AGCCTTTTCTCTCCGGTTGGGCATCAAGTCAAGTACAGCGTACTCGCTTT
TTGCTGGCCGTCGTTGCCGAATCTGGGTGTGGTTTTCTCCATTGCATTGT
CGCATGGTTGTTCCCGATTGTAACTAGCGATCGTTTGGAGTTGTCAGCAA
TTTCGTGCACGTGGAGAGCCGGCGATCCTGCTGGTTTGAAGGAGCAGGTA
AGGTATGTGTGACAGCACGCATGCAGTGAGTGCCCCCCGCTTGATTTGTT
CACTCTTTTAAGTATTGCTTCGTGCAGATGCAGTTTATTTGGGCCAGACC
TATTTCGCTTTCTTCTGTACGTTTTGGCATTCCCCGATTAGAGTCGCCCC
GCGGATGATATTTTCGTTTTTTCAGACCCTCCCCCCTCACCTCCTGCTCT
TGCGCTGCTACCAACACAATCGTTCACCTCCATGTTGTACGTCGCGGAAT
AACACAGTATTATTCTCGTGTTCTTATTCTCGTCACGCATTTGCATGTAA
CCCCACCTAACCGCGTTCGTCCACTCTGGAATCAAACATGAAGTTTTTGT
TTCATGTCGTTGCGCATCCATGCCTTCCCTTTCTCTACGTGCTTTGGAAC
AGTTTCTGGGACTCCATGCTGCAGTTCATGACGGGCCTGCGTCGCATAGC
CTCCGGACTCCTGACCATCGCCAAGTCGCACTACGGGAACCCCAAGATCA
TGTTCTTCCTGTCCCCCCTACGCCCGCGGGGACGACAATCTCATCGTGGA
GGATACCCCGGCCGCAAACGTGCACGTCGACGATGCCGAGCTCGGCGCAT
TTCTCGACGAGATGGCCGGGTCAACGCTCAGCATCCGTATGGATCGCGAA
ATTGCTGGCAATGTTCTTGGCCTTTGCGCTTGGTGTGGTGTTTGGTGGGA
GTGGGAGGGAGCAGGTTGCTTTTTATATAGCGTTCGGCAATAGTCTATAG
GTAGTCTATCTCGTGAAGCGGTGGCACTTTTTTTTGTCACTATGTGTTGT
CGAGGCACGTGTCATACGCCTGCACTTCGACAAGTGCGTGCGTACCTTGG
ACGTGATACACACAACGCAGAGGCTGTTTTGCGTTTCGCCGGGGGGAGGG
GCACCCAAGTATGGAGGTGCTACGAACAAGAGGCAAGTAGGTTTGGTCGG
AGCTCAATTTCGTTGAGTTGAGTCCGTATGCACAAGAATGTGGGCTTGAG
CGGGTACATGCAAGTTGCGTGAACCTGAGGGCAAGGGGTGCGATTTTTTT
GTAGTGAGGGAATGGGTTGATGCAATTTGTTTCGGGTCATTTGTGTCCTT
TTGTTATAGATCGTGTGGTTCACATGAGTTCTGAGTTGGTGCACGTCGTG
ACTACGTTTTGCAATGTCGAAAGTGGTCGTCGAAGTTTGGGTTGTGAGCC
CCTTATATGGTGGATTTTAATTGATAGATTAGGCTTTGGGATGCATCCTA
CTGAAAATGGTGTCGATGAGCGATGATCGTTTTGTACTTGTAGGAGCACC
AAATGCTGCTGCGAGGGACGCAACAAGAAGGCAAATGAAATAAATATTCA
AAAGGAAAATCTAGAATTTTTCGGCGCCGTTAGTACAACGGCCACGGTCT
CCACAGGGTTTTCCCAGGGTGTGTACCCCGCGAGGGTGCCTGAGTGGCAG
GGTACGCACAGGGTGTGGGATCGGTACCCTGGCAGGGTACCCACCTTGCA
GCCGGGTCAAGCCTGCAAGGTAGTCTTTTAGGGTGACCTCGCCGGGGTGA
TATCTCCCCACCCTGGCAGCGTAGCCGAATGGCTACAGGTGATGTCGGGA
CAACTACTGTACATACATGCAGGTGGGGAGGCACGGGTAGAACAGCAGGT
GCTTTGGTCAATGTTTACTTGGTTCTAGGTACATACTTCTTTCTGCCTCC
GCCTATGATTGGCTGGCCGTTTGGGGTTAGGGTAGTTAGAGTTTTAGTCG
GTTTCATGCCCCTGCCAACGCGGAGAATGTTTAGAAGCACTGCTGCCTGT
AGTACCAGAATATTGCGATGATTGTCAATCAACTGGTTGCTGTTTGCGGG
GACAAGATGCGGCACTTGTAGTGGTGTTAAGAAACAACTTTTGTCATTCA
CTTTTTCCGCGTCGAGCTTGCCGCTGCGGCATGCGAAGGGTGTGCTGGGT
TGGTGGTGATGAGAGAATATCTAGGTTGTTATTCTAGGTACTACTAACAA
CGCTGTAGGTTGGCATTACTGCGATAAGTCTAGGTTGTTATTCTAGGTAC
TACTACCAATGCTGTAGGTTGGCATTACTGCGATAAATCTAGGTTGTTGC
ATTGGTCGGTGGTGCTTGGATAGGGCTTGGTGGTGAACAAACGCTGCTGG
TGTAGGTCTGCGGGACCGCCAAGTAAGTGTGGGTACATATCCGATGTGCA
CCCCCCTGGGTACATCGAATAGTGGTGTTGTCTTTTGTCCATGTTCTTGG
CACCGAAACCTACAGCAGTGGGCGTCGCAACCCCAGAGGAGCTATTCGGC
GTTGTTC
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Coding sequence (CDS) from alignment at Scaffold_523:1240600..1245906-

>EsuBft93_16a-0001 ID=EsuBft93_16a-0001|Name=EsuBft93_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_523:1240600..1245906- (Ectocarpus subulatus male Bft15b)
ATGGACGGAGCCCCCGTACGCTTCGCATCTCAGCCGCCGCGCCCCTGGGC
CGTAGTAGCAGGGGAGATCGACACGAAACACGAGGACACGACCACACGCG
CCACCCACCACGCACCACGCACCACGCTCCGACAGCAGGTCAAGGCACAC
ACTCGGGAGTAA
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