EsuBft1110_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1110_2a-0001
Unique Name	EsuBft1110_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_518	contig	Scaffold_518:14975..18225 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1110_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	295
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_2a	EsuBft1110_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_518 14975..18225 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_2a-0001-exon	EsuBft1110_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_518 14975..15266 -
EsuBft1110_2a-0001-exon	agat-exon-9448	Ectocarpus subulatus male Bft15b	exon	Scaffold_518 15567..18225 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_2a-0001-exon	agat-three_prime_utr-1053	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_518 14975..15266 -
EsuBft1110_2a-0001-exon	agat-three_prime_utr-1054	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_518 15567..17850 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_2a-0001-cds	EsuBft1110_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_518 17851..18225 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1110_2a-0001	EsuBft1110_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_518 17851..18225 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_518:14975..18225-
coding sequence from alignment at Scaffold_518:14975..18225-

spliced messenger RNA

>EsuBft1110_2a-0001 ID=EsuBft1110_2a-0001|Name=EsuBft1110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2951bp|location=Sequence derived from alignment at Scaffold_518:14975..18225- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCAAATAATAATTGCGCAGCTAGCTGTTCAGGAAAGAAAGTAGT
GGACGCTATCAAAGAACTCAACCAGGAGCATGGAGTATCGGTGGAGATTC
TGAAGGGGATCCTTCCCCCGTCATGGGTTGAGTGGGCCTTAGAACCGGCA
GGAGAAACCGGAAGGCGTCAGCCCACCGTTGCAGAACTGGCAGCACACGA
TGGGGAATCTACTACGCCGAGGAAAGCCCAGCACAAACTGGGCAAGGCGA
TTAACAAGATACAACTTGAAAAGTTCATGGAGTCTCTGGAGCACCTCCCC
CAGGAGGCGGTACCACCCACGCGGGACAACCCCTACGGAGGTCAAGAGGC
CAGGAACATGGCATACGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTATGAATTACGCACCATA
GGTGCATTTACACCCACGATGTTTGCAGTCACTGGCGAGGTACGAAAAAA
GGTATACATGAAATTGTGTAAAGTATTACGTATAAGTCGACTAGAATAGA
AACGTGCAAGCATGTCAGCTATCAATCTGGCTGTGGCAGCTTGGAAAAAT
CGAATGTCATACATCTAATAATAGCAAATCGGCACATTTGACAGTGTAAC
GTCGACATCTTACACCTAGTAGATAACACTGTTTCCCAATGTGGGAATGC
CCGATATTGCTTCAGCGTAGCCATATGTTGGCGCTTATTATACATACCGA
TACAATTTTACCAGGAATGTCTTGCCCTATTTGCATATCCAGAAAGTGTG
CTGATTCCCCACACTGTTCTTGGGTAACGCGAACGGGGTTGTCTATCTCA
TCACCATTCGAATCTAACACCATCGTTGGGTACATACCACCATATTGATT
A

protein sequence of EsuBft1110_2a-0001

>EsuBft1110_2 ID=EsuBft1110_2|Name=EsuBft1110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MESNNNCAASCSGKKVVDAIKELNQEHGVSVEILKGILPPSWVEWALEPA
GETGRRQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLP
QEAVPPTRDNPYGGQEARNMAYAXX

mRNA from alignment at Scaffold_518:14975..18225-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1110_2a-0001 ID=EsuBft1110_2a-0001|Name=EsuBft1110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3251bp|location=Sequence derived from alignment at Scaffold_518:14975..18225- (Ectocarpus subulatus male Bft15b)
ATGGAATCAAATAATAATTGCGCAGCTAGCTGTTCAGGAAAGAAAGTAGT
GGACGCTATCAAAGAACTCAACCAGGAGCATGGAGTATCGGTGGAGATTC
TGAAGGGGATCCTTCCCCCGTCATGGGTTGAGTGGGCCTTAGAACCGGCA
GGAGAAACCGGAAGGCGTCAGCCCACCGTTGCAGAACTGGCAGCACACGA
TGGGGAATCTACTACGCCGAGGAAAGCCCAGCACAAACTGGGCAAGGCGA
TTAACAAGATACAACTTGAAAAGTTCATGGAGTCTCTGGAGCACCTCCCC
CAGGAGGCGGTACCACCCACGCGGGACAACCCCTACGGAGGTCAAGAGGC
CAGGAACATGGCATACGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTATGAATTACGCACCATA
GGTGCATTTACACCCACGATGTTTGCAGTCACTGGCGAGGTACGAAAAAA
GGTATACATGAAATTGTGTAAAGTATTACGTATAAGTCGACTAGAATAGA
AACGTGCAAGCATGTCAGCTATCAATCTGGCTGTGGCAGCTTGGAAAAAT
CGAATGTCAGTACATCTAATAGCAAATCGGCACATTTGACAGTGTAACGT
CGACATCTTACACCTAGTAGATAACACTGTTTCCCAATGTGGGAATGCCC
GATATTGCTTCAGCGTAGCCATATGTTGGCGCTTATTACACATACCAATA
CAATTCTTGCCAGGAATGTCTTGCCCTATTTGCATATCCAGAAAGTGTGC
TGANTGAAATTGTGTAAAGTATTACGCATAAGTCGACTAGAATAGAAACG
TGCAAGCATGTCAGCTATCAATCTGGCTGTGGCAACTTGGAAAAAAAATC
GAATGTCAGTACATCTAATAATAGCAAATCGGCACATTTGACAGTGTAAC
GTCGACATCTTACACCTAGTAGATAACACTGTTTCCCAATGTGGGAATGC
CCGATATTGCTTCAGCGTAGCCATATGTTGGCGCTTATTATACATACCGA
TACAATTTTACCAGGAATGTCTTGCCCTATTTGCATATCCAGAAAGTGTG
CTGATTCCCCACACTGTTCTTGGGTAACGCGAACGGGGTTGTCTATCTCA
TCACCATTCGAATCTAACACCATCGTTGGGTACATACCACCATATTGATT
A

Coding sequence (CDS) from alignment at Scaffold_518:14975..18225-

>EsuBft1110_2a-0001 ID=EsuBft1110_2a-0001|Name=EsuBft1110_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=375bp|location=Sequence derived from alignment at Scaffold_518:14975..18225- (Ectocarpus subulatus male Bft15b)
ATGGAATCAAATAATAATTGCGCAGCTAGCTGTTCAGGAAAGAAAGTAGT
GGACGCTATCAAAGAACTCAACCAGGAGCATGGAGTATCGGTGGAGATTC
TGAAGGGGATCCTTCCCCCGTCATGGGTTGAGTGGGCCTTAGAACCGGCA
GGAGAAACCGGAAGGCGTCAGCCCACCGTTGCAGAACTGGCAGCACACGA
TGGGGAATCTACTACGCCGAGGAAAGCCCAGCACAAACTGGGCAAGGCGA
TTAACAAGATACAACTTGAAAAGTTCATGGAGTCTCTGGAGCACCTCCCC
CAGGAGGCGGTACCACCCACGCGGGACAACCCCTACGGAGGTCAAGAGGC
CAGGAACATGGCATACGCACNNNNN