EsuBft1007_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1007_3a-0001
Unique Name	EsuBft1007_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_519	contig	Scaffold_519:190369..193186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	15368.BRADI3G29820.1
ProteomeId	EsuBft1007_3
Protein domains	IPR012337
Protein domains	IPR001584
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	2818
Hectar predicted targeting category	other localisation
Evalue	4.44e-22
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K20093
EC	3.6.4.12
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L
BRITE	ko00000,ko01000,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_3a	EsuBft1007_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_519 190369..193186 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_3a-0001-exon	EsuBft1007_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_519 190369..193186 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_3a-0001-exon	agat-five_prime_utr-34	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_519 190369..190483 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_3a-0001-cds	EsuBft1007_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_519 190484..192574 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_3a-0001-exon	agat-three_prime_utr-59	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_519 192575..193186 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_3a-0001	EsuBft1007_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_519 190484..192574 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_519:190369..193186+
coding sequence from alignment at Scaffold_519:190369..193186+

spliced messenger RNA

>EsuBft1007_3a-0001 ID=EsuBft1007_3a-0001|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2818bp|location=Sequence derived from alignment at Scaffold_519:190369..193186+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTAGTGCCTACGTCAATCCGAGATTTTCAGCCTGCCCTAGCCGCAGCCA
TCGCCTCATCCGACGTCCTGTCCCCCTCAGTCGTGAACCCGAATGTGTCG
CGAGAGATAGAGATCATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGAT
GGACATGAGTATGTTCTTGGATGTAGGCTTGATGAACGGACAAGACTCGG
TCCCACCGGGTGACTTTTATCCCGACCCATTAGGCGTGTGTGAGTCTGTG
AAGCCCCCCGTTGCGTTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAA
AAACTTCGTTGCCGAGTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCC
TTTCCCATGCTTTGGCGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTA
GGAAAACCCACGTCCACCATCGACATTAATTTGTTCCACGCTTCCACCGG
CCACGTGAATGAATTTTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTC
AATTGGTGGGGGAACTGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGC
AGGAGGGCCCCGGTGCCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTT
CGGCAAGGTGCACATCGACATCACCGGCCCGTACTCTGAGGCGTTCGATG
GTTCCCGTTACCTGATTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGG
GCGTACGGCATGCGGGCCAAGAGCGACACCCTGACGTACACGCGGCGTTT
CCTCGCCGACCTGAACGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACA
ACGCGGGGGAGTTCACGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCT
GGCATCCGGCGCGAGTACACCGCGCCCGACACCCCGAAGCAGAATGCGGT
CGTGGAAAGCGCCATCTGGCGAGCCATGAAGGGGGGCCACGCCGCCCGCC
GCCACGTCCTCTCCATGGGCCACTTCGACCTCGCCTCCATCCCCGGTATG
GACGCCAACGGACACCGGCTGTGGCTTGCATCGGCGATCTGGGCCTCCGG
CTGCTTCAACCGTTCCGCGACGTCGGCCAACCCGGCCTGGATGTCGCCGT
TCGAGGCCTTCTTCGGACGCAAACCGCCGCTCAAGGTCGTCCCCTTTTTC
CAGGAGGGGATGATGCGCGTGAAGCGCGCCAGCAAGGCGGACGTCCAATC
CGTTCGTTGCTTCTACCTGCACGGAGCGCGCAACCACTCCGACGCCACTG
CCGTCGTACTCCGCGCCGACACCGGAAGGATCTGCCTGTCCAACAACGTC
GTGTGGATCAACCGCCGCACCGCCGTGCCGGCGCCGGTACCGGCCAGCGG
GGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCCGCCGCTCCTA
CAGCCGCTGCCGCACCGCCACCGCCATGGACATCGCGGACGTACACCCAC
ACCCCGCCCACAGCGACTACCGCTACGCAGCCGCCCGCTTCACCGCCGCC
AGCTTCTCCGTCGATCTTCACAGGGTCCGGAGCTCCGTCGCCGATATCCA
CGGCGTCGTCGAGTGCACCGCCGTCCACCGCAGCCACGCCGCCCCGTCCA
CCGCACGCAAGCGCCGTCGCTCCCGCTCCCCATCACCCGCCGCTTTCACA
GCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTA
CGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCG
CCGTCAGGTGGCGGCACCGCTCTCCAACACCGCCTTGGGCTGCTGTCGAT
GATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGTCG
ATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCTCCCGCT
CCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGGGGGGGC
CGCAGGAGCTGGGGGGCCGGGGGGCCTGCACATGTTCGCAGCAATGTTCG
CCACCCGCGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTGAC
AAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGTGCCGAA
AACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGGATGATG
CAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTTAGTCCG
GTGTAGCAACCAGTAGAAAACTTCATCAACGCCAAGTGGGTATTCAACTG
TAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCACGACTTGTAG
CGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCA
CCCACCGTATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCGTGTGA
GCAGAATCTTGACTTGTGCCATTTCGACATTCAGCAGGCTTTTGTGCAGT
CTGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGG
TTATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCA
GGCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTTAG
GTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGATTGATGGAGGAG
GGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGCTGT
AGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGATGG
TCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTTTAC
GAGAGAGACGTAGAGAGA

protein sequence of EsuBft1007_3a-0001

>EsuBft1007_3 ID=EsuBft1007_3|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=696bp
MPLESQDNLPLMDMSMFLDVGLMNGQDSVPPGDFYPDPLGVCESVKPPVA
FAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTS
TIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPV
PRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGMR
AKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRRE
YTAPDTPKQNAVVESAIWRAMKGGHAARRHVLSMGHFDLASIPGMDANGH
RLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMM
RVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNVVWINR
RTAVPAPVPASGGGSSVTAAPSPAAAAPTAAAAPPPPWTSRTYTHTPPTA
TTATQPPASPPPASPSIFTGSGAPSPISTASSSAPPSTAATPPRPPHASA
VAPAPHHPPLSQRAVRELGEKETRVHGRTRGDRVRFMDEQQQPPSPSGGG
TALQHRLGLLSMMGKDALVSSLATREAVDQGRRDLPPSAKIAPPAPPQPQ
DTSLAGHGSGGAAGAGGPGGLHMFAAMFATREDVEATLRAKRPPDKTPDL
PHCLASDLRVPKTFKEAMRSQHSELWDDAVGREFFGLLDAGTFSPV

mRNA from alignment at Scaffold_519:190369..193186+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1007_3a-0001 ID=EsuBft1007_3a-0001|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2818bp|location=Sequence derived from alignment at Scaffold_519:190369..193186+ (Ectocarpus subulatus male Bft15b)
TGTAGTGCCTACGTCAATCCGAGATTTTCAGCCTGCCCTAGCCGCAGCCA
TCGCCTCATCCGACGTCCTGTCCCCCTCAGTCGTGAACCCGAATGTGTCG
CGAGAGATAGAGATCATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGAT
GGACATGAGTATGTTCTTGGATGTAGGCTTGATGAACGGACAAGACTCGG
TCCCACCGGGTGACTTTTATCCCGACCCATTAGGCGTGTGTGAGTCTGTG
AAGCCCCCCGTTGCGTTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAA
AAACTTCGTTGCCGAGTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCC
TTTCCCATGCTTTGGCGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTA
GGAAAACCCACGTCCACCATCGACATTAATTTGTTCCACGCTTCCACCGG
CCACGTGAATGAATTTTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTC
AATTGGTGGGGGAACTGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGC
AGGAGGGCCCCGGTGCCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTT
CGGCAAGGTGCACATCGACATCACCGGCCCGTACTCTGAGGCGTTCGATG
GTTCCCGTTACCTGATTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGG
GCGTACGGCATGCGGGCCAAGAGCGACACCCTGACGTACACGCGGCGTTT
CCTCGCCGACCTGAACGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACA
ACGCGGGGGAGTTCACGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCT
GGCATCCGGCGCGAGTACACCGCGCCCGACACCCCGAAGCAGAATGCGGT
CGTGGAAAGCGCCATCTGGCGAGCCATGAAGGGGGGCCACGCCGCCCGCC
GCCACGTCCTCTCCATGGGCCACTTCGACCTCGCCTCCATCCCCGGTATG
GACGCCAACGGACACCGGCTGTGGCTTGCATCGGCGATCTGGGCCTCCGG
CTGCTTCAACCGTTCCGCGACGTCGGCCAACCCGGCCTGGATGTCGCCGT
TCGAGGCCTTCTTCGGACGCAAACCGCCGCTCAAGGTCGTCCCCTTTTTC
CAGGAGGGGATGATGCGCGTGAAGCGCGCCAGCAAGGCGGACGTCCAATC
CGTTCGTTGCTTCTACCTGCACGGAGCGCGCAACCACTCCGACGCCACTG
CCGTCGTACTCCGCGCCGACACCGGAAGGATCTGCCTGTCCAACAACGTC
GTGTGGATCAACCGCCGCACCGCCGTGCCGGCGCCGGTACCGGCCAGCGG
GGGGGGTTCTTCGGTCACCGCGGCGCCCTCGCCGGCCGCCGCCGCTCCTA
CAGCCGCTGCCGCACCGCCACCGCCATGGACATCGCGGACGTACACCCAC
ACCCCGCCCACAGCGACTACCGCTACGCAGCCGCCCGCTTCACCGCCGCC
AGCTTCTCCGTCGATCTTCACAGGGTCCGGAGCTCCGTCGCCGATATCCA
CGGCGTCGTCGAGTGCACCGCCGTCCACCGCAGCCACGCCGCCCCGTCCA
CCGCACGCAAGCGCCGTCGCTCCCGCTCCCCATCACCCGCCGCTTTCACA
GCGAGCCGTCAGAGAGTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTA
CGCGCGGCGACCGAGTGCGCTTCATGGATGAGCAACAGCAACCGCCGTCG
CCGTCAGGTGGCGGCACCGCTCTCCAACACCGCCTTGGGCTGCTGTCGAT
GATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGTCG
ATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCTCCCGCT
CCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGGGGGGGC
CGCAGGAGCTGGGGGGCCGGGGGGCCTGCACATGTTCGCAGCAATGTTCG
CCACCCGCGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTGAC
AAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGTGCCGAA
AACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGGATGATG
CAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTTAGTCCG
GTGTAGCAACCAGTAGAAAACTTCATCAACGCCAAGTGGGTATTCAACTG
TAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCACGACTTGTAG
CGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCA
CCCACCGTATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCGTGTGA
GCAGAATCTTGACTTGTGCCATTTCGACATTCAGCAGGCTTTTGTGCAGT
CTGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAGG
TTATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGCA
GGCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTTAG
GTTTTTTGCAGTGTCTGGCAGATGCGTGTGTTTTTCGATTGATGGAGGAG
GGACGTGTGATCATGATCATCGTGGTCCACGTGGATGACATTTTTGCTGT
AGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGATGG
TCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTTTAC
GAGAGAGACGTAGAGAGA

Coding sequence (CDS) from alignment at Scaffold_519:190369..193186+

>EsuBft1007_3a-0001 ID=EsuBft1007_3a-0001|Name=EsuBft1007_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2091bp|location=Sequence derived from alignment at Scaffold_519:190369..193186+ (Ectocarpus subulatus male Bft15b)
ATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGATGGACATGAGTATGTT
CTTGGATGTAGGCTTGATGAACGGACAAGACTCGGTCCCACCGGGTGACT
TTTATCCCGACCCATTAGGCGTGTGTGAGTCTGTGAAGCCCCCCGTTGCG
TTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAAAAACTTCGTTGCCGA
GTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCCTTTCCCATGCTTTGG
CGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTAGGAAAACCCACGTCC
ACCATCGACATTAATTTGTTCCACGCTTCCACCGGCCACGTGAATGAATT
TTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTCAATTGGTGGGGGAAC
TGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGCAGGAGGGCCCCGGTG
CCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTTCGGCAAGGTGCACAT
CGACATCACCGGCCCGTACTCTGAGGCGTTCGATGGTTCCCGTTACCTGA
TTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGGGCGTACGGCATGCGG
GCCAAGAGCGACACCCTGACGTACACGCGGCGTTTCCTCGCCGACCTGAA
CGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACAACGCGGGGGAGTTCA
CGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCTGGCATCCGGCGCGAG
TACACCGCGCCCGACACCCCGAAGCAGAATGCGGTCGTGGAAAGCGCCAT
CTGGCGAGCCATGAAGGGGGGCCACGCCGCCCGCCGCCACGTCCTCTCCA
TGGGCCACTTCGACCTCGCCTCCATCCCCGGTATGGACGCCAACGGACAC
CGGCTGTGGCTTGCATCGGCGATCTGGGCCTCCGGCTGCTTCAACCGTTC
CGCGACGTCGGCCAACCCGGCCTGGATGTCGCCGTTCGAGGCCTTCTTCG
GACGCAAACCGCCGCTCAAGGTCGTCCCCTTTTTCCAGGAGGGGATGATG
CGCGTGAAGCGCGCCAGCAAGGCGGACGTCCAATCCGTTCGTTGCTTCTA
CCTGCACGGAGCGCGCAACCACTCCGACGCCACTGCCGTCGTACTCCGCG
CCGACACCGGAAGGATCTGCCTGTCCAACAACGTCGTGTGGATCAACCGC
CGCACCGCCGTGCCGGCGCCGGTACCGGCCAGCGGGGGGGGTTCTTCGGT
CACCGCGGCGCCCTCGCCGGCCGCCGCCGCTCCTACAGCCGCTGCCGCAC
CGCCACCGCCATGGACATCGCGGACGTACACCCACACCCCGCCCACAGCG
ACTACCGCTACGCAGCCGCCCGCTTCACCGCCGCCAGCTTCTCCGTCGAT
CTTCACAGGGTCCGGAGCTCCGTCGCCGATATCCACGGCGTCGTCGAGTG
CACCGCCGTCCACCGCAGCCACGCCGCCCCGTCCACCGCACGCAAGCGCC
GTCGCTCCCGCTCCCCATCACCCGCCGCTTTCACAGCGAGCCGTCAGAGA
GTTGGGCGAGAAGGAAACCAGGGTACATGGCCGTACGCGCGGCGACCGAG
TGCGCTTCATGGATGAGCAACAGCAACCGCCGTCGCCGTCAGGTGGCGGC
ACCGCTCTCCAACACCGCCTTGGGCTGCTGTCGATGATGGGCAAGGATGC
GCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGTCGATCAAGGACGTCGAG
ACCTGCCACCGTCCGCCAAAATCGCCCCTCCCGCTCCCCCACAGCCGCAA
GATACGAGTTTAGCAGGCCATGGGAGCGGGGGGGCCGCAGGAGCTGGGGG
GCCGGGGGGCCTGCACATGTTCGCAGCAATGTTCGCCACCCGCGAGGATG
TGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTGACAAGACGCCGGACCTT
CCTCACTGCCTCGCCAGCGACCTCCGAGTGCCGAAAACGTTCAAGGAGGC
CATGCGGTCTCAACATTCAGAGTTGTGGGATGATGCAGTCGGTCGTGAGT
TTTTCGGTCTGCTGGATGCAGGTACTTTTAGTCCGGTGTAG