EsuBft989_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft989_3a-0001
Unique NameEsuBft989_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_504contigScaffold_504:154533..157515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolGT23
StatusManually annotated
Seed ortholog2880.D7FJM3
ProteomeIdEsuBft989_3
Protein domainsIPR027350
Protein domainsPTHR13132
Ownerapollo_admin@sb-roscoff.fr
Notealpha-( )-fucosyltransferase os:pongo abelii gn:fut8 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length971
Hectar predicted targeting categoryother localisation
Evalue1.77e-149
EggNOG OGsKOG3705@1|root,KOG3705@2759|Eukaryota
Date last modified2016-09-01
Date creation2016-06-13
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
EC2.4.1.68
DescriptionAlpha-(1,6)-fucosyltransferase, family GT23
Descriptionglycoprotein 6-alpha-L-fucosyltransferase activity
COG categoryM
CAZyGT23
BRITEko00000,ko00001,ko00002,ko01000,ko01003
NoteTransfers L-fucose from GDP-L-fucose to acceptor molecules. Belongs to the family GT23 of the glycosyltransferases.
NoteHerve C., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0046921
GO0000030
GO0004571
EC2.4.1.-
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft989_3aEsuBft989_3aEctocarpus subulatus male Bft15bgeneScaffold_504 154533..157515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft989_3a-0001EsuBft989_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_504 154548..157438 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft989_3a-0001-exonagat-exon-71863Ectocarpus subulatus male Bft15bexonScaffold_504 154533..154739 +
EsuBft989_3a-0001-exonagat-exon-71864Ectocarpus subulatus male Bft15bexonScaffold_504 154999..155038 +
EsuBft989_3a-0001-exonEsuBft989_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_504 155111..155358 +
EsuBft989_3a-0001-exonagat-exon-71866Ectocarpus subulatus male Bft15bexonScaffold_504 156440..156655 +
EsuBft989_3a-0001-exonagat-exon-71865Ectocarpus subulatus male Bft15bexonScaffold_504 157256..157515 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft989_3a-0001-exonagat-five_prime_utr-15526Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_504 154533..154547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft989_3a-0001-cdsEsuBft989_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_504 154548..154739 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft989_3a-0001-exonagat-three_prime_utr-23819Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_504 157439..157515 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft989_3a-0001 ID=EsuBft989_3a-0001|Name=EsuBft989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=971bp|location=Sequence derived from alignment at Scaffold_504:154533..157515+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGTGGAAACATTTTATGACGAGGAAGGGGGTGTCAAAGGAAGACCTCGT
GGAAGCCCCTAAGGTGCACTGGCAGCGCATCCGAACCCAGCAGGCTTGGC
GCGCACAGGAGGAGGCGCTAAAGGAATACGGGGTGGACACCTTTGGGGCC
CTGTCGGTGAGGCAGCAGTGGTTGTCGAAAGGACCGTTGCTGTTATGGGG
CATTCGTACTGAGGAGCGTTGTCCCGGCCATGCAAAAGGAGCCGAAGGGT
GCGAAGACTTGCCAACGGCGCACTCAGCACCGAGAAGAGAGCACCTCAGA
GACTCATTCGCCCCCGACACGCAGGTCATGGCGAGACTTTTGTGGAAGAA
CTTGACGCCCTGGTTACAAGAGGACGTGCGCAAAGCGCTCGAACGGCCCG
ACCTAGACGTTTTCAGACGAAAGCCGTTCGTGGGGCTTCACGTCCGAAGG
GGGGACAAGGTTGGGGAGGGCGAGGCGCAAAAAGTGGAGACTAAGGAGTA
TCTGTCTGCGGCCGCGAGATTCTTCGACAATAAAGCATCTCAAGACAAAC
AAGACATCGAAGCCATTTGGGTGGCGTCTGACGACCACAAGGTCGTCGAA
GAGGTCCGCGCCATTGCTCGACAATACTTCCCTAACGTCTTGGACGAGGA
CATCGTGTGGGTATCTGGTGGGGCTCGTGGGGGCGCCGTGACTACGCACA
CAAAGTCTCAGGGCTACCAAGGGTTTGTGATGGTGTTCGCCGACCTGAAG
ATGTTGGCGGCCGGCAGCTTGTTTGTTGGCACGTACACGTCGAACGTGTC
GAGACTTGTAGCGCTGCTGAGGGAAGGCATCCACGGACACGCCAGGGACT
CGTGCATCAGCCTCGACAAAACTGAGTTCGGGCTGCAGTATTGAGCAGCA
GCAAACGCGCTACCCTGAACACTTTTTTGGAAGAACTCTTCCTTTCGGAG
ATGTTTTGATAGCTCGGCGGT
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protein sequence of EsuBft989_3a-0001

>EsuBft989_3 ID=EsuBft989_3|Name=EsuBft989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=292bp
MTRKGVSKEDLVEAPKVHWQRIRTQQAWRAQEEALKEYGVDTFGALSVRQ
QWLSKGPLLLWGIRTEERCPGHAKGAEGCEDLPTAHSAPRREHLRDSFAP
DTQVMARLLWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVG
EGEAQKVETKEYLSAAARFFDNKASQDKQDIEAIWVASDDHKVVEEVRAI
ARQYFPNVLDEDIVWVSGGARGGAVTTHTKSQGYQGFVMVFADLKMLAAG
SLFVGTYTSNVSRLVALLREGIHGHARDSCISLDKTEFGLQY
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mRNA from alignment at Scaffold_504:154533..157515+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft989_3a-0001 ID=EsuBft989_3a-0001|Name=EsuBft989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2983bp|location=Sequence derived from alignment at Scaffold_504:154533..157515+ (Ectocarpus subulatus male Bft15b)
GAGTGGAAACATTTTATGACGAGGAAGGGGGTGTCAAAGGAAGACCTCGT
GGAAGCCCCTAAGGTGCACTGGCAGCGCATCCGAACCCAGCAGGCTTGGC
GCGCACAGGAGGAGGCGCTAAAGGAATACGGGGTGGACACCTTTGGGGCC
CTGTCGGTGAGGCAGCAGTGGTTGTCGAAAGGACCGTTGCTGTTATGGGG
CATTCGTGTTCGTTGCTGGCCGTACCCTGCGCGAGGGCAGAGGCCCTAGG
ATTGTGTTTAGCTGCGAAGGGGTGTTGCGGTTGTGTCATGCACGATAGTA
GTCCCCAGGCCCTGGGTCCTCATGTAGGGTGGGCCGGACGATGTCCTCGT
TGGCCTTTCGCTGGCCGTAGGGGGCGCTCCATGTACTTTCGTTGCCGTAT
GATCCACACCCAATTAGAAATTGGGACCGACAAATGTCGCCCAGAGACCT
AAAAACGTAAATATAGACTGAGGAGCGTTGTCCCGGCCATGCAAAAGGAG
CCGAAGGTACGAACATCTAGAGGTGACATGACGACGTTGACTCGACAAGG
AAGCTGAGACTCTCCTTCCTGCATGCAGGGTGCGAAGACTTGCCAACGGC
GCACTCAGCACCGAGAAGAGAGCACCTCAGAGACTCATTCGCCCCCGACA
CGCAGGTCATGGCGAGACTTTTGTGGAAGAACTTGACGCCCTGGTTACAA
GAGGACGTGCGCAAAGCGCTCGAACGGCCCGACCTAGACGTTTTCAGACG
AAAGCCGTTCGTGGGGCTTCACGTCCGAAGGGGGGACAAGGTTGGGGAGG
GCGAGGCGCAAAAAGTGGAGACTAAGGTGGGCCGTATGCGAGGCGCGCTC
TGAACGGTGACGATGTGTGTCCAGGCTTGCAGTTGACGAATGAAGGTCAA
CGCTGCACCGTAGTGAAAACCGTAGGACAGAAACCAGTGCAAACAAGAGC
ACGCGGTTCGGATGTAGCGTTCGCGATTGAGGTTTGTCTTCGTAACTGCT
GAAAAACGGGGGGGAAGTCTTCAAGAGCTACCATTACGGTGTTTCACAGT
TTTTCCAAACAGTGACGCGGCTCTCGTTCGAACGCCTCGCGCTAAGCCAA
GAACTCGTCTACGCAACCAGAGCAATGTTGTTCATCGAGTTGAATCTGTC
AGAGGAGGACGATACAGAGGCGATTTTTTTGTGTACCTTCCAACGACGTT
TCGTATGAGCGAACAACGAGAATGCGGACGATCCAGGTGTAACCCGCCTG
GAAAAGTTCCAACGATTGCGACGGATCCAGCAGTACTGCAGAACCGACCC
GCGCTTAAGGGCTTGGTACTTACGAACTTGAGCCTCAGAATACCCAAAAC
AATATTATGAACTTGACCGTAAGAACAGGTGCTCAGTCCTACCCCACAAC
CTATATCGTCGCTGCGGGGATACATACCCCATAGACAACATAAAAACCGA
GTCTCGGCCAAGCTAAGAGGTTATTGAGTACGGACCCTGGCTGTATCGGC
ACCTACGTAAGTATCACAGTGTGCTGCCTCCGAGCAGGCTCTTTTCATGC
ACCAAGCTGCCGTCTCTTGAGGCAGGCCCTCGATCTTGCCCCTTCCTTTG
TCTACAAACAAAAATGTTCCAGGAGCATAGAAACTGACAGCTTGGATAGA
AAAATGCTGCAATTGTTTCGAATGGACCCACGACGGGATTCATTCCCCGT
TGATGTTCGCCGCAAGTATCAAAACCTCGACAGTGGGAGATCGCCAGGAT
CGCCGGAAACAAAGCAGATGTCGCTAACCTTGACACGAACACGGAAGAAA
GACAAAGATGCCAAACATCCCTTCACGGATGAGGAAACCTTCTCCAAGCT
CACCGTCCATTCGGGCAAGCGTTTACCACTCGTTTTTGGTCGCGACGTTG
ACGGCAGGAGTATCTGTCTGCGGCCGCGAGATTCTTCGACAATAAAGCAT
CTCAAGACAAACAAGACATCGAAGCCATTTGGGTGGCGTCTGACGACCAC
AAGGTCGTCGAAGAGGTCCGCGCCATTGCTCGACAATACTTCCCTAACGT
CTTGGACGAGGACATCGTGTGGGTATCTGGTGGGGCTCGTGGGGGCGCCG
TGACTACGCACACAAAGTCTCAGGTATGACATGTGACGGTTGAAACGATA
GGGTTGTGCTGAGAGCGTGACGCGCTGAGAAGGCCGGTACTGATTCATCA
CGTTTGGGTAGTGAGCGTTGAAATGAAGTCGTTTTTAACTTTGGAACATG
CCCACCACTTGTTGAGCACCAATAGTTTTCCTGGTGAAGAAAGCCCTGGT
CTGGTGCCCATTTCGGAGCCCAGTTGAGGCTGTCGAGCCTGCTTACGTCC
GGAGAGCTCATGGCTGAATGATTGGCCTTCCCCAATAGCTCGGTTGTCAA
AAAGCATAAAGCATATCGAAATTTTGGGCATGAATCAAACATGCTTGGCC
GAATCTAGCATAGTTGGCAAAAAATACGAATATAATTTATTGGTTTGGGC
ATTTTGTCGAGTCCACAATAAGAGCATATAGTCGCCTAAATAAAGGAGCA
TATGCTTTCGAACAAACGTACTGGGTGCTACAGATGGCAAAAGGCAATGA
TGGCATCTACGATGCCTTTACATCCAGCGCTCGAGGGATGGGGATATAGA
TTACCAAAAACTCTTGGCTTGTCGAGTGCGTGACGGTGGGCACCTTGTGC
GGATCCCACCCCCTTCCCGACAGGGCTACCAAGGGTTTGTGATGGTGTTC
GCCGACCTGAAGATGTTGGCGGCCGGCAGCTTGTTTGTTGGCACGTACAC
GTCGAACGTGTCGAGACTTGTAGCGCTGCTGAGGGAAGGCATCCACGGAC
ACGCCAGGGACTCGTGCATCAGCCTCGACAAAACTGAGTTCGGGCTGCAG
TATTGAGCAGCAGCAAACGCGCTACCCTGAACACTTTTTTGGAAGAACTC
TTCCTTTCGGAGATGTTTTGATAGCTCGGCGGT
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Coding sequence (CDS) from alignment at Scaffold_504:154533..157515+

>EsuBft989_3a-0001 ID=EsuBft989_3a-0001|Name=EsuBft989_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=879bp|location=Sequence derived from alignment at Scaffold_504:154533..157515+ (Ectocarpus subulatus male Bft15b)
ATGACGAGGAAGGGGGTGTCAAAGGAAGACCTCGTGGAAGCCCCTAAGGT
GCACTGGCAGCGCATCCGAACCCAGCAGGCTTGGCGCGCACAGGAGGAGG
CGCTAAAGGAATACGGGGTGGACACCTTTGGGGCCCTGTCGGTGAGGCAG
CAGTGGTTGTCGAAAGGACCGTTGCTGTTATGGGGCATTCGTACTGAGGA
GCGTTGTCCCGGCCATGCAAAAGGAGCCGAAGGGTGCGAAGACTTGCCAA
CGGCGCACTCAGCACCGAGAAGAGAGCACCTCAGAGACTCATTCGCCCCC
GACACGCAGGTCATGGCGAGACTTTTGTGGAAGAACTTGACGCCCTGGTT
ACAAGAGGACGTGCGCAAAGCGCTCGAACGGCCCGACCTAGACGTTTTCA
GACGAAAGCCGTTCGTGGGGCTTCACGTCCGAAGGGGGGACAAGGTTGGG
GAGGGCGAGGCGCAAAAAGTGGAGACTAAGGAGTATCTGTCTGCGGCCGC
GAGATTCTTCGACAATAAAGCATCTCAAGACAAACAAGACATCGAAGCCA
TTTGGGTGGCGTCTGACGACCACAAGGTCGTCGAAGAGGTCCGCGCCATT
GCTCGACAATACTTCCCTAACGTCTTGGACGAGGACATCGTGTGGGTATC
TGGTGGGGCTCGTGGGGGCGCCGTGACTACGCACACAAAGTCTCAGGGCT
ACCAAGGGTTTGTGATGGTGTTCGCCGACCTGAAGATGTTGGCGGCCGGC
AGCTTGTTTGTTGGCACGTACACGTCGAACGTGTCGAGACTTGTAGCGCT
GCTGAGGGAAGGCATCCACGGACACGCCAGGGACTCGTGCATCAGCCTCG
ACAAAACTGAGTTCGGGCTGCAGTATTGA
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