EsuBft1063_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1063_7a-0001
Unique NameEsuBft1063_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:187916..190739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1063_7
Protein domainsIPR011992
Protein domainsCoil
Protein domainsSSF47473
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Length72
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_7aEsuBft1063_7aEctocarpus subulatus male Bft15bgeneScaffold_523 187916..190739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_7a-0001EsuBft1063_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 187916..190739 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_7a-0001-exonagat-exon-11513Ectocarpus subulatus male Bft15bexonScaffold_523 187916..187999 +
EsuBft1063_7a-0001-exonEsuBft1063_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 188539..188676 +
EsuBft1063_7a-0001-exonagat-exon-11515Ectocarpus subulatus male Bft15bexonScaffold_523 188837..188935 +
EsuBft1063_7a-0001-exonagat-exon-11514Ectocarpus subulatus male Bft15bexonScaffold_523 189222..189410 +
EsuBft1063_7a-0001-exonagat-exon-11511Ectocarpus subulatus male Bft15bexonScaffold_523 189884..189985 +
EsuBft1063_7a-0001-exonagat-exon-11512Ectocarpus subulatus male Bft15bexonScaffold_523 190439..190526 +
EsuBft1063_7a-0001-exonagat-exon-11516Ectocarpus subulatus male Bft15bexonScaffold_523 190717..190739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_7a-0001-cdsEsuBft1063_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 187916..187999 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1063_7a-0001 ID=EsuBft1063_7a-0001|Name=EsuBft1063_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=723bp|location=Sequence derived from alignment at Scaffold_523:187916..190739+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAAGAGATCACGGCCCTCAAAGCCCACATCGTCTCGATGGAAAA
AGAGCAGTCATACGTGGTCAACGCGGCGGTCAAGAAAACCGCTGAGCAGC
TGGTGCTAGAGCGGGAAAGGGCTGTGGAGGAAGAGAGAGCAAGGGCGGAC
CAGCTGGAAGAGCAGAGAAGCGTCGCACAGCTTCAGAACGAGCTGTTGAC
AGAAATGGTGGCTGCAGAGCAGGTGAACGTAAAGCTTCAGGAGAGGCGGA
ACGAAGCTCTCAAGTGGGAGCTGCTTAGGCAAGGCGGGTGCCAGGAAACG
TTCGACAGCATTGCCAAAGAGGTTCCGGTTCTCGGGGACACCCTGAGGGC
CGACACGGCCGATGTTTTGCACGGAGTAGCGAAGCATGACATGGCAGAAG
CCATCGAGCACGTCGTGTGCCGAATTGGCGAGGTCAAAGACGGCCTGCAG
GAAGCCTTTGTTGCCAGAGACACCGGCCGCACAGGGGCGTTGGGCGGGGC
AGCTTTCAAGGACGCTTTGAAAGAAAGCTTTCCCGACATGCCGCGCGAGG
ACAGGCAGCTCCTCATGCTGCGTTTCGTTCGGGAAGTAGACCAGAGCGTC
GACTACGGAGAGTTCCTTGAGTTCTGCCGCCACAAGGCGCAGTCAAGAGA
GCGTCTAAAAATGGGCCTAACCGGCGCTCTAGCGGCAACGCGTTCTGCAG
GGATCGCTGGCATATTGCCTTGA
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protein sequence of EsuBft1063_7a-0001

>EsuBft1063_7 ID=EsuBft1063_7|Name=EsuBft1063_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=240bp
MKEEITALKAHIVSMEKEQSYVVNAAVKKTAEQLVLERERAVEEERARAD
QLEEQRSVAQLQNELLTEMVAAEQVNVKLQERRNEALKWELLRQGGCQET
FDSIAKEVPVLGDTLRADTADVLHGVAKHDMAEAIEHVVCRIGEVKDGLQ
EAFVARDTGRTGALGGAAFKDALKESFPDMPREDRQLLMLRFVREVDQSV
DYGEFLEFCRHKAQSRERLKMGLTGALAATRSAGIAGILP
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mRNA from alignment at Scaffold_523:187916..190739+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1063_7a-0001 ID=EsuBft1063_7a-0001|Name=EsuBft1063_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2824bp|location=Sequence derived from alignment at Scaffold_523:187916..190739+ (Ectocarpus subulatus male Bft15b)
ATGAAGGAAGAGATCACGGCCCTCAAAGCCCACATCGTCTCGATGGAAAA
AGAGCAGTCATACGTGGTCAACGCGGCGGTCAAGGTGAGGCGCCCAAATT
CGACGCTTCTGCATTCTTGAGTGAGGTTCTGTCCTTCGCATGGCATGTGG
GGTTGCGTGTCTTCCCCTACCATACATTCCGAACTTTCGTATTGTGCGAC
TGGTGCTCTGCTAGTCCGGTGAGTTTCTCTGCCAGATACATGCGTCCCGC
CCGCGAAGACCGCACATTCAGTTGCAACGCATGTGCGGCTGCGGTGCAAA
GCGTTGATGGTTACCTGCTTGTGGGCGCTAGCACCAAGCGTTTGACCCCT
TACTCGCATTTGATTCATGCCAAGTATGACCCAGGAGGGCTCTACACTTT
TCGATGGGCGATCTACCGTAGTCCCAGCCCACGATTGGCCGCGCACTGCT
CCTCCCCAAATTGAAACTAAGAGATTTTTGTTTTTTACTTCGTATCATTT
GTGTCCATAGCGCATGAAACGTCCGGAGGTTCACTAATCCAACCGTGCTA
ACAGGGGTGTATATGGGACGCGTCGTAACGCCCTGCACATTGCTGTCATC
GGGGGTTACTGATGCTCCTGTAGAAAACCGCTGAGCAGCTGGTGCTAGAG
CGGGAAAGGGCTGTGGAGGAAGAGAGAGCAAGGGCGGACCAGCTGGAAGA
GCAGAGAAGCGTCGCACAGCTTCAGAACGAGCTGTTGACAGAAATGGTGG
CTGCAGAGCAGGTGCTCCATCCATGGCCGTTGTTGTATTTTCAAGGACGA
CTAGTATAGAAACAACGTCTCAGGATTCAACTCCTGCTTTCGGGGCAGTT
GAGCTCATCGAACTTGTACCAATGCAGCCTACAAATCTGTAAACTACGCG
CTTTGCATGTCTACATTACAGGTGAACGTAAAGCTTCAGGAGAGGCGGAA
CGAAGCTCTCAAGTGGGAGCTGCTTAGGCAAGGCGGGTGCCAGGAAACGT
TCGACAGCATTGCCAAAGAGGTCGGTAGCGAGGAGTGTCTAGTGATGTCG
GCACCTTCGCCAGCTTACAATGCGAAGCAACCTTGCAAGACATGAATTCC
AAGAGCGTGTTAGGGCGTGGAGATGCTGGTTTATTGCATAGTGCATGTAA
GGAAACGTGCTCGACGTCTTCCCATTTTTGCACAATCCCAGATCTGCGAC
GATTGGCCGGCGCCCGAAAACGCCAGAATTGTTCCTACAGCATGATTAAC
GAGGAGCACCACCGCGGACATTGACATGTGGTGTTCTGGGGGTACTACCG
ACGCAGGTTCCGGTTCTCGGGGACACCCTGAGGGCCGACACGGCCGATGT
TTTGCACGGAGTAGCGAAGCATGACATGGCAGAAGCCATCGAGCACGTCG
TGTGCCGAATTGGCGAGGTCAAAGACGGCCTGCAGGAAGCCTTTGTTGCC
AGAGACACCGGCCGCACAGGGGCGTTGGGCGGGGCAGCTTTCAAGGTATG
AACGAACTCCCGTGCAAGCTGCCGCTGTGTCGCTTGTCAGGAACTGGCGG
GAATGTGACTGATGTCGCGGGGGATTGACGGTGGCAGGAGTTGGCCCTGA
ACGCGCTACCATACCCACAAATTCAACCAAGCGTTTCCTCGTTGTGGGTT
CACCAAGAGGACGTTTTTTTCGATGTCCCCCCGAAAACTCACTCTTGTGG
TCGGTCGGCGAACTACACTAGAGACCACAGAGTTCTTCCTTACTCATCGT
GTTGAAACAACCACACGACCTTCATCCTAGGCAAACAATAAAAGTGCAGA
GAATGCAGTGAGGGTTGCGCATAGGCCGCCTGCGCCTGCAAACGACGAGC
GTGCACCGGTCTGACCACGCGAGCGCGTGACACCTGTCGTCGACCCTGTC
CTCGTTGTTACCGTTCGTCCTTTGCCCTGCCACGGCAACCGCCACCGCTA
CCATATCGCAACGAACAGGACGCTTTGAAAGAAAGCTTTCCCGACATGCC
GCGCGAGGACAGGCAGCTCCTCATGCTGCGTTTCGTTCGGGAAGTAGACC
AGAGCGTCGACTACGGAGAGGTGGGTAGCAGCCCTTTTGATTCTTGTGCA
AGGTTGCTTGTTGATTTGTACACAGTTTGAGGACTAAGTATCGTGAGTGC
TTGCCTTTGCCCGAAGCTTTGCCACGAGAGTTCTTGAGTATGCTGGGGCA
GGCGAGGCGCTCTCTAGGACAACGGCCAAAGCGCCATCTATTGTGGCAAG
GTGTAGAAATGTCGTCACCCGCTTGAACGGATATGAGAACGCTGGCAATG
GTCGGAATACTTTTAGCGACCCCTCACGCGGTTAGAGAGACTTTTTATTG
CCGTATCCAAAAGGGTCGTTAGCTCGATTGACTGGACTCGTTCAATAGCT
CAACGAAGTTCGTGCCGAATGCGACATTCAGACGTGGTGCGTCCCGACGG
TTTCCTTGGCCAACCCCTTGTGCTGTCCGCCCCGATACCAACGCCTTGCT
CCCCAACATCCAACCCAAAATAGTTCCTTGAGTTCTGCCGCCACAAGGCG
CAGTCAAGAGAGCGTCTAAAAATGGGCCTAACCGGCGCTCTAGCGGCAAC
GCGTTCTGCAGGTGACGAGACACGTGAAATCTACACATCGCCGTACACAT
GCATGCACGCACACACACGTACACACACCTGCACATGGAGAGAATATACT
TGTTGATGTCGTGCTCATCATGCCCAGCATGATATTGTTCCCTGCTCAAT
CTAAGCATCCTCGCCAACGGCGTTCCGCTTCGTCGGACATCCAGACCACA
GGGATCGCTGGCATATTGCCTTGA
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Coding sequence (CDS) from alignment at Scaffold_523:187916..190739+

>EsuBft1063_7a-0001 ID=EsuBft1063_7a-0001|Name=EsuBft1063_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_523:187916..190739+ (Ectocarpus subulatus male Bft15b)
ATGAAGGAAGAGATCACGGCCCTCAAAGCCCACATCGTCTCGATGGAAAA
AGAGCAGTCATACGTGGTCAACGCGGCGGTCAAGAAAACCGCTGAGCAGC
TGGTGCTAGAGCGGGAAAGGGCTGTGGAGGAAGAGAGAGCAAGGGCGGAC
CAGCTGGAAGAGCAGAGAAGCGTCGCACAGCTTCAGAACGAGCTGTTGAC
AGAAATGGTGGCTGCAGAGCAGGTGAACGTAAAGCTTCAGGAGAGGCGGA
ACGAAGCTCTCAAGTGGGAGCTGCTTAGGCAAGGCGGGTGCCAGGAAACG
TTCGACAGCATTGCCAAAGAGGTTCCGGTTCTCGGGGACACCCTGAGGGC
CGACACGGCCGATGTTTTGCACGGAGTAGCGAAGCATGACATGGCAGAAG
CCATCGAGCACGTCGTGTGCCGAATTGGCGAGGTCAAAGACGGCCTGCAG
GAAGCCTTTGTTGCCAGAGACACCGGCCGCACAGGGGCGTTGGGCGGGGC
AGCTTTCAAGGACGCTTTGAAAGAAAGCTTTCCCGACATGCCGCGCGAGG
ACAGGCAGCTCCTCATGCTGCGTTTCGTTCGGGAAGTAGACCAGAGCGTC
GACTACGGAGAGTTCCTTGAGTTCTGCCGCCACAAGGCGCAGTCAAGAGA
GCGTCTAAAAATGGGCCTAACCGGCGCTCTAGCGGCAACGCGTTCTGCAG
GGATCGCTGGCATATTGCCTTGA
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