Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 15368.BRADI3G29820.1 |
| ProteomeId | EsuBft1007_3 |
| Protein domains | IPR012337 |
| Protein domains | IPR001584 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 2818 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.44e-22 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K20093 |
| EC | 3.6.4.12 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
| BRITE | ko00000,ko01000,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1007_3a-0001 ID=EsuBft1007_3a-0001|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2818bp|location=Sequence derived from alignment at Scaffold_519:190369..193186+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTAGTGCCTACGTCAATCCGAGATTTTCAGCCTGCCCTAGCCGCAGCCA
TCGCCTCATCCGACGTCCTGTCCCCCTCAGTCGTGAACCCGAATGTGTCG
CGAGAGATAGAGATCATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGAT
GGACATGAGTATGTTCTTGGATGTAGGCTTGATGAACGGACAAGACTCGG
TCCCACCGGGTGACTTTTATCCCGACCCATTAGGCGTGTGTGAGTCTGTG
AAGCCCCCCGTTGCGTTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAA
AAACTTCGTTGCCGAGTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCC
TTTCCCATGCTTTGGCGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTA
GGAAAACCCACGTCCACCATCGACATTAATTTGTTCCACGCTTCCACCGG
CCACGTGAATGAATTTTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTC
AATTGGTGGGGGAACTGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGC
AGGAGGGCCCCGGTGCCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTT
CGGCAAGGTGCACATCGACATCACCGGCCCGTACTCTGAGGCGTTCGATG
GTTCCCGTTACCTGATTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGG
GCGTACGGCATGCGGGCCAAGAGCGACACCCTGACGTACACGCGGCGTTT
CCTCGCCGACCTGAACGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACA
ACGCGGGGGAGTTCACGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCT
GGCATCCGGCGCGAGTACACCGCGCCCGACACCCCGAAGCAGAATGCGGT
CGTGGAAAGCGCCATCTGGCGAGCCATGAAGGGGGGCCACGCCGCCCGCC
GCCACGTCCTCTCCATGGGCCACTTCGACCTCGCCTCCATCCCCGGTATG
GACGCCAACGGACACCGGCTGTGGCTTGCATCGGCGATCTGGGCCTCCGG
CTGCTTCAACCGTTCCGCGACGTCGGCCAACCCGGCCTGGATGTCGCCGT
TCGAGGCCTTCTTCGGACGCAAACCGCCGCTCAAGGTCGTCCCCTTTTTC
CAGGAGGGGATGATGCGCGTGAAGCGCGCCAGCAAGGCGGACGTCCAATC
CGTTCGTTGCTTCTACCTGCACGGAGCGCGCAACCACTCCGACGCCACTG
CCGTCGTACTCCGCGCCGACACCGGAAGGATCTGCCTGTCCAACAACGTC
GTGTGGATCAACCGCCGCACCGCCGTGCCGGCGCCGGTACCGGCCAGCGG
GGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCCGCCGCTCCTA
CAGCCGCTGCCGCACCGCCACCGCCATGGACATCGCGGACGTACACCCAC
ACCCCGCCCACAGCGACTACCGCTACGCAGCCGCCCGCTTCACCGCCGCC
AGCTTCTCCGTCGATCTTCACAGGGTCCGGAGCTCCGTCGCCGATATCCA
CGGCGTCGTCGAGTGCACCGCCGTCCACCGCAGCCACGCCGCCCCGTCCA
CCGCACGCAAGCGCCGTCGCTCCCGCTCCCCATCACCCGCCGCTTTCACA
GCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTA
CGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCG
CCGTCAGGTGGCGGCACCGCTCTCCAACACCGCCTTGGGCTGCTGTCGAT
GATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGTCG
ATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCTCCCGCT
CCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGGGGGGGC
CGCAGGAGCTGGGGGGCCGGGGGGCCTGCACATGTTCGCAGCAATGTTCG
CCACCCGCGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTGAC
AAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGTGCCGAA
AACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGGATGATG
CAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTTAGTCCG
GTGTAGCAACCAGTAGAAAACTTCATCAACGCCAAGTGGGTATTCAACTG
TAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCACGACTTGTAG
CGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCA
CCCACCGTATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCGTGTGA
GCAGAATCTTGACTTGTGCCATTTCGACATTCAGCAGGCTTTTGTGCAGT
CTGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGG
TTATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCA
GGCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTTAG
GTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGATTGATGGAGGAG
GGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGCTGT
AGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGATGG
TCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTTTAC
GAGAGAGACGTAGAGAGA back to topprotein sequence of EsuBft1007_3a-0001 >EsuBft1007_3 ID=EsuBft1007_3|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=696bp
MPLESQDNLPLMDMSMFLDVGLMNGQDSVPPGDFYPDPLGVCESVKPPVA
FAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTS
TIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPV
PRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMR
AKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRRE
YTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSMGHFDLASIPGMDANGH
RLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMM
RVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNVVWINR
RTAVPAPVPASGGGSSVTAAPSPAAAAPTAAAAPPPPWTSRTYTHTPPTA
TTATQPPASPPPASPSIFTGSGAPSPISTASSSAPPSTAATPPRPPHASA
VAPAPHHPPLSQRAVRELGEKETRVHGRTRGDRVRFMDEQQQPPSPSGGG
TALQHRLGLLSMMGKDALVSSLATREAVDQGRRDLPPSAKIAPPAPPQPQ
DTSLAGHGSGGAAGAGGPGGLHMFAAMFATREDVEATLRAKRPPDKTPDL
PHCLASDLRVPKTFKEAMRSQHSELWDDAVGREFFGLLDAGTFSPV back to topmRNA from alignment at Scaffold_519:190369..193186+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1007_3a-0001 ID=EsuBft1007_3a-0001|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2818bp|location=Sequence derived from alignment at Scaffold_519:190369..193186+ (Ectocarpus subulatus male Bft15b)
TGTAGTGCCTACGTCAATCCGAGATTTTCAGCCTGCCCTAGCCGCAGCCA
TCGCCTCATCCGACGTCCTGTCCCCCTCAGTCGTGAACCCGAATGTGTCG
CGAGAGATAGAGATCATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGAT
GGACATGAGTATGTTCTTGGATGTAGGCTTGATGAACGGACAAGACTCGG
TCCCACCGGGTGACTTTTATCCCGACCCATTAGGCGTGTGTGAGTCTGTG
AAGCCCCCCGTTGCGTTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAA
AAACTTCGTTGCCGAGTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCC
TTTCCCATGCTTTGGCGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTA
GGAAAACCCACGTCCACCATCGACATTAATTTGTTCCACGCTTCCACCGG
CCACGTGAATGAATTTTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTC
AATTGGTGGGGGAACTGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGC
AGGAGGGCCCCGGTGCCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTT
CGGCAAGGTGCACATCGACATCACCGGCCCGTACTCTGAGGCGTTCGATG
GTTCCCGTTACCTGATTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGG
GCGTACGGCATGCGGGCCAAGAGCGACACCCTGACGTACACGCGGCGTTT
CCTCGCCGACCTGAACGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACA
ACGCGGGGGAGTTCACGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCT
GGCATCCGGCGCGAGTACACCGCGCCCGACACCCCGAAGCAGAATGCGGT
CGTGGAAAGCGCCATCTGGCGAGCCATGAAGGGGGGCCACGCCGCCCGCC
GCCACGTCCTCTCCATGGGCCACTTCGACCTCGCCTCCATCCCCGGTATG
GACGCCAACGGACACCGGCTGTGGCTTGCATCGGCGATCTGGGCCTCCGG
CTGCTTCAACCGTTCCGCGACGTCGGCCAACCCGGCCTGGATGTCGCCGT
TCGAGGCCTTCTTCGGACGCAAACCGCCGCTCAAGGTCGTCCCCTTTTTC
CAGGAGGGGATGATGCGCGTGAAGCGCGCCAGCAAGGCGGACGTCCAATC
CGTTCGTTGCTTCTACCTGCACGGAGCGCGCAACCACTCCGACGCCACTG
CCGTCGTACTCCGCGCCGACACCGGAAGGATCTGCCTGTCCAACAACGTC
GTGTGGATCAACCGCCGCACCGCCGTGCCGGCGCCGGTACCGGCCAGCGG
GGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCCGCCGCTCCTA
CAGCCGCTGCCGCACCGCCACCGCCATGGACATCGCGGACGTACACCCAC
ACCCCGCCCACAGCGACTACCGCTACGCAGCCGCCCGCTTCACCGCCGCC
AGCTTCTCCGTCGATCTTCACAGGGTCCGGAGCTCCGTCGCCGATATCCA
CGGCGTCGTCGAGTGCACCGCCGTCCACCGCAGCCACGCCGCCCCGTCCA
CCGCACGCAAGCGCCGTCGCTCCCGCTCCCCATCACCCGCCGCTTTCACA
GCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTA
CGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCG
CCGTCAGGTGGCGGCACCGCTCTCCAACACCGCCTTGGGCTGCTGTCGAT
GATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGTCG
ATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCTCCCGCT
CCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGGGGGGGC
CGCAGGAGCTGGGGGGCCGGGGGGCCTGCACATGTTCGCAGCAATGTTCG
CCACCCGCGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTGAC
AAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGTGCCGAA
AACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGGATGATG
CAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTTAGTCCG
GTGTAGCAACCAGTAGAAAACTTCATCAACGCCAAGTGGGTATTCAACTG
TAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCACGACTTGTAG
CGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCA
CCCACCGTATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCGTGTGA
GCAGAATCTTGACTTGTGCCATTTCGACATTCAGCAGGCTTTTGTGCAGT
CTGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGG
TTATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCA
GGCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTTAG
GTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGATTGATGGAGGAG
GGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGCTGT
AGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGATGG
TCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTTTAC
GAGAGAGACGTAGAGAGA back to topCoding sequence (CDS) from alignment at Scaffold_519:190369..193186+ >EsuBft1007_3a-0001 ID=EsuBft1007_3a-0001|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2091bp|location=Sequence derived from alignment at Scaffold_519:190369..193186+ (Ectocarpus subulatus male Bft15b)
ATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGATGGACATGAGTATGTT
CTTGGATGTAGGCTTGATGAACGGACAAGACTCGGTCCCACCGGGTGACT
TTTATCCCGACCCATTAGGCGTGTGTGAGTCTGTGAAGCCCCCCGTTGCG
TTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAAAAACTTCGTTGCCGA
GTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCCTTTCCCATGCTTTGG
CGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTAGGAAAACCCACGTCC
ACCATCGACATTAATTTGTTCCACGCTTCCACCGGCCACGTGAATGAATT
TTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTCAATTGGTGGGGGAAC
TGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGCAGGAGGGCCCCGGTG
CCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTTCGGCAAGGTGCACAT
CGACATCACCGGCCCGTACTCTGAGGCGTTCGATGGTTCCCGTTACCTGA
TTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGGGCGTACGGCATGCGG
GCCAAGAGCGACACCCTGACGTACACGCGGCGTTTCCTCGCCGACCTGAA
CGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACAACGCGGGGGAGTTCA
CGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCTGGCATCCGGCGCGAG
TACACCGCGCCCGACACCCCGAAGCAGAATGCGGTCGTGGAAAGCGCCAT
CTGGCGAGCCATGAAGGGGGGCCACGCCGCCCGCCGCCACGTCCTCTCCA
TGGGCCACTTCGACCTCGCCTCCATCCCCGGTATGGACGCCAACGGACAC
CGGCTGTGGCTTGCATCGGCGATCTGGGCCTCCGGCTGCTTCAACCGTTC
CGCGACGTCGGCCAACCCGGCCTGGATGTCGCCGTTCGAGGCCTTCTTCG
GACGCAAACCGCCGCTCAAGGTCGTCCCCTTTTTCCAGGAGGGGATGATG
CGCGTGAAGCGCGCCAGCAAGGCGGACGTCCAATCCGTTCGTTGCTTCTA
CCTGCACGGAGCGCGCAACCACTCCGACGCCACTGCCGTCGTACTCCGCG
CCGACACCGGAAGGATCTGCCTGTCCAACAACGTCGTGTGGATCAACCGC
CGCACCGCCGTGCCGGCGCCGGTACCGGCCAGCGGGGGGGGTTCTTCGGT
CACCGCGGCGCCCTCGCCGGCCGCCGCCGCTCCTACAGCCGCTGCCGCAC
CGCCACCGCCATGGACATCGCGGACGTACACCCACACCCCGCCCACAGCG
ACTACCGCTACGCAGCCGCCCGCTTCACCGCCGCCAGCTTCTCCGTCGAT
CTTCACAGGGTCCGGAGCTCCGTCGCCGATATCCACGGCGTCGTCGAGTG
CACCGCCGTCCACCGCAGCCACGCCGCCCCGTCCACCGCACGCAAGCGCC
GTCGCTCCCGCTCCCCATCACCCGCCGCTTTCACAGCGAGCCGTCAGAGA
GTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTACGCGCGGCGACCGAG
TGCGCTTCATGGATGAGCAACAGCAACCGCCGTCGCCGTCAGGTGGCGGC
ACCGCTCTCCAACACCGCCTTGGGCTGCTGTCGATGATGGGCAAGGATGC
GCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGTCGATCAAGGACGTCGAG
ACCTGCCACCGTCCGCCAAAATCGCCCCTCCCGCTCCCCCACAGCCGCAA
GATACGAGTTTAGCAGGCCATGGGAGCGGGGGGGCCGCAGGAGCTGGGGG
GCCGGGGGGCCTGCACATGTTCGCAGCAATGTTCGCCACCCGCGAGGATG
TGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTGACAAGACGCCGGACCTT
CCTCACTGCCTCGCCAGCGACCTCCGAGTGCCGAAAACGTTCAAGGAGGC
CATGCGGTCTCAACATTCAGAGTTGTGGGATGATGCAGTCGGTCGTGAGT
TTTTCGGTCTGCTGGATGCAGGTACTTTTAGTCCGGTGTAG back to top
|