EsuBft1088_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1088_12a-0001
Unique NameEsuBft1088_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_515contigScaffold_515:195332..196063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1088_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length21
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_12aEsuBft1088_12aEctocarpus subulatus male Bft15bgeneScaffold_515 195332..196063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_12a-0001EsuBft1088_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_515 195910..196063 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_12a-0001-exonagat-exon-12204Ectocarpus subulatus male Bft15bexonScaffold_515 195332..195415 -
EsuBft1088_12a-0001-exonEsuBft1088_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_515 195886..196017 -
EsuBft1088_12a-0001-exonagat-exon-12203Ectocarpus subulatus male Bft15bexonScaffold_515 196061..196063 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_12a-0001-exonagat-three_prime_utr-817Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_515 195332..195415 -
EsuBft1088_12a-0001-exonagat-three_prime_utr-818Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_515 195886..195909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1088_12a-0001-cdsEsuBft1088_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_515 195910..196017 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1088_12a-0001 ID=EsuBft1088_12a-0001|Name=EsuBft1088_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=219bp|location=Sequence derived from alignment at Scaffold_515:195332..196063- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGCGGCAGCAACAACAGCATGCAGGGCACGGCTTTCTTGGCGAA
GGCAGTCAGTAGCGCGGCGCTAGTACGCAATCTGAACCGATCCCGCGGGG
AACCATCCTGACAAAACACAGCAGCAGCAGTAGTATAGTAGATCCTCAAC
CCCCCGACGGATTCTCTTGATGATGATAGGTGTTATCTGGACTTGGGAAG
GTGTGTTATTTGTGTGATC
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protein sequence of EsuBft1088_12a-0001

>EsuBft1088_12 ID=EsuBft1088_12|Name=EsuBft1088_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=36bp
MGCGSNNSMQGTAFLAKAVSSAALVRNLNRSRGEPS
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mRNA from alignment at Scaffold_515:195332..196063-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1088_12a-0001 ID=EsuBft1088_12a-0001|Name=EsuBft1088_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=732bp|location=Sequence derived from alignment at Scaffold_515:195332..196063- (Ectocarpus subulatus male Bft15b)
ATGGTCATATCATGACTTTGATGCGAGAGGCCGAGAGGCCCTGCAGGGCT
GCGGCAGCAACAACAGCATGCAGGGCACGGCTTTCTTGGCGAAGGCAGTC
AGTAGCGCGGCGCTAGTACGCAATCTGAACCGATCCCGCGGGGAACCATC
CTGACAAAACACAGCAGCAGCAGTAGTAGTAGATCCTCAACCCCCCGACG
GATTCTCTTGATGATGATAGGTGTTATCTGGACTTGGGAAGGTGTGTTAT
TTGTGTGATCATCGGTCTACTCTTTTGAAGTAGTTGGCCCGTTGGTTGGG
CCCACTCAACATCAATAAATACCCGCCGGGTNCGACTGTGACACGACAGA
TCGCAAATGTTGCGTCAGGCTCACAACTTGCCCGCCGCATTCGTCTCAAG
CCTTCCGAGTTTCCCGCCAGAGTGAACGCAAGCAGTCAGTCCAGCATGAA
CCAAAAACAACAAAAAACCGTGATGGTCATATCATGACTTTGATGCGAGA
GGCCGAGAGGCCCTGCAGGGCTGCGGCAGCAACAACAGCATGCAGGGCAC
GGCTTTCTTGGCGAAGGCAGTCAGTAGCGCGGCGCTAGTACGCAATCTGA
ACCGATCCCGCGGGGAACCATCCTGACAAAACACAGCAGCAGCAGTAGTA
GTAGATCCTCAACCCCCCGACGGATTCTCTTGATGATGATAGGTGTTATC
TGGACTTGGGAAGGTGTGTTATTTGTGTGATC
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Coding sequence (CDS) from alignment at Scaffold_515:195332..196063-

>EsuBft1088_12a-0001 ID=EsuBft1088_12a-0001|Name=EsuBft1088_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=111bp|location=Sequence derived from alignment at Scaffold_515:195332..196063- (Ectocarpus subulatus male Bft15b)
ATGGGCTGCGGCAGCAACAACAGCATGCAGGGCACGGCTTTCTTGGCGAA
GGCAGTCAGTAGCGCGGCGCTAGTACGCAATCTGAACCGATCCCGCGGGG
AACCATCCTGA
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