EsuBft1063_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1063_8a-0001
Unique NameEsuBft1063_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:192066..196461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1063_8
Protein domainsIPR008395
Protein domainsSSF47473
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length126
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_8aEsuBft1063_8aEctocarpus subulatus male Bft15bgeneScaffold_523 192066..196461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_8a-0001EsuBft1063_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 192066..196461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_8a-0001-exonagat-exon-11518Ectocarpus subulatus male Bft15bexonScaffold_523 192066..192180 +
EsuBft1063_8a-0001-exonEsuBft1063_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 192641..193209 +
EsuBft1063_8a-0001-exonagat-exon-11519Ectocarpus subulatus male Bft15bexonScaffold_523 193525..193642 +
EsuBft1063_8a-0001-exonagat-exon-11517Ectocarpus subulatus male Bft15bexonScaffold_523 194079..194170 +
EsuBft1063_8a-0001-exonagat-exon-11520Ectocarpus subulatus male Bft15bexonScaffold_523 194830..194985 +
EsuBft1063_8a-0001-exonagat-exon-11521Ectocarpus subulatus male Bft15bexonScaffold_523 196246..196461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_8a-0001-cdsEsuBft1063_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 192066..192180 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1063_8a-0001 ID=EsuBft1063_8a-0001|Name=EsuBft1063_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1266bp|location=Sequence derived from alignment at Scaffold_523:192066..196461+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATCCCGATCGGACGACTCGCCTGCGTCGGAGGGAGGCTCGCCTTT
CGACGGCTGGGGGGCGGGGAAGAACCGTCGGGGCACAGGGAGAACAGACT
CCATCTTTACTCAAGGCCGTAACGACCCAGGAGTTGAAGCGGCTGTACAA
GAGAAACTTGCGACTCTCATCTCTAGACGAGGCCCTGAGCTGGAAGCCCT
GCTGCTCTTGCGGGACCCAGAACGTTCCGGGAGCATCTCGGTGAAGACAT
TCTCGGAATGCCTACGGGCGTGGGTTTCGAGCGACAGCGAACATGGCGGT
GGTGGCACCGGCACACGGGGGGGCAAGCGTGAAGGACCAAGCCAGGCGGC
AGAGTTAACTCATGCCGACCGCAAGGTTTTGTACAGGCGGTGGGCGGTGC
GTGGACAGGTGAGGTACGTCGATTTCCTGGGCGCGAGCGGGTGTTTCAAC
GCCCCGCTGCCCCGCTACTCCGAGATCAGCACGGCTGTCGCTGCCGCACC
CGCTGCGCCTGCCGCTCCGGTGGTCGCCGACAAACCTGCACGGCACCCTG
TCACCGGGAAAAGGGCTTCCGGAAGGCTACCGTCCGGGGACAAAGCGGGC
ATGCATGCGAGGAACGCTGATGCGGGGGAAGAGGAGACGGATCTCTTCGC
AAGGGCGAGGGTCGTACTCGTGCATCTATCGGAGGTGTTGCGAGACGAGG
GGGAGGAAGCGTACTTTGCCGCATTTGAGGCGCAGGACTACGGCAACTAC
CGGTGTCTAGATGAGGACGGCTTCGTCAATGCCATCGAAACCCTCGCTCC
AGAGGTGACGGCGGAGCAAGTGCACGACGTTTTCCTCGTGAGATCACGGA
TAGAAGGAAGCGATGACAAGGCTAACTACGACGAGCTCTTCAAGCTTGGT
TGCGCTTTCCCATACCCCTCACCACGGCCGTCCATTACCGCCCGCAAGGA
CTTGCGAAAGCTGGCTCAGATCGGAGGTTTCCAGTCGGGGGATGCTGTGG
AACTCAGAGTTGAATCGCGGGGGGGTCGCGTGGACTGGGTCCCTGCCCAG
GTGGTGTCAAGAGACGGGGATGGCACCTTCACCGTTCGATTCAGGTCTCC
GACAAAGGTCCCAGGCGCAACAGGTGCCCGTATGAAGGAATCCGGTGTGT
CCGAGTCCGACATGAGAGAGGTACGTGAGAATAATGGGGGTGATACGCAC
GCCGAGTCGCTGTCCATCCGTAGAATTACCTATGACGTTGAACCCTATCC
AGGAACGTGCGATTGA
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protein sequence of EsuBft1063_8a-0001

>EsuBft1063_8 ID=EsuBft1063_8|Name=EsuBft1063_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MLSRSDDSPASEGGSPFDGWGAGKNRRGTGRTDSIFTQGRNDPGVEAAVQ
EKLATLISRRGPELEALLLLRDPERSGSISVKTFSECLRAWVSSDSEHGG
GGTGTRGGKREGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGCFN
APLPRYSEISTAVAAAPAAPAAPVVADKPARHPVTGKRASGRLPSGDKAG
MHARNADAGEEETDLFARARVVLVHLSEVLRDEGEEAYFAAFEAQDYGNY
RCLDEDGFVNAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKLG
CAFPYPSPRPSITARKDLRKLAQIGGFQSGDAVELRVESRGGRVDWVPAQ
VVSRDGDGTFTVRFRSPTKVPGATGARMKESGVSESDMREVRENNGGDTH
AESLSIRRITYDVEPYPGTCD
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mRNA from alignment at Scaffold_523:192066..196461+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1063_8a-0001 ID=EsuBft1063_8a-0001|Name=EsuBft1063_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4396bp|location=Sequence derived from alignment at Scaffold_523:192066..196461+ (Ectocarpus subulatus male Bft15b)
ATGCTATCCCGATCGGACGACTCGCCTGCGTCGGAGGGAGGCTCGCCTTT
CGACGGCTGGGGGGCGGGGAAGAACCGTCGGGGCACAGGGAGAACAGACT
CCATCTTTACTCAAGGTACCCAAATCTCGATTGCTCAGCCTTCCACTAGA
AACGGAGTTGTGTGCTCAATTGCTTGCTCAATAAAGAAAGTTCATGAACA
ACGGGATTCGCCAACCAACCTGGTACGGAAAACGACTACCGGAATACCTC
AGTGTGGGAAAATGACAGAAATGTGGTTTGGGCCCCAATGTTTGGTTAGC
GCAACGTGGCTGTTACCATCATCCGTAGGCATGGTGTGCTACATTGGATT
GGGCCCAATGAATGGCTATGGGTGTGGCTAGACTAAAAGTCGACGTTGAC
ACCGTGTGGGTCTCTATGCCTGGATCATTAGCTTGCGGAGAAAATATTTT
GACGAGAACCGAAAATCGTACCAATTGCAACACAAACAGGAAACTCTTGG
TGGCCAACAAAGGCCAACCACCCTTACCCCTGAAGCCCGCAATCCCCCAT
GCCTTCGACAACGACCGTTCCATAGGCCGTAACGACCCAGGAGTTGAAGC
GGCTGTACAAGAGAAACTTGCGACTCTCATCTCTAGACGAGGCCCTGAGC
TGGAAGCCCTGCTGCTCTTGCGGGACCCAGAACGTTCCGGGAGCATCTCG
GTGAAGACATTCTCGGAATGCCTACGGGCGTGGGTTTCGAGCGACAGCGA
ACATGGCGGTGGTGGCACCGGCACACGGGGGGGCAAGCGTGAAGGACCAA
GCCAGGCGGCAGAGTTAACTCATGCCGACCGCAAGGTTTTGTACAGGCGG
TGGGCGGTGCGTGGACAGGTGAGGTACGTCGATTTCCTGGGCGCGAGCGG
GTGTTTCAACGCCCCGCTGCCCCGCTACTCCGAGATCAGCACGGCTGTCG
CTGCCGCACCCGCTGCGCCTGCCGCTCCGGTGGTCGCCGACAAACCTGCA
CGGCACCCTGTCACCGGGAAAAGGGCTTCCGGAAGGCTACCGTCCGGGGA
CAAAGCGGGCATGCATGCGAGGAACGCTGATGCGGGGGAAGAGGAGACGG
ATCTCTTCGCAAGGGCGAGGGTCGTACTCGTGCATCTATCGGAGGTTTGA
TATTTGCGCGTGCTTGGTTCAATAGGGGGACCACCAGGACTTGGGTAGAT
GACCATTTTTGCCGTAGCCAATATTGTTGATGATCTCGGTACACCGCCCA
AAGCAGCAACAGCAGCAACACCAACAGCAGCGAAACCAACGGGATTTCTT
GCGTGTTTCTTATCCTAACCTGTTTCTCAAGTTGGCCTAGACGGTATCGG
ACACAGGTCGAACCGGTTATGCAATATATACAGCAACCACAAGCTGTAGG
TAAGAATGAATCGATGTCATGCGGTTTCAATGGACCGGCGCGTGTGGAAC
ATGCCGCAGGTGTTGCGAGACGAGGGGGAGGAAGCGTACTTTGCCGCATT
TGAGGCGCAGGACTACGGCAACTACCGGTGTCTAGATGAGGACGGCTTCG
TCAATGCCATCGAAACCCTCGCTCCAGGTAAACATTGACCGTCGATCTCC
ATGGCGCAGCAGTAGGCACTCTTTCCCTGCCGGCTTCCAGCGTTGTGCCG
TTGGAGGCGGCAGGTTGCCTGTGTATTGTTCGCAGATATTCTGTTGCCGT
ATCTGCGTCGCGGTGAGGGGTAAAATATTGCATTCTTGTCGAGAGGAGAG
CACCCGCACTGCTCCACACATCACGAGTCTGAGTACGAACATCTCGAAGA
AAGTCTACTTCGATCGTTCCCATCATTTTCCTCCCGGCGGAGACTGGGCG
TAAACTAGCAGTGGACTGATTCTAGGACATCTCCATGCCCTAATTCACCG
CCCGTCAGACCCCTCTTTTGACATTTTTTTCTCCGATCCCCGTGGTGTGA
TGAACTCAATTGCTGTCAATGCCGCGAAATCGAAAATTGGGCGCGGCTTT
CGCGTACGCGTAGAGGTGACGGCGGAGCAAGTGCACGACGTTTTCCTCGT
GAGATCACGGATAGAAGGAAGCGATGACAAGGCTAACTACGACGAGCTCT
TCAAGGTACGTAGATAGAAGAAGGAACCGAAACAAGAAGGAGGGTGAGGG
TACGCTTGGCCTCTGGTCTAAGGGTAGACACTGTGAGGGTGAAGGTACGC
TTGGACTCTAAGGGTACAAAAATGACGTTCCTGCCCTGGTCGGGAGAGCC
GTCCAGCCACAAAGGATTTTCCACACCGAAAGCAGGAATGGTAGACTAAA
CATCGAGGGGTAGCCGATGAAATAACCAAGAGAAACGAGGACTCGCTTGT
GAGCATGTACGGCGAGGATTAAAGACCCAAGCACGTAGGTCAAGGATGGA
TACAACCACGTGGAGAGTAAACGCGAAAGGGAGAAGATTCGAACGGCACT
GGGGCAGGGACTCACACAAGCACACAAGCGGATAACGATAGAAGAATAAG
GTTGAGCGCTCGATCTTACGGGACTGGCGTAAGAAGGGGCTCTCCGAGAT
GCGTAAATGGTGGCAGAGGCACGCTCGTCCTTGTTGGTGCGGGGAACAGC
AACTTGTGAGAACAACCCCTTCGGGAGGGTGCAAGTCATGCCTTTTCTAT
CTCCTGCCACAGGCGGCATCGTGACTACGGCTCGCCAAAACATCATTCAA
ATGTACGCTTACAACGCTCCCATCCACAACACTGTGCACCATTCGCCGAC
TCCTCACAAGATAGCTTGGTTGCGCTTTCCCATACCCCTCACCACGGCCG
TCCATTACCGCCCGCAAGGACTTGCGAAAGCTGGCTCAGATCGGAGGTTT
CCAGTCGGGGGATGCTGTGGAACTCAGAGTTGAATCGCGGGGGGGTCGCG
TGGACTGGGTCCCTGCCCAGGTGAAGAGGGGTCGATTCAGCCCTATCGTT
AATCCTTGCTACGGGACTCTATCCAACCGTGTGCTCTCAAACACCGACAA
GCCAAGCCAGGCCATTTCGAAGAGAGCCATCATCAGATATAGCAGAGAGA
AGAGAACGGAAAAACATCATCACTCGGAAGCAGTGATAATAGGAAACACT
ACAAACAGGCGGTCGATAGTCTTGTTGTTGGCGTCGCCCCTCTTCCGAGC
TAAAAACCTTTTACGCTCACCCCCGCGAGTGCTGTGGCCGTCACACACCA
TCCCTCACTGCTACGTGGGTATTGGTGTTTCAGAGCGGAATAGGCACCAC
TGGCACGTACCACTAGGACAGATGACGCTAGATGCTCGCCGTGCGAGCGA
CCGAAAGTTCGTGCGGGCAGCGCAGCCGGGCTCTCTGCTCCTTCTGCTTC
AAGTGGATGTGATTGTTCTCACCTCAGACGTAGAAACCGTTTCAGCCTCT
TTCACTCATCGCGTGTTCCTCCCGCACGGCTTTCAGAACTGGAACTACAC
TGCCTCTGGTCATTGGATTTCCGACAATCTCTGGACTCGACTATGAGGCA
GCTTGTTGTTTCATGGAAGGCAATCGTTGGGCACCCACTCTCTAATGCTG
GTCGCTTTTGGCCCCCTCACGATAGGGGCCCATCGCCAAACCGTGGGTTG
ACAGAACCGAATAATCAAGGCCATTCCCCTTGGTCAGTACCCTATTGAAT
TTGTGATTTCCGGATTGCTAGATCCGACGTGCGGAGGAGCCGAAGTGATA
CCTTCAACATCCTCGAAATCGCCCTAAAAGTGTTGAGTGGGAGGCTTTGC
AGAGCGAGATACATCGGGAGACAGGTGTCCATTCAGAGAATGGTTTTCAA
ACCGTTCGAAGCGCGTGTCTAGCGCGTCGAAGCAGCGACCGTGATTTTTT
TTTTTCCGCCCCTCACAGGAAACTCCTCAAGAAGAATCGAATTCACGACC
ACGGGATCACCACACCAGCGGCACATGCCTACCTCAGTCGCACCTCCATT
CCATTACCCTCCCAGTTTTCCCTTGGCTCTGGCTTAAGTGAAAAGCTCTT
ATCGATACTGAATATTCTACAGGTTGGACGAAATCCACATCGAAACACCA
CTATCGAAGTGCTTTATCCTACCGTGACAAGAGCCGGTTTTTAATGGAAG
ACGAAAGGCGTTGAGTGTTGCATAGCACTGACATCGAACCGCCTCACTCG
TGCGTGTTTGGCGGGCACGTTTCACACCAGGTGGTGTCAAGAGACGGGGA
TGGCACCTTCACCGTTCGATTCAGGTCTCCGACAAAGGTCCCAGGCGCAA
CAGGTGCCCGTATGAAGGAATCCGGTGTGTCCGAGTCCGACATGAGAGAG
GTACGTGAGAATAATGGGGGTGATACGCACGCCGAGTCGCTGTCCATCCG
TAGAATTACCTATGACGTTGAACCCTATCCAGGAACGTGCGATTGA
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Coding sequence (CDS) from alignment at Scaffold_523:192066..196461+

>EsuBft1063_8a-0001 ID=EsuBft1063_8a-0001|Name=EsuBft1063_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_523:192066..196461+ (Ectocarpus subulatus male Bft15b)
ATGCTATCCCGATCGGACGACTCGCCTGCGTCGGAGGGAGGCTCGCCTTT
CGACGGCTGGGGGGCGGGGAAGAACCGTCGGGGCACAGGGAGAACAGACT
CCATCTTTACTCAAGGCCGTAACGACCCAGGAGTTGAAGCGGCTGTACAA
GAGAAACTTGCGACTCTCATCTCTAGACGAGGCCCTGAGCTGGAAGCCCT
GCTGCTCTTGCGGGACCCAGAACGTTCCGGGAGCATCTCGGTGAAGACAT
TCTCGGAATGCCTACGGGCGTGGGTTTCGAGCGACAGCGAACATGGCGGT
GGTGGCACCGGCACACGGGGGGGCAAGCGTGAAGGACCAAGCCAGGCGGC
AGAGTTAACTCATGCCGACCGCAAGGTTTTGTACAGGCGGTGGGCGGTGC
GTGGACAGGTGAGGTACGTCGATTTCCTGGGCGCGAGCGGGTGTTTCAAC
GCCCCGCTGCCCCGCTACTCCGAGATCAGCACGGCTGTCGCTGCCGCACC
CGCTGCGCCTGCCGCTCCGGTGGTCGCCGACAAACCTGCACGGCACCCTG
TCACCGGGAAAAGGGCTTCCGGAAGGCTACCGTCCGGGGACAAAGCGGGC
ATGCATGCGAGGAACGCTGATGCGGGGGAAGAGGAGACGGATCTCTTCGC
AAGGGCGAGGGTCGTACTCGTGCATCTATCGGAGGTGTTGCGAGACGAGG
GGGAGGAAGCGTACTTTGCCGCATTTGAGGCGCAGGACTACGGCAACTAC
CGGTGTCTAGATGAGGACGGCTTCGTCAATGCCATCGAAACCCTCGCTCC
AGAGGTGACGGCGGAGCAAGTGCACGACGTTTTCCTCGTGAGATCACGGA
TAGAAGGAAGCGATGACAAGGCTAACTACGACGAGCTCTTCAAGCTTGGT
TGCGCTTTCCCATACCCCTCACCACGGCCGTCCATTACCGCCCGCAAGGA
CTTGCGAAAGCTGGCTCAGATCGGAGGTTTCCAGTCGGGGGATGCTGTGG
AACTCAGAGTTGAATCGCGGGGGGGTCGCGTGGACTGGGTCCCTGCCCAG
GTGGTGTCAAGAGACGGGGATGGCACCTTCACCGTTCGATTCAGGTCTCC
GACAAAGGTCCCAGGCGCAACAGGTGCCCGTATGAAGGAATCCGGTGTGT
CCGAGTCCGACATGAGAGAGGTACGTGAGAATAATGGGGGTGATACGCAC
GCCGAGTCGCTGTCCATCCGTAGAATTACCTATGACGTTGAACCCTATCC
AGGAACGTGCGATTGA
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