EsuBft97_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft97_5a-0001
Unique NameEsuBft97_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:417432..418622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft97_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length93
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft97_5aEsuBft97_5aEctocarpus subulatus male Bft15bgeneScaffold_523 417432..418622 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_5a-0001-exonEsuBft97_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 417432..417748 +
EsuBft97_5a-0001-exonagat-exon-41807Ectocarpus subulatus male Bft15bexonScaffold_523 418009..418622 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_5a-0001-exonagat-five_prime_utr-15450Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 417432..417682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_5a-0001-cdsEsuBft97_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 417683..417748 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_5a-0001-exonagat-three_prime_utr-23732Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 418231..418622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft97_5a-0001EsuBft97_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 417683..418230 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft97_5a-0001 ID=EsuBft97_5a-0001|Name=EsuBft97_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=931bp|location=Sequence derived from alignment at Scaffold_523:417432..418622+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCTACCGCACCCAAACACAATATATTGTAAGGCCTGGTGTTAGCAGTGG
GTATTGGCGTCTGAGCGGTTGGAGCTGGGCCATCGGGGCAGCGGACACCA
TTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTGCATCG
CTCGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTACAGCTGGG
ACAGCGCTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGA
TATGTCTGGAACGGAGGAGGACGCAGCTCTGCGCACTAGGTTGGATGAGG
CGCTACGAGCCATAGATGAGGCCAAGGCTGAGACGAAGGAGGCCAAGGCT
GAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCGGCGGGTGCACCTGC
CAGCACCAGCCCAGGAGGCGACGGTCTGGTTGCTCCTGGGGGGGCTTCAT
CTGCACCGGTGAGACCAACGTGGCCAGGCGGGGTGAGTCATGATGGCGGT
ACTGGGGTGCCGGGTTTGCCTTTGGGAGGTATTGTCTGAACTCCTGTGCC
TAGAACCCGTCAAATTGCACCGCCGACACCTTTCTCAGTTGACGGAGACG
CTTTCTGGCCTACGTGGACAACCATATTCTCCAGCACACAATCTCCGGCA
GTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGACTCGC
CAGTGTGGTCGTTCCTACACCCCGGTTTGTACTTCATGTCCGGCCTTTGG
GCACAACGCGTGGAGACAATGGCACGGGAAGAGCCACGATCGAAGCTGCG
TAAGAGCAAGTGGTGCAGAAGGCCGGTTGCCGAGAGAATCACCTTCGATC
TCGTCATCTGTCGGTCGATCTACAGTCACATCAGTCTCAGTTTTGTTGAA
CGCCCCTCGCCTGGTATTGTATAGCGTTGTC
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protein sequence of EsuBft97_5a-0001

>EsuBft97_5 ID=EsuBft97_5|Name=EsuBft97_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MSGTEEDAALRTRLDEALRAIDEAKAETKEAKAETEELRAAQRRSAGAPA
STSPGGDGLVAPGGASSAPVRPTWPGGVSHDGGTGVPGLPLGGIV
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mRNA from alignment at Scaffold_523:417432..418622+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft97_5a-0001 ID=EsuBft97_5a-0001|Name=EsuBft97_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1191bp|location=Sequence derived from alignment at Scaffold_523:417432..418622+ (Ectocarpus subulatus male Bft15b)
AGCTACCGCACCCAAACACAATATATTGTAAGGCCTGGTGTTAGCAGTGG
GTATTGGCGTCTGAGCGGTTGGAGCTGGGCCATCGGGGCAGCGGACACCA
TTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTGCATCG
CTCGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTACAGCTGGG
ACAGCGCTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGA
TATGTCTGGAACGGAGGAGGACGCAGCTCTGCGCACTAGGTTGGATGAGG
CGCTACGAGCCATAGATGTTGCCAAGGCCGAGACGANCATTTTCATAGCT
GGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTGCATCGCTCGTGCGGTG
GCCATTGCGGGGACCGGGACAGCAGGGTTTACAGCTGGGACAGCGCTTCG
AGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGATATGTCTGGAA
CGGAGGAGGACGCAGCTCTGCGCACTAGGTTGGATGAGGCGCTACGAGCC
ATAGATGTTGCCAAGGCCGAGACGAAGGAGGCCAAGGCTGAGACGAAGGA
GGCCAAGGCTGAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCGGCGG
GTGCACCTGCCAGCACCAGCCCAGGAGGCGACGGTCTGGTTGCTCCTGGG
GGGGCTTCATCTGCACCGGTGAGACCAACGTGGCCAGGCGGGGTGAGTCA
TGATGGCGGTACTGGGGTGCCGGGTTTGCCTTTGGGAGGTATTGTCTGAA
CTCCTGTGCCTAGAACCCGTCAAATTGCACCGCCGACACCTTTCTCAGTT
GACGGAGACGCTTTCTGGCCTACGTGGACAACCATATTCTCCAGCACACA
ATCTCCGGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATA
CTTGACTCGCCAGTGTGGTCGTTCCTACACCCCGGTTTGTACTTCATGTC
CGGCCTTTGGGCACAACGCGTGGAGACAATGGCACGGGAAGAGCCACGAT
CGAAGCTGCGTAAGAGCAAGTGGTGCAGAAGGCCGGTTGCCGAGAGAATC
ACCTTCGATCTCGTCATCTGTCGGTCGATCTACAGTCACATCAGTCTCAG
TTTTGTTGAACGCCCCTCGCCTGGTATTGTATAGCGTTGTC
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Coding sequence (CDS) from alignment at Scaffold_523:417432..418622+

>EsuBft97_5a-0001 ID=EsuBft97_5a-0001|Name=EsuBft97_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_523:417432..418622+ (Ectocarpus subulatus male Bft15b)
ATGTCTGGAACGGAGGAGGACGCAGCTCTGCGCACTAGGTTGGATGAGGC
GCTACGAGCCATAGATGAGGCCAAGGCTGAGACGAAGGAGGCCAAGGCTG
AGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCGGCGGGTGCACCTGCC
AGCACCAGCCCAGGAGGCGACGGTCTGGTTGCTCCTGGGGGGGCTTCATC
TGCACCGGTGAGACCAACGTGGCCAGGCGGGGTGAGTCATGATGGCGGTA
CTGGGGTGCCGGGTTTGCCTTTGGGAGGTATTGTCTGA
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