EsuBft199_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft199_17a-0001
Unique NameEsuBft199_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:933949..936760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_025006-tr
ProteomeIdEsuBft199_17
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length2217
Evalue4.74e-23
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3ANGE@33154|Opisthokonta,3C1UZ@33208|Metazoa,3DH8F@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00004,RC00043,RC00070,RC02816
KEGG koko:K01908
KEGG ReactionR00926,R01354
KEGG Pathwayko00640,ko01100,map00640,map01100
EC6.2.1.17
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft199_17aEsuBft199_17aEctocarpus subulatus male Bft15bgeneScaffold_499 933949..936760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_17a-0001EsuBft199_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 934022..936155 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_17a-0001-exonEsuBft199_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 933949..934189 -
EsuBft199_17a-0001-exonagat-exon-107929Ectocarpus subulatus male Bft15bexonScaffold_499 934366..935289 -
EsuBft199_17a-0001-exonagat-exon-107931Ectocarpus subulatus male Bft15bexonScaffold_499 935512..935715 -
EsuBft199_17a-0001-exonagat-exon-107930Ectocarpus subulatus male Bft15bexonScaffold_499 935913..936760 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_17a-0001-exonagat-three_prime_utr-7574Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 933949..934021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_17a-0001-cdsEsuBft199_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 934022..934189 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft199_17a-0001-exonagat-five_prime_utr-4918Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 936156..936760 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft199_17a-0001 ID=EsuBft199_17a-0001|Name=EsuBft199_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2217bp|location=Sequence derived from alignment at Scaffold_499:933949..936760- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCTGCCCCCTCGGCCTGCTCCCCGACCGGGGCCGAAATCGACCTAGTGA
GTCCCTCGCGGGCGAACCAGGACACAACAGATAGTAGGCGGGTGGTGTCC
CAAGGTGCAACTCCCCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCAC
AGACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCAGT
CATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGAAAGCGTGG
CCCACGAAGCTGGAGGAGTAGAGTGATTCGCGAACACCACGTCAGTAAGC
ACCGCTCGCGGGAGAAGGGAGATAACCGCGGGCACCGCGGGGAGGGAGTG
CTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGGGCTCTGCAGAG
ATGGATTGATGCGAGGAAACTCGCCGCCCGGAAAATACGGAAGAAAGCAC
ACCCGCAACGCGAGGCGGACCGAGAGAGACACGAGGCAGCAGCGGCCGTC
AAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCAC
GTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGTCACA
ACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATA
GAACTTCAGGAGACCCAGCGAGACGGGCAAGGTTCAATTGCACACGACGG
GTACGTGATCATCTGGAGTGGCGCCCGTGCTGGTACCAAGGACAAGTGGG
GCGTAAACGGTGTGGGCATAGCGATCAAGGCGGCCATGTGGGCGAGTGTG
GGCGAGGAAGGTAGGACGGTAGAGTGCATTAGCCCGAGGCTGATGAAGGT
TATGGGCGCGTACGGACGCGACATTATGAACAACAACGGCGAACGACTCC
TTGGACTGGCATCAGACAACCAACTCTTCCTGACCAACACCTACTTCCGG
ACACCGAAAGGAGGAGTGCAGCATACGTTCCAGAGCTCCAACAAGGGGAA
GGAGAAGCACCGCCTCGACTTCATCCTCATGCGACAGACGGACCGGCGTC
TCCGGAAGCAGCCGGATCCGTATCGACCTCGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGTGGGGCCTCAAAAAACAGCGCCTTCCAGG
CGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCG
AGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGTTCGA
GAAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGA
TGATCGACGTCGAAGGTAAGAGGCCGTTTACCTCCCAGAACATCAAGGAC
GAGGACGGTAAGGTCCTTCGGGACCCCACGCTTACCCGCCAGCGGTGGGC
GCGGTGGTTCCACAAGCTCCTTAACACCAAGTCGCCGACCATCGACCTGC
ATGCGACCGACAGAGTCAAGCAGTGGCCCACGTGCGTTCCGCTCGACGAC
ATCCCGTCTCTATTCGAGGTTGAGGAGGCGGTGCGGGGAATGGCCAACAG
GAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCC
TGGACGGAGACCGAGGTCTCCTCCGCGAATTCCACGCCATTGTCGTGGAC
GTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAA
AGTGCTGTTCAAGAAGGGGAACACGATGGAGTGCGGCAACTACCGGGGCA
TCTCTCTCGTCGCACACGCCGGCAAGTACTCGGAATGGTTCGACGTGGGC
CAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTT
CTTTGCCGCGATGCTCATGGTCGCCGTGACCGAGTTCGACAAGGACCCCA
AGGTGACGGTGGACATGGTCAAGATCGGGACACAAGTGGAGTAATAGGCA
AGAAGGGCAGGTCGGCGGGGAAGAGGACGACGGTGGTGATGGACGCGGAG
GCCTTGTGGGCCATGCT
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protein sequence of EsuBft199_17a-0001

>EsuBft199_17 ID=EsuBft199_17|Name=EsuBft199_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=512bp
MTVMQICSATGCDVIELQETQRDGQGSIAHDGYVIIWSGARAGTKDKWGV
NGVGIAIKAAMWASVGEEGRTVECISPRLMKVMGAYGRDIMNNNGERLLG
LASDNQLFLTNTYFRTPKGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLR
KQPDPYRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGASKNSAFQAT
LKAMLKAARKKRSIARWRALETFFEGYVRQFEKKSREGDQAGFYRHLKMI
DVEGKRPFTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHA
TDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLD
GDRGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGNTMECGNYRGIS
LVAHAGKYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVTEFDKDPKV
TVDMVKIGTQVE
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mRNA from alignment at Scaffold_499:933949..936760-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft199_17a-0001 ID=EsuBft199_17a-0001|Name=EsuBft199_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2812bp|location=Sequence derived from alignment at Scaffold_499:933949..936760- (Ectocarpus subulatus male Bft15b)
TCCTGCCCCCTCGGCCTGCTCCCCGACCGGGGCCGAAATCGACCTAGTGA
GTCCCTCGCGGGCGAACCAGGACACAACAGATAGTAGGCGGGTGGTGTCC
CAAGGTGCAACTCCCCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCAC
AGACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCAGT
CATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGAAAGCGTGG
CCCACGAAGCTGGAGGAGTAGAGTGATTCGCGAACACCACGTCAGTAAGC
ACCGCTCGCGGGAGAAGGGAGATAACCGCGGGCACCGCGGGGAGGGAGTG
CTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGGGCTCTGCAGAG
ATGGATTGATGCGAGGAAACTCGCCGCCCGGAAAATACGGAAGAAAGCAC
ACCCGCAACGCGAGGCGGACCGAGAGAGACACGAGGCAGCAGCGGCCGTC
AAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCAC
GTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGTCACA
ACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATA
GAACTTCAGGAGACCCAGCGAGACGGGCAAGGTTCAATTGCACACGACGG
GTACGTGATCATCTGGAGTGGCGCCCGTGCTGGTACCAAGGACAAGTGGG
GCGTAAACGGTGTGGGCATAGCGATCAAGGCGGCCATGTGGGCGAGTGTG
GGCGAGGAAGGTAGGACGGTAGAGTGCATTAGCCCGAGGCTGATGAAGGT
GCGTCTACAAATTGGCCGCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCC
AACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAGGTTAT
GGGCGCGTACGGACGCGACATTATGAACAACAACGGCGAACGACTCCTTG
GACTGGCATCAGACAACCAACTCTTCCTGACCAACACCTACTTCCGGACA
CCGAAAGGAGGAGTGCAGCATACGTTCCAGAGCTCCAACAAGGGGAAGGA
GAAGCACCGCCTCGACTTCATCCTCATGCGACAGACGGACCGGCGTCTCG
TACGTAATGCCTCCGTCAAACGTGTCGATTTCAAGGACTCTGACCACAAC
CTGGTGCATACGACTGTCCGCTCCCCCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCAAACGTGCCGACTTCAACGGCTCTGAC
CACAACCTCGTGCTTACGACTGTCCGTCTCCCCTCCCGTGTCGCACCCAA
CCGACGAGTGCGAGGGAACAGCGGAAGCAGCCGGATCCGTATCGACCTCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGGGCCTCA
AAAAACAGCGCCTTCCAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCG
GAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGAGG
GCTATGTACGGCAGTTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGGGT
TTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGCCGTTTAC
CTCCCAGAACATCAAGGACGAGGACGGTAAGGTCCTTCGGGACCCCACGC
TTACCCGCCAGCGGTGGGCGCGGTGGTTCCACAAGCTCCTTAACACCAAG
TCGCCGACCATCGACCTGCATGCGACCGACAGAGTCAAGCAGTGGCCCAC
GTGCGTTCCGCTCGACGACATCCCGTCTCTATTCGAGGTTGAGGAGGCGG
TGCGGGGAATGGCCAACAGGAAGGCCGTCGGGCCGGACGACCTACCGGCT
GAGCTGATCAAGCTTTTCCTGGACGGAGACCGAGGTCTCCTCCGCGAATT
CCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACAGCAGT
GGAAGGATGCCACCATCAAAGTGCTGTTCAAGAAGGGGAACACGATGGAG
TGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCT
GCTTAACGTCGACGCTACACGACTGAGTCACTACTGCGAGCGAGAGGGCA
TCCTCCCAGAGGAGCAGAGCGGTTTCCGCCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGC
GTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGG
CCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTG
CCGCGATGCTCATGGTCGCCGTGACCGAGTTCGACAAGGACCCCAAGGTG
ACGGTGGACATGGTCAAGATCGGGACACAAGTGGAGTAATAGGCAAGAAG
GGCAGGTCGGCGGGGAAGAGGACGACGGTGGTGATGGACGCGGAGGCCTT
GTGGGCCATGCT
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Coding sequence (CDS) from alignment at Scaffold_499:933949..936760-

>EsuBft199_17a-0001 ID=EsuBft199_17a-0001|Name=EsuBft199_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1539bp|location=Sequence derived from alignment at Scaffold_499:933949..936760- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGAACT
TCAGGAGACCCAGCGAGACGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGTACCAAGGACAAGTGGGGCGTA
AACGGTGTGGGCATAGCGATCAAGGCGGCCATGTGGGCGAGTGTGGGCGA
GGAAGGTAGGACGGTAGAGTGCATTAGCCCGAGGCTGATGAAGGTTATGG
GCGCGTACGGACGCGACATTATGAACAACAACGGCGAACGACTCCTTGGA
CTGGCATCAGACAACCAACTCTTCCTGACCAACACCTACTTCCGGACACC
GAAAGGAGGAGTGCAGCATACGTTCCAGAGCTCCAACAAGGGGAAGGAGA
AGCACCGCCTCGACTTCATCCTCATGCGACAGACGGACCGGCGTCTCCGG
AAGCAGCCGGATCCGTATCGACCTCGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCGTGGGGCCTCAAAAAACAGCGCCTTCCAGGCGACC
CTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTG
GAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGTTCGAGAAGA
AGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATC
GACGTCGAAGGTAAGAGGCCGTTTACCTCCCAGAACATCAAGGACGAGGA
CGGTAAGGTCCTTCGGGACCCCACGCTTACCCGCCAGCGGTGGGCGCGGT
GGTTCCACAAGCTCCTTAACACCAAGTCGCCGACCATCGACCTGCATGCG
ACCGACAGAGTCAAGCAGTGGCCCACGTGCGTTCCGCTCGACGACATCCC
GTCTCTATTCGAGGTTGAGGAGGCGGTGCGGGGAATGGCCAACAGGAAGG
CCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGAC
GGAGACCGAGGTCTCCTCCGCGAATTCCACGCCATTGTCGTGGACGTGTG
GCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGC
TGTTCAAGAAGGGGAACACGATGGAGTGCGGCAACTACCGGGGCATCTCT
CTCGTCGCACACGCCGGCAAGTACTCGGAATGGTTCGACGTGGGCCAAGG
CCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTG
CCGCGATGCTCATGGTCGCCGTGACCGAGTTCGACAAGGACCCCAAGGTG
ACGGTGGACATGGTCAAGATCGGGACACAAGTGGAGTAA
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