EsuBft2361_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2361_4a-0001
Unique Name	EsuBft2361_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:365800..366982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	102107.XP_008223402.1
ProteomeId	EsuBft2361_4
Protein domains	SSF56672
Protein domains	PTHR10178
Protein domains	G3DSA
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1183
Hectar predicted targeting category	other localisation
Evalue	6.47e-18
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37RRH@33090\|Viridiplantae,3G8MV@35493\|Streptophyta,4JM10@91835\|fabids
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transposition, RNA-mediated
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2361_4a	EsuBft2361_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 365800..366982 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2361_4a-0001-exon	EsuBft2361_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 365800..366982 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2361_4a-0001-exon	agat-five_prime_utr-6103	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_499 365800..366465 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2361_4a-0001-cds	EsuBft2361_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 366466..366801 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2361_4a-0001-exon	agat-three_prime_utr-9521	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 366802..366982 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2361_4a-0001	EsuBft2361_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 366466..366801 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:365800..366982+
coding sequence from alignment at Scaffold_499:365800..366982+

spliced messenger RNA

>EsuBft2361_4a-0001 ID=EsuBft2361_4a-0001|Name=EsuBft2361_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1183bp|location=Sequence derived from alignment at Scaffold_499:365800..366982+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGCCCAGCTACTAGGACGTGGTGTGGGAGGACGACACCTCCTTCGAGT
GGGACGTGCGACAAGTGCCGGAGACCACTGTCGTCGAGGGTTTCACCACT
CGCGCGGTGGAATCTGCGGCTGTGGGGCCACAACCGCAGGACAGGCAGCT
AGTGATGGTCTTGCCGACCGAGCGGTTTGATTTAGAGCAGGGAGCTGTAG
TGGGAGTAACTCGTGCGGTAATGTGGTGGGTTCCAGGGTTGCCTGTTTAC
TGCAAGCTGGTGAACTGTAATAAGGAGAAGGTGGCAGTCGAGGGTAGCCG
GGTGATAGCTTGCATGGTAGCACTCAATGTTTGCGACAAGCCGGCTTTCG
ATTCGCTGTTGACACCGCCCCCTCTGCTGCCGACCCACCCCTGCCTCCCC
GTGGACCGCGCGCCCCGAGCCCGTCCCCACCTAATGGGACATCCATCCCG
CGTGTTCGCGTAGAGGACGCCAACCTGGAGACGCTGGGGTCGCTCAAGAA
GCAGCTCGTCAACGCCCTCCCAGCGTTCATCGAGGGCGGCCTGTTTCCGA
TCGACCCGAAGCGAGTGCCGGCTTGCATCAACGGTGAGGTTGAGCTTCCT
CTGATCAACGAGTTTTGCACACCTTTCGCAGCCAAGCAAAGGCGTTTCTC
TCCAGAAGAACGACGCATGATCAGGGCAGAGATTCAGCAGTTGGTAGACC
GAGGAGTGATCCGTCAATCCATGTCTCCGTGGGCTGCCCAGTGCTTGTGC
GTTGAGGAGGATGGTAAGCTGCGACTGTGCATCGACTGGCGTGAACTCAA
CATACTCTTGGTCTCGGATGGTGGGGGTGTGGGTGACATGCAGACGATAT
TCGACGGGTTGAAGGACAAGAAGTATTGCATTCAGCTAGACCTCGCCTCC
GGTTTTCACCAGATGGAAATCGCCGAAAAGACCGTTCCAAGACGGCCTTT
CGAGATGCGGATGGTATGCTTTGGGACTTCACTCGCACGGGTTTTGGCCT
GACGGTGCTTCGGCGGCCTTCACTCTTAGAGTAAAGTCGGCTTTGGGGCA
CCTATCGGGCGTGTTTTGCTGACTTGACGACATTCTCATCGCTAGCGACA
CATGGGAAGAACATCTGGCCACTCTGGCGCTCGTTCTGAACCGCCTTCTG
GCTGCGGGGCTGTCCGTGAACTTCGCGAAGAGC

protein sequence of EsuBft2361_4a-0001

>EsuBft2361_4 ID=EsuBft2361_4|Name=EsuBft2361_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MIRAEIQQLVDRGVIRQSMSPWAAQCLCVEEDGKLRLCIDWRELNILLVS
DGGGVGDMQTIFDGLKDKKYCIQLDLASGFHQMEIAEKTVPRRPFEMRMV
CFGTSLARVLA

mRNA from alignment at Scaffold_499:365800..366982+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2361_4a-0001 ID=EsuBft2361_4a-0001|Name=EsuBft2361_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1183bp|location=Sequence derived from alignment at Scaffold_499:365800..366982+ (Ectocarpus subulatus male Bft15b)
TGTGCCCAGCTACTAGGACGTGGTGTGGGAGGACGACACCTCCTTCGAGT
GGGACGTGCGACAAGTGCCGGAGACCACTGTCGTCGAGGGTTTCACCACT
CGCGCGGTGGAATCTGCGGCTGTGGGGCCACAACCGCAGGACAGGCAGCT
AGTGATGGTCTTGCCGACCGAGCGGTTTGATTTAGAGCAGGGAGCTGTAG
TGGGAGTAACTCGTGCGGTAATGTGGTGGGTTCCAGGGTTGCCTGTTTAC
TGCAAGCTGGTGAACTGTAATAAGGAGAAGGTGGCAGTCGAGGGTAGCCG
GGTGATAGCTTGCATGGTAGCACTCAATGTTTGCGACAAGCCGGCTTTCG
ATTCGCTGTTGACACCGCCCCCTCTGCTGCCGACCCACCCCTGCCTCCCC
GTGGACCGCGCGCCCCGAGCCCGTCCCCACCTAATGGGACATCCATCCCG
CGTGTTCGCGTAGAGGACGCCAACCTGGAGACGCTGGGGTCGCTCAAGAA
GCAGCTCGTCAACGCCCTCCCAGCGTTCATCGAGGGCGGCCTGTTTCCGA
TCGACCCGAAGCGAGTGCCGGCTTGCATCAACGGTGAGGTTGAGCTTCCT
CTGATCAACGAGTTTTGCACACCTTTCGCAGCCAAGCAAAGGCGTTTCTC
TCCAGAAGAACGACGCATGATCAGGGCAGAGATTCAGCAGTTGGTAGACC
GAGGAGTGATCCGTCAATCCATGTCTCCGTGGGCTGCCCAGTGCTTGTGC
GTTGAGGAGGATGGTAAGCTGCGACTGTGCATCGACTGGCGTGAACTCAA
CATACTCTTGGTCTCGGATGGTGGGGGTGTGGGTGACATGCAGACGATAT
TCGACGGGTTGAAGGACAAGAAGTATTGCATTCAGCTAGACCTCGCCTCC
GGTTTTCACCAGATGGAAATCGCCGAAAAGACCGTTCCAAGACGGCCTTT
CGAGATGCGGATGGTATGCTTTGGGACTTCACTCGCACGGGTTTTGGCCT
GACGGTGCTTCGGCGGCCTTCACTCTTAGAGTAAAGTCGGCTTTGGGGCA
CCTATCGGGCGTGTTTTGCTGACTTGACGACATTCTCATCGCTAGCGACA
CATGGGAAGAACATCTGGCCACTCTGGCGCTCGTTCTGAACCGCCTTCTG
GCTGCGGGGCTGTCCGTGAACTTCGCGAAGAGC

Coding sequence (CDS) from alignment at Scaffold_499:365800..366982+

>EsuBft2361_4a-0001 ID=EsuBft2361_4a-0001|Name=EsuBft2361_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_499:365800..366982+ (Ectocarpus subulatus male Bft15b)
ATGATCAGGGCAGAGATTCAGCAGTTGGTAGACCGAGGAGTGATCCGTCA
ATCCATGTCTCCGTGGGCTGCCCAGTGCTTGTGCGTTGAGGAGGATGGTA
AGCTGCGACTGTGCATCGACTGGCGTGAACTCAACATACTCTTGGTCTCG
GATGGTGGGGGTGTGGGTGACATGCAGACGATATTCGACGGGTTGAAGGA
CAAGAAGTATTGCATTCAGCTAGACCTCGCCTCCGGTTTTCACCAGATGG
AAATCGCCGAAAAGACCGTTCCAAGACGGCCTTTCGAGATGCGGATGGTA
TGCTTTGGGACTTCACTCGCACGGGTTTTGGCCTGA