Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7425.NV18849-PA |
| ProteomeId | EsuBft1007_4 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 1545 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 9.04e-41 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0043170 |
| GO | 0003824 |
| GO | 0044238 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1007_4a-0001 ID=EsuBft1007_4a-0001|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1545bp|location=Sequence derived from alignment at Scaffold_519:193188..195287+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGCTGTTGAGGATTTCGCAGCAGAGGTTTGCCGAAGAGTTGGCTGCAGAG
TACGGAATTGAGTGGGGGAGGAGTGTGCCCTTGCCTGTGAGCGTGAAGCT
CACCGAAATTTGACGAGAACGAAGCGTGTGCTGACGTCCCGTTTCGCGAG
TTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACCAGGCCGGACATCGC
GAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGC
ACTGGAAGGCAGCACTTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGG
ATGGGGATTACATTTGAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGT
GTTTGTGGATGCCGACTATGCAAGCAAGGCAGCAGACCGTAGGTCGGTCT
CAGGAGGACTAGTGATGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGG
ACGCAGAAGTGCGTCACGCTCTCCACAACGGAAGCAGAGTATGTGGCAAT
TGCCGACGTCTTGAAGGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTA
TGTTGCCAGATGCAGGTATGCCGTGCATTCCGGTCTTCGAGGATAATCAG
GGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCAAACTCGAAGCA
CATCGATGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGA
TTTCGATTACGCATGTGACGCCGGAGTTTCAGCATGCAGATTTCTTGACG
AAGGCTATCAGCAAGGAATCTTTTGCGTTGCACAGAGACTTTGTGATGAA
TTTGCAGTGAAAGAAGTGTTTTCGGATCAAATCGTGTTTTTCCGCGGAGT
GGAAGAGAGAGGATATGTACGGGCTTGAACAAGAGATGGAGAGAGGCAAG
TGGAGATGGTAGTGCTTTGGAGAGTTAGTGTTAGGGATTTTTCTTGTTGA
TTTGGGAGAGTTGGTATGCGATTGATTATTTTCGGACGTATTGTATTGGT
GTTGGGATTTTGTATTTTCGTTTTCTTGGTTTTGTGTTTTGGGATGAACT
GGTATGAAAAGGATGACTTTGATATTTTCCCGGAGCATGACGATGCATAC
GAGCAGGGGGGATATTCGATATACTCGTAGCATAGTATGATGGTTGAGAT
GTTATGTACGTACGTACGAATATTGCAGTGATGAGATGCGGAGGAACAGG
AACTTTCTACATATTTTCCTTGGTTGTGAGAGGCTTTTGGTGAGGATTCA
GAGAGATTCGTTGTGTGAGAAAGCATGAAGGCGTGACTCGATACCGTGAT
GGTTTGACGAGCACGAGCACGCCCCCGATTAATACAACACTACAACACGA
CAAAACGGATACAACACGTTTCCCAACACGTCCCTACCCTACCACGGCCC
GTCATGGCCCAGCTGCTCTACACTCCCAACACAAAGAACTGAGCCACCGA
ATTATCGATCAACGTCTGCACTATACCCCCAGAAACATATCCGCTGGTTG
GAGAAAGGGTAACACATGGAGTCTGGCGTGACCGCCGATGGCGGT back to topprotein sequence of EsuBft1007_4a-0001 >EsuBft1007_4 ID=EsuBft1007_4|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=214bp
MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITF
ERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCV
TLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQI
AHNPITNSNSKHIDVRHHFIRELVERKEISITHVTPEFQHADFLTKAISK
ESFALHRDFVMNLQ back to topmRNA from alignment at Scaffold_519:193188..195287+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1007_4a-0001 ID=EsuBft1007_4a-0001|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2100bp|location=Sequence derived from alignment at Scaffold_519:193188..195287+ (Ectocarpus subulatus male Bft15b)
GGCTGTTGAGGATTTCGCAGCAGAGGTTTGCCGAAGAGTTGGCTGCAGAG
TACGGAATTGAGTGGGGGAGGAGTGTGCCCTTGCCTGTGAGCGTGAAGCT
CACCGAAATTTGACGAGAACGAAGCGTGTGCTGACGTCCCGTTTCGCGAG
TTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACCAGGCCGGACATCGC
GAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGC
ACTGGAAGGCAGCACTTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGG
ATGGGGATTACATTTGAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGT
GTTTGTGGATGCCGACTATGCAAGCAAGGCAGCAGACCGTAGGTCGGTCT
CAGGAGGACTAGTGATGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGG
ACGCAGAAGTGCGTCACGCTCTCCACAACGGAAGCAGAGTATGTGGCAAT
TGCCGACGTCTTGAAGGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTA
TGTTGCCAGATGCAGGTATGCCGTGCATTCCGGTCTTCGAGGATAATCAG
GGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCAAACTCGAAGCA
CATCGATGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGA
TTTCGATTACGCATGTGACGCCGGAGTTTCAGCATGCAGATTTCTTGACG
AAGGCTATCAGCAAGGAATCTTTTGCGTTGCACAGAGACTTTGTGATGAA
TTTGCAGTGAAAGAAGTGTTTTCGGATCAAATCGTGTTTTTCCGCGGAGT
GGAAGAGAGAGGATATGTACGGGCTTGAACAAGAGATGGAGAGAGGCAAG
TGGAGATGGTAGTGCTTTGGAGAGTTAGTGTTAGGGATTTTTCTTGTTGA
TTTGGGAGAGTTGGTATGCGATTGATTATTTTCGGACGTATTGTATTGGT
GTTGGGATTTTGTATTTTCGTTTTCTTGGTTTTGTGTTTTGGGATGAACT
GGTATGAAAAGGATGACTTTGATATTTTCCCGGAGCATGACGATGCATAC
GAGCAGGGGGGATATTCGATATACTCGTAGCATAGTATGATGGTTGAGAT
GTTATGTACGTACGTACGAATATTGCAGTGATGAGATGCGGAGGAACAGG
AACTTTCTACATATTTTCCTTGGTTGTGAGAGGCTTTTGGTGAGGATTCA
GAGAGATTCGTTGTGTGAGAAAGCATGAAGGCGTGACTCGATACCGTGAT
GGTTTGACGAGCACGAGCACGCCCCCGATTAATACAACACTACAACACGA
CAAAACGGATACAACACGTTTCCCAACACGTCCCTACCCTACCACGGCCC
GTCATGGCCCAGCTGCTCTACACTCCCAACACAAAGAACTGAGCCACCGA
ATTATCGATCAACGTCTGCACTATACCCCCAGAAACATATCCGCTGGTTG
GAGAAAGGTAAGAGAGGAGACAAGAGATTCGAAGTTGGGTCGGTTAGAGA
TGAATTGATCGATGCGAGGGGGAAAGCGACCACGACAGACTAGGCGATTT
AGGTTTTGGCCTCAGGCTCTTGTACGAAGAAAGGGTGTGCCGACGCCGAG
AAGCACTGGACATTCACTTGTTACGTGGTCTTTTTTTGGGCTGTCTCTTT
TCTCAAAGAGGGACAACTGACCAAGTCGTTAAGAAAGCGGCTCAGAGAAA
GGTGCATGAGTGCTTGAACTACGGCTGAGTAGAACAGGCCTTCGTCTACC
TGCGCTGTTCGGGTATGTACATCGCATGTGTGCATTGTGGAGGATGTGCA
CTCGCGCCAACTCGCGGGAAAATAATAACTGCTCGGCGAGCGGACGACCC
TTTCGTGCTACCGGCTGAACTGAACAACCAATGGTTGGTGTTGTTGGGTG
TTGTTAGTGTGCTCGTATGTGTGTGAGCCTCTTGCTTGATTGGATGATTG
AATTGTGCTCGAAATTCGCCGTTTCCCCACCTCCCTGCATGCATGTGCGC
CCGTTTTCCGAGGGTAACACATGGAGTCTGGCGTGACCGCCGATGGCGGT
back to topCoding sequence (CDS) from alignment at Scaffold_519:193188..195287+ >EsuBft1007_4a-0001 ID=EsuBft1007_4a-0001|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=645bp|location=Sequence derived from alignment at Scaffold_519:193188..195287+ (Ectocarpus subulatus male Bft15b)
ATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGAGC
AGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCAC
TTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACATTT
GAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGTGTTTGTGGATGCCGA
CTATGCAAGCAAGGCAGCAGACCGTAGGTCGGTCTCAGGAGGACTAGTGA
TGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTC
ACGCTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTGAA
GGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGCAG
GTATGCCGTGCATTCCGGTCTTCGAGGATAATCAGGGAGCGATTCAGATT
GCGCACAACCCGATCACGAACTCAAACTCGAAGCACATCGATGTACGGCA
TCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATTACGCATG
TGACGCCGGAGTTTCAGCATGCAGATTTCTTGACGAAGGCTATCAGCAAG
GAATCTTTTGCGTTGCACAGAGACTTTGTGATGAATTTGCAGTGA back to top
|