EsuBft97_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft97_11a-0001
Unique Name	EsuBft97_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:336504..339096 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft97_11
Protein domains	Coil
Protein domains	IPR011989
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	241
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-15_001400.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft97_11a	EsuBft97_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 336504..339096 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_11a-0001-exon	agat-exon-41861	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 336504..336581 -
EsuBft97_11a-0001-exon	agat-exon-41860	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 336646..338718 -
EsuBft97_11a-0001-exon	EsuBft97_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 338833..339096 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_11a-0001-cds	EsuBft97_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 336504..336581 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft97_11a-0001	EsuBft97_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 336504..339096 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:336504..339096-
coding sequence from alignment at Scaffold_523:336504..339096-

spliced messenger RNA

>EsuBft97_11a-0001 ID=EsuBft97_11a-0001|Name=EsuBft97_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2415bp|location=Sequence derived from alignment at Scaffold_523:336504..339096- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCGTCTGCGCGCGGGCTGGCCATACGCCATGCCGTCGATGGCTG
CTGCAAGAACCTGCCGGCGACACCAGGACATGCTCCCGGCGCGACAAGAC
TCCTACAGCAATGGGACCGAGCAACACGACACCAGCGTGATGAGTTGATG
AAAGCGTTGGCCGATCAGCTTCTCATCAGCAACAACGAGACCTCCTGCCC
GCAGCAGCAAGCTTGCTGTTATTCAGGCGCAGACTATGAAAGTGGCATCA
GCTTAGAGAAGGAGGTTGGACTGCCTCCTCCGACTGAACCAATCGGCGAT
GGTGTGCCTGGTGAGGCGATTCTACCCCCTCAACACCCGTCGCCAAGGGC
GAATGTTGAGTTTCTTTCGCTACTCGGCCACCATGCTGGCTTGCTGGCGA
CCCGGTTTTCCTCGCACTTGCAGACATCGTTCGCGTGCGGTCATGAACTT
GGCCCCTGTCTTCGTGTGGTCACGCTGCTCGCAGAATCCGCCACTGCTGG
GAGAACCGTTCAAGGTAGTAGTGACGACGGTGTCCAAGATTACTTTGACC
CACGCCTAGTAGGCCATCAGTTTTGCACCCCGGGATTGATCAACACAGCT
CTCCAGGTAGCAGTGTCACATCAGATGAGTGCTGTAACCAGTCAATTATC
GGCGACCGAGGCAGACAGGAGGGTGCGACACCGAAGACGACGACAACGCG
GAAAAATTACTCCAACGGTTCCTCCACGCGCATTGTCACCTGAAGAGGAA
AAGGACAAGGACGAGGAGAAGGACGAGGACGAGGAGGAGAAGGACGAGGA
GAAGGGGGAAGAGAAGGAGGACAAGGAGAAGAGGGAGGAGGAGGAGATCG
AGGATGAGGATGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGAAG
GAGTTGGAGGAGAAGGAGTTGGAGGAGGAGGACGAAGAGGAGGAGGATGA
AGAGGAGGAGGAGGAGGAGACGAATCGGGCGAAAGCACTAGGCCTGCTGG
TGGCGCTCGTTCGCGCAGGAGGTAAAAGAGTCAAGGACTACATTTTGTAC
CCTTATCCTTCCCCCTCATCCTTACTAGAGCTGTCCGAAAATTCTTCACC
CATATCGAGAGTTGGTGACCCTCTCGGGCTCATTGTTATGGCGCTGTGTC
GACCAGAGTGCGGAGCCGGTACACGAGAGGCCGGCAGGCATCTGCTGGTG
GAACTAGGCCTGGGCGGCCACGACTCCACCGGGAATGCAAAGGTGTGGAG
CGCCGTCCTCTGCTTGCTCGATGAGCGAGACGTACAAGATCCCGCCGGTG
CCCAGATTCTCGGTTTCCAGGTTGCCCAAGAGCTATTGGTGCGGAAGTTG
TCGGAACAACGAGGTCGGAATGAAACCCTTCGATATCGTGGTGACAATGT
CGGAAGTGGTGTACTTGATGGCGCGCTACCGAGCCCACAGAAGAACCGAC
AACGGCTGATGCGCCCGGAGCTGACACTGATGCCTTCGGTACTGAAGCTC
TCTCTGAGCCCGAGCTACGAAGTCAGAGAGGCCGCCGCAGGGTTAGCCGT
GCTGTTAGCCACGGAATGCCCCCGCCCGTGCTGCTACCTCGTGGTCGCGG
GCTTGGCCGGGCTTTTCGGCTTGGTTTCTGGGGTGGAGAGAGGCGCGCCC
ATCGCCTGGATTCAACTCCAACGCGAGCGCGTGACTGGCAGGCGGTCACG
CGAACAGACAGGGGAGGACGCACACTCTGCCGACGAACAGAGTGTTAGCA
GCAGCCGAGGGTCAGACCACACGGCGGAGTCTGACGGTTATGATTCACGG
GATGGACCCCCGGCATCATCATCAGAAGAATCTAACAGGAGGGGAGCTGG
AGTCGGTGGTGGTGAAGCGATATTGGCGCTCAAGCTGCTCCGGCGGGTTT
GTGCGAGCGGACGGGGCGGAACCGGCGAGGAGGAGCTGTGCTCAGCTCTA
GCGTACGCCCTCGCCCCGCTCACCGTCCTTGACCTTGTAGTCTGCCCCCG
AAATCTGGCGGCTGACCTAAGGCCGACCGATAACAGAGACGCGGGGAATG
CGCCAGCGGGTGTCGAGGCGGACGGAGACGCCGTGATCGAGAGGCAGGTG
ACGGCCAACAGAGAAGAAGCAGGCGCTGGGGGCGACAGCGACGAAGGGAG
TGGCGAGCGCCCTCGGAGTGAGCGGCAGGCGGAAGCTGGAGGTCTCCCGC
TAAAGGAGAACGGCAATCAGCTTGGTGGCGGAGAACTGCCATCAGGCTTT
ACCCCTTTCGACGAACTGCTGGGTGTTTATGCTGGTGGTAGCGGGGATGT
AGCAAGTAGGCGACGCTTCGAGCAGCCGCCGGGAGAGGCCATCCAAGATC
TCAAGCGGAACCTCCAGAAGGACGGCCATCTCCCAGCTCCAGCACCGCCC
GCGACAGTTCGATAG

protein sequence of EsuBft97_11a-0001

>EsuBft97_11 ID=EsuBft97_11|Name=EsuBft97_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=804bp
MSASARGLAIRHAVDGCCKNLPATPGHAPGATRLLQQWDRATRHQRDELM
KALADQLLISNNETSCPQQQACCYSGADYESGISLEKEVGLPPPTEPIGD
GVPGEAILPPQHPSPRANVEFLSLLGHHAGLLATRFSSHLQTSFACGHEL
GPCLRVVTLLAESATAGRTVQGSSDDGVQDYFDPRLVGHQFCTPGLINTA
LQVAVSHQMSAVTSQLSATEADRRVRHRRRRQRGKITPTVPPRALSPEEE
KDKDEEKDEDEEEKDEEKGEEKEDKEKREEEEIEDEDEAEAEAEAEEEEK
ELEEKELEEEDEEEEDEEEEEEETNRAKALGLLVALVRAGGKRVKDYILY
PYPSPSSLLELSENSSPISRVGDPLGLIVMALCRPECGAGTREAGRHLLV
ELGLGGHDSTGNAKVWSAVLCLLDERDVQDPAGAQILGFQVAQELLVRKL
SEQRGRNETLRYRGDNVGSGVLDGALPSPQKNRQRLMRPELTLMPSVLKL
SLSPSYEVREAAAGLAVLLATECPRPCCYLVVAGLAGLFGLVSGVERGAP
IAWIQLQRERVTGRRSREQTGEDAHSADEQSVSSSRGSDHTAESDGYDSR
DGPPASSSEESNRRGAGVGGGEAILALKLLRRVCASGRGGTGEEELCSAL
AYALAPLTVLDLVVCPRNLAADLRPTDNRDAGNAPAGVEADGDAVIERQV
TANREEAGAGGDSDEGSGERPRSERQAEAGGLPLKENGNQLGGGELPSGF
TPFDELLGVYAGGSGDVASRRRFEQPPGEAIQDLKRNLQKDGHLPAPAPP
ATVR

mRNA from alignment at Scaffold_523:336504..339096-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft97_11a-0001 ID=EsuBft97_11a-0001|Name=EsuBft97_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2593bp|location=Sequence derived from alignment at Scaffold_523:336504..339096- (Ectocarpus subulatus male Bft15b)
ATGAGTGCGTCTGCGCGCGGGCTGGCCATACGCCATGCCGTCGATGGCTG
CTGCAAGAACCTGCCGGCGACACCAGGACATGCTCCCGGCGCGACAAGAC
TCCTACAGCAATGGGACCGAGCAACACGACACCAGCGTGATGAGTTGATG
AAAGCGTTGGCCGATCAGCTTCTCATCAGCAACAACGAGACCTCCTGCCC
GCAGCAGCAAGCTTGCTGTTATTCAGGCGCAGACTATGAAAGTGGCATCA
GCTTAGAGAAGGAGGTCAGTGGTGGGCGCATGGAGCAGCAGACGGCAACC
GCCCTCCGTTATCCACTCAGGGGCGAAATAGATGTTGATAAGAATGAAGG
CCGCGGCCTCCCTTCTTCTACAAGACAGGTTGGACTGCCTCCTCCGACTG
AACCAATCGGCGATGGTGTGCCTGGTGAGGCGATTCTACCCCCTCAACAC
CCGTCGCCAAGGGCGAATGTTGAGTTTCTTTCGCTACTCGGCCACCATGC
TGGCTTGCTGGCGACCCGGTTTTCCTCGCACTTGCAGACATCGTTCGCGT
GCGGTCATGAACTTGGCCCCTGTCTTCGTGTGGTCACGCTGCTCGCAGAA
TCCGCCACTGCTGGGAGAACCGTTCAAGGTAGTAGTGACGACGGTGTCCA
AGATTACTTTGACCCACGCCTAGTAGGCCATCAGTTTTGCACCCCGGGAT
TGATCAACACAGCTCTCCAGGTAGCAGTGTCACATCAGATGAGTGCTGTA
ACCAGTCAATTATCGGCGACCGAGGCAGACAGGAGGGTGCGACACCGAAG
ACGACGACAACGCGGAAAAATTACTCCAACGGTTCCTCCACGCGCATTGT
CACCTGAAGAGGAAAAGGACAAGGACGAGGAGAAGGACGAGGACGAGGAG
GAGAAGGACGAGGAGAAGGGGGAAGAGAAGGAGGACAAGGAGAAGAGGGA
GGAGGAGGAGATCGAGGATGAGGATGAGGCGGAGGCGGAGGCGGAGGCGG
AGGAGGAGGAGAAGGAGTTGGAGGAGAAGGAGTTGGAGGAGGAGGACGAA
GAGGAGGAGGATGAAGAGGAGGAGGAGGAGGAGACGAATCGGGCGAAAGC
ACTAGGCCTGCTGGTGGCGCTCGTTCGCGCAGGAGGTAAAAGAGTCAAGG
ACTACATTTTGTACCCTTATCCTTCCCCCTCATCCTTACTAGAGCTGTCC
GAAAATTCTTCACCCATATCGAGAGTTGGTGACCCTCTCGGGCTCATTGT
TATGGCGCTGTGTCGACCAGAGTGCGGAGCCGGTACACGAGAGGCCGGCA
GGCATCTGCTGGTGGAACTAGGCCTGGGCGGCCACGACTCCACCGGGAAT
GCAAAGGTGTGGAGCGCCGTCCTCTGCTTGCTCGATGAGCGAGACGTACA
AGATCCCGCCGGTGCCCAGATTCTCGGTTTCCAGGTTGCCCAAGAGCTAT
TGGTGCGGAAGTTGTCGGAACAACGAGGTCGGAATGAAACCCTTCGATAT
CGTGGTGACAATGTCGGAAGTGGTGTACTTGATGGCGCGCTACCGAGCCC
ACAGAAGAACCGACAACGGCTGATGCGCCCGGAGCTGACACTGATGCCTT
CGGTACTGAAGCTCTCTCTGAGCCCGAGCTACGAAGTCAGAGAGGCCGCC
GCAGGGTTAGCCGTGCTGTTAGCCACGGAATGCCCCCGCCCGTGCTGCTA
CCTCGTGGTCGCGGGCTTGGCCGGGCTTTTCGGCTTGGTTTCTGGGGTGG
AGAGAGGCGCGCCCATCGCCTGGATTCAACTCCAACGCGAGCGCGTGACT
GGCAGGCGGTCACGCGAACAGACAGGGGAGGACGCACACTCTGCCGACGA
ACAGAGTGTTAGCAGCAGCCGAGGGTCAGACCACACGGCGGAGTCTGACG
GTTATGATTCACGGGATGGACCCCCGGCATCATCATCAGAAGAATCTAAC
AGGAGGGGAGCTGGAGTCGGTGGTGGTGAAGCGATATTGGCGCTCAAGCT
GCTCCGGCGGGTTTGTGCGAGCGGACGGGGCGGAACCGGCGAGGAGGAGC
TGTGCTCAGCTCTAGCGTACGCCCTCGCCCCGCTCACCGTCCTTGACCTT
GTAGTCTGCCCCCGAAATCTGGCGGCTGACCTAAGGCCGACCGATAACAG
AGACGCGGGGAATGCGCCAGCGGGTGTCGAGGCGGACGGAGACGCCGTGA
TCGAGAGGCAGGTGACGGCCAACAGAGAAGAAGCAGGCGCTGGGGGCGAC
AGCGACGAAGGGAGTGGCGAGCGCCCTCGGAGTGAGCGGCAGGCGGAAGC
TGGAGGTCTCCCGCTAAAGGAGAACGGCAATCAGCTTGGTGGCGGAGAAC
TGCCATCAGGCTTTACCCCTTTCGACGAACTGCTGGGTGTTTATGCTGGT
GGTAGCGGGGATGTAGCAAGTAGGCGACGCTTCGAGCAGCCGCCGGGAGA
GGTTTGTCTTGCCGTGGCGGATGCGCTGCTAGCGATGTATGCTGCTGCTG
GGGAAATGAACGCAGGCCATCCAAGATCTCAAGCGGAACCTCCAGAAGGA
CGGCCATCTCCCAGCTCCAGCACCGCCCGCGACAGTTCGATAG

Coding sequence (CDS) from alignment at Scaffold_523:336504..339096-

>EsuBft97_11a-0001 ID=EsuBft97_11a-0001|Name=EsuBft97_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2415bp|location=Sequence derived from alignment at Scaffold_523:336504..339096- (Ectocarpus subulatus male Bft15b)
ATGAGTGCGTCTGCGCGCGGGCTGGCCATACGCCATGCCGTCGATGGCTG
CTGCAAGAACCTGCCGGCGACACCAGGACATGCTCCCGGCGCGACAAGAC
TCCTACAGCAATGGGACCGAGCAACACGACACCAGCGTGATGAGTTGATG
AAAGCGTTGGCCGATCAGCTTCTCATCAGCAACAACGAGACCTCCTGCCC
GCAGCAGCAAGCTTGCTGTTATTCAGGCGCAGACTATGAAAGTGGCATCA
GCTTAGAGAAGGAGGTTGGACTGCCTCCTCCGACTGAACCAATCGGCGAT
GGTGTGCCTGGTGAGGCGATTCTACCCCCTCAACACCCGTCGCCAAGGGC
GAATGTTGAGTTTCTTTCGCTACTCGGCCACCATGCTGGCTTGCTGGCGA
CCCGGTTTTCCTCGCACTTGCAGACATCGTTCGCGTGCGGTCATGAACTT
GGCCCCTGTCTTCGTGTGGTCACGCTGCTCGCAGAATCCGCCACTGCTGG
GAGAACCGTTCAAGGTAGTAGTGACGACGGTGTCCAAGATTACTTTGACC
CACGCCTAGTAGGCCATCAGTTTTGCACCCCGGGATTGATCAACACAGCT
CTCCAGGTAGCAGTGTCACATCAGATGAGTGCTGTAACCAGTCAATTATC
GGCGACCGAGGCAGACAGGAGGGTGCGACACCGAAGACGACGACAACGCG
GAAAAATTACTCCAACGGTTCCTCCACGCGCATTGTCACCTGAAGAGGAA
AAGGACAAGGACGAGGAGAAGGACGAGGACGAGGAGGAGAAGGACGAGGA
GAAGGGGGAAGAGAAGGAGGACAAGGAGAAGAGGGAGGAGGAGGAGATCG
AGGATGAGGATGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGAAG
GAGTTGGAGGAGAAGGAGTTGGAGGAGGAGGACGAAGAGGAGGAGGATGA
AGAGGAGGAGGAGGAGGAGACGAATCGGGCGAAAGCACTAGGCCTGCTGG
TGGCGCTCGTTCGCGCAGGAGGTAAAAGAGTCAAGGACTACATTTTGTAC
CCTTATCCTTCCCCCTCATCCTTACTAGAGCTGTCCGAAAATTCTTCACC
CATATCGAGAGTTGGTGACCCTCTCGGGCTCATTGTTATGGCGCTGTGTC
GACCAGAGTGCGGAGCCGGTACACGAGAGGCCGGCAGGCATCTGCTGGTG
GAACTAGGCCTGGGCGGCCACGACTCCACCGGGAATGCAAAGGTGTGGAG
CGCCGTCCTCTGCTTGCTCGATGAGCGAGACGTACAAGATCCCGCCGGTG
CCCAGATTCTCGGTTTCCAGGTTGCCCAAGAGCTATTGGTGCGGAAGTTG
TCGGAACAACGAGGTCGGAATGAAACCCTTCGATATCGTGGTGACAATGT
CGGAAGTGGTGTACTTGATGGCGCGCTACCGAGCCCACAGAAGAACCGAC
AACGGCTGATGCGCCCGGAGCTGACACTGATGCCTTCGGTACTGAAGCTC
TCTCTGAGCCCGAGCTACGAAGTCAGAGAGGCCGCCGCAGGGTTAGCCGT
GCTGTTAGCCACGGAATGCCCCCGCCCGTGCTGCTACCTCGTGGTCGCGG
GCTTGGCCGGGCTTTTCGGCTTGGTTTCTGGGGTGGAGAGAGGCGCGCCC
ATCGCCTGGATTCAACTCCAACGCGAGCGCGTGACTGGCAGGCGGTCACG
CGAACAGACAGGGGAGGACGCACACTCTGCCGACGAACAGAGTGTTAGCA
GCAGCCGAGGGTCAGACCACACGGCGGAGTCTGACGGTTATGATTCACGG
GATGGACCCCCGGCATCATCATCAGAAGAATCTAACAGGAGGGGAGCTGG
AGTCGGTGGTGGTGAAGCGATATTGGCGCTCAAGCTGCTCCGGCGGGTTT
GTGCGAGCGGACGGGGCGGAACCGGCGAGGAGGAGCTGTGCTCAGCTCTA
GCGTACGCCCTCGCCCCGCTCACCGTCCTTGACCTTGTAGTCTGCCCCCG
AAATCTGGCGGCTGACCTAAGGCCGACCGATAACAGAGACGCGGGGAATG
CGCCAGCGGGTGTCGAGGCGGACGGAGACGCCGTGATCGAGAGGCAGGTG
ACGGCCAACAGAGAAGAAGCAGGCGCTGGGGGCGACAGCGACGAAGGGAG
TGGCGAGCGCCCTCGGAGTGAGCGGCAGGCGGAAGCTGGAGGTCTCCCGC
TAAAGGAGAACGGCAATCAGCTTGGTGGCGGAGAACTGCCATCAGGCTTT
ACCCCTTTCGACGAACTGCTGGGTGTTTATGCTGGTGGTAGCGGGGATGT
AGCAAGTAGGCGACGCTTCGAGCAGCCGCCGGGAGAGGCCATCCAAGATC
TCAAGCGGAACCTCCAGAAGGACGGCCATCTCCCAGCTCCAGCACCGCCC
GCGACAGTTCGATAG