EsuBft2361_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2361_5a-0001
Unique NameEsuBft2361_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:366984..367672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV19280-PA
ProteomeIdEsuBft2361_5
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 412 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length689
Hectar predicted targeting categoryother localisation
Evalue2.79e-38
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_5aEsuBft2361_5aEctocarpus subulatus male Bft15bgeneScaffold_499 366984..367672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_5a-0001-exonEsuBft2361_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 366984..367672 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_5a-0001-exonagat-five_prime_utr-6104Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 366984..367015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_5a-0001-cdsEsuBft2361_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 367016..367561 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_5a-0001-exonagat-three_prime_utr-9522Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 367562..367672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2361_5a-0001EsuBft2361_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 367016..367561 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2361_5a-0001 ID=EsuBft2361_5a-0001|Name=EsuBft2361_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=689bp|location=Sequence derived from alignment at Scaffold_499:366984..367672+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTTCGGCGCAGCATCACAGGAATTCCTCGGCATGATCATCGACAGCACG
GGCCTGTACCCTGCTCCGTCTAAGCTAGATGCAATCGCACGCATGCCTCG
CCCACACACCGTAGAAGCGCTGCGCACGTTTTTGGGTCTTGCCGGCTGCG
TGCGTCAGTTTTTACCCAACTTCAGTTTGACTGCCGCTCCGCTCACCAAC
ATCCTGCGCAACAAAGCCTTCGCTTCGAAACGTGCACGCAAGCTTCCTAT
CCCTTGGCCAGCAGCTGAGGAAGACGCCTTCCAGTCTTTACGAGAAACGT
TGGCTTCCCCGAATATTCTCGCTTTCCCTGACCTGTTCGAACTACACACA
GATGCTAGCACGCTGGGTGTAGGAGCTTCGCTCATGCAGACAATCGATGG
TGTCACCAGAGCGGTGGCGTTCGCGAGCCACCGGTTTTCACAAATCGATG
CTAGACGCGGGCCCACGGAACGAGAATGCATGGGGGTCCTGTGGGCGGTA
GACCACTTCCGGCCGTACCTAGCGGGTAGACGGTTCAAGCTGGTGACAGA
CTGTTCCGCCCTCACATGGTTGTTCTGAAGCCGTGAACTCTGCCCCAAGC
TGCACAGGTGGGCGCTGCGGCTGATGGAGTACGACATGGAGCTGGAATGG
AAGGCGGGAGTAGAGCGCGTAGTGCCCAATGCTTTGTCC
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protein sequence of EsuBft2361_5a-0001

>EsuBft2361_5 ID=EsuBft2361_5|Name=EsuBft2361_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MIIDSTGLYPAPSKLDAIARMPRPHTVEALRTFLGLAGCVRQFLPNFSLT
AAPLTNILRNKAFASKRARKLPIPWPAAEEDAFQSLRETLASPNILAFPD
LFELHTDASTLGVGASLMQTIDGVTRAVAFASHRFSQIDARRGPTERECM
GVLWAVDHFRPYLAGRRFKLVTDCSALTWLF
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mRNA from alignment at Scaffold_499:366984..367672+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2361_5a-0001 ID=EsuBft2361_5a-0001|Name=EsuBft2361_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=689bp|location=Sequence derived from alignment at Scaffold_499:366984..367672+ (Ectocarpus subulatus male Bft15b)
TTTTCGGCGCAGCATCACAGGAATTCCTCGGCATGATCATCGACAGCACG
GGCCTGTACCCTGCTCCGTCTAAGCTAGATGCAATCGCACGCATGCCTCG
CCCACACACCGTAGAAGCGCTGCGCACGTTTTTGGGTCTTGCCGGCTGCG
TGCGTCAGTTTTTACCCAACTTCAGTTTGACTGCCGCTCCGCTCACCAAC
ATCCTGCGCAACAAAGCCTTCGCTTCGAAACGTGCACGCAAGCTTCCTAT
CCCTTGGCCAGCAGCTGAGGAAGACGCCTTCCAGTCTTTACGAGAAACGT
TGGCTTCCCCGAATATTCTCGCTTTCCCTGACCTGTTCGAACTACACACA
GATGCTAGCACGCTGGGTGTAGGAGCTTCGCTCATGCAGACAATCGATGG
TGTCACCAGAGCGGTGGCGTTCGCGAGCCACCGGTTTTCACAAATCGATG
CTAGACGCGGGCCCACGGAACGAGAATGCATGGGGGTCCTGTGGGCGGTA
GACCACTTCCGGCCGTACCTAGCGGGTAGACGGTTCAAGCTGGTGACAGA
CTGTTCCGCCCTCACATGGTTGTTCTGAAGCCGTGAACTCTGCCCCAAGC
TGCACAGGTGGGCGCTGCGGCTGATGGAGTACGACATGGAGCTGGAATGG
AAGGCGGGAGTAGAGCGCGTAGTGCCCAATGCTTTGTCC
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Coding sequence (CDS) from alignment at Scaffold_499:366984..367672+

>EsuBft2361_5a-0001 ID=EsuBft2361_5a-0001|Name=EsuBft2361_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_499:366984..367672+ (Ectocarpus subulatus male Bft15b)
ATGATCATCGACAGCACGGGCCTGTACCCTGCTCCGTCTAAGCTAGATGC
AATCGCACGCATGCCTCGCCCACACACCGTAGAAGCGCTGCGCACGTTTT
TGGGTCTTGCCGGCTGCGTGCGTCAGTTTTTACCCAACTTCAGTTTGACT
GCCGCTCCGCTCACCAACATCCTGCGCAACAAAGCCTTCGCTTCGAAACG
TGCACGCAAGCTTCCTATCCCTTGGCCAGCAGCTGAGGAAGACGCCTTCC
AGTCTTTACGAGAAACGTTGGCTTCCCCGAATATTCTCGCTTTCCCTGAC
CTGTTCGAACTACACACAGATGCTAGCACGCTGGGTGTAGGAGCTTCGCT
CATGCAGACAATCGATGGTGTCACCAGAGCGGTGGCGTTCGCGAGCCACC
GGTTTTCACAAATCGATGCTAGACGCGGGCCCACGGAACGAGAATGCATG
GGGGTCCTGTGGGCGGTAGACCACTTCCGGCCGTACCTAGCGGGTAGACG
GTTCAAGCTGGTGACAGACTGTTCCGCCCTCACATGGTTGTTCTGA
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