EsuBft98_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft98_18a-0001
Unique Name	EsuBft98_18a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_510	contig	Scaffold_510:111737..112774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	13735.ENSPSIP00000000063
ProteomeId	EsuBft98_18
Protein domains	SSF56672
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1038
Hectar predicted targeting category	other localisation
Evalue	4.68e-23
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3A35Z@33154\|Opisthokonta,3BQYF@33208\|Metazoa,3D7GC@33213\|Bilateria,48ICJ@7711\|Chordata,49G95@7742\|Vertebrata,4CMJX@8459\|Testudines
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0016779
GO	0006278
GO	0004519
GO	0032197
GO	0090305

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft98_18a	EsuBft98_18a	Ectocarpus subulatus male Bft15b	gene	Scaffold_510 111737..112774 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_18a-0001-exon	EsuBft98_18a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 111737..112774 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_18a-0001-exon	agat-five_prime_utr-15539	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_510 111737..111899 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_18a-0001-cds	EsuBft98_18a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_510 111900..112397 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_18a-0001-exon	agat-three_prime_utr-23832	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_510 112398..112774 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_18a-0001	EsuBft98_18	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_510 111900..112397 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_510:111737..112774+
coding sequence from alignment at Scaffold_510:111737..112774+

spliced messenger RNA

>EsuBft98_18a-0001 ID=EsuBft98_18a-0001|Name=EsuBft98_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_510:111737..112774+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCATG
AAGGCAAGGTCCCCATCAATATCATCACCAACCGTCTAAGCGCCTTCTGC
GAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCGGGCG
ATCCACCGTCGACATGCTGTTCGTCGTGCTCCGCCTCCAGGAGCTGGAGC
GGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAAGAAGGCG
TATGATCCGGTGGACCGAGTGATGCTGTGGAAGGTGTTGGCCAGGACCGG
GATTCCCACGAAGTTGATCGAAGTTATCCGCCAATTCCACGATGGGATGC
GGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTCCGTG
ACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCAACAT
TTCTTCGTCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGG
TGTTCTTCTTCGGAGCCTGGTGTGCTTGGAGGAAGGGAAAACGGAAGCGG
GGGGGGGGAAGGAGACACCCCTTGACCGAGTACAGAGGGCAGTATGGGGG
ATGCTATATGCCAATGATGCCAGCGTCGTATCGAGGTCCGCAGAAGGACT
GGCGAGGATGATGACCATCATCGTCGAGGTGTTCGGGGAGTTCGGGCTGA
CAGTGTCGGAGAAGAAGGCGGAGACGCTCCTGATGCGCGCGAAGGACAAG
CCGACTACAACATCACAGCCCCCCCCGCCTCCACCGCTGACCATCGAAGC
CGCGGGGCAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCC
TCGTCAACGAATATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGA
GGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft98_18a-0001

>EsuBft98_18 ID=EsuBft98_18|Name=EsuBft98_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MLFVVLRLQELERRKKIPLYMCFVDLKKAYDPVDRVMLWKVLARTGIPTK
LIEVIRQFHDGMRARVRMDDGELSDWFSVTQGVRQGCVLSPLLFNISSSR
SSRSLSSDSARMVFFFGAWCAWRKGKRKRGGGRRHPLTEYRGQYGGCYMP
MMPASYRGPQKDWRG

mRNA from alignment at Scaffold_510:111737..112774+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft98_18a-0001 ID=EsuBft98_18a-0001|Name=EsuBft98_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_510:111737..112774+ (Ectocarpus subulatus male Bft15b)
TGACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCATG
AAGGCAAGGTCCCCATCAATATCATCACCAACCGTCTAAGCGCCTTCTGC
GAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCGGGCG
ATCCACCGTCGACATGCTGTTCGTCGTGCTCCGCCTCCAGGAGCTGGAGC
GGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAAGAAGGCG
TATGATCCGGTGGACCGAGTGATGCTGTGGAAGGTGTTGGCCAGGACCGG
GATTCCCACGAAGTTGATCGAAGTTATCCGCCAATTCCACGATGGGATGC
GGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTCCGTG
ACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCAACAT
TTCTTCGTCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGG
TGTTCTTCTTCGGAGCCTGGTGTGCTTGGAGGAAGGGAAAACGGAAGCGG
GGGGGGGGAAGGAGACACCCCTTGACCGAGTACAGAGGGCAGTATGGGGG
ATGCTATATGCCAATGATGCCAGCGTCGTATCGAGGTCCGCAGAAGGACT
GGCGAGGATGATGACCATCATCGTCGAGGTGTTCGGGGAGTTCGGGCTGA
CAGTGTCGGAGAAGAAGGCGGAGACGCTCCTGATGCGCGCGAAGGACAAG
CCGACTACAACATCACAGCCCCCCCCGCCTCCACCGCTGACCATCGAAGC
CGCGGGGCAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGTGGCC
TCGTCAACGAATATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGA
GGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_510:111737..112774+

>EsuBft98_18a-0001 ID=EsuBft98_18a-0001|Name=EsuBft98_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_510:111737..112774+ (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTCGTGCTCCGCCTCCAGGAGCTGGAGCGGAGAAAGAAAAT
ACCGCTCTACATGTGCTTCGTCGACTTGAAGAAGGCGTATGATCCGGTGG
ACCGAGTGATGCTGTGGAAGGTGTTGGCCAGGACCGGGATTCCCACGAAG
TTGATCGAAGTTATCCGCCAATTCCACGATGGGATGCGGGCCCGGGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTCCGTGACACAGGGCGTGC
GACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATTTCTTCGTCGAGG
TCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGGTGTTCTTCTTCGG
AGCCTGGTGTGCTTGGAGGAAGGGAAAACGGAAGCGGGGGGGGGGAAGGA
GACACCCCTTGACCGAGTACAGAGGGCAGTATGGGGGATGCTATATGCCA
ATGATGCCAGCGTCGTATCGAGGTCCGCAGAAGGACTGGCGAGGATGA