EsuBft886_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft886_2a-0001
Unique Name	EsuBft886_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_493	contig	Scaffold_493:92876..96136 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft886_2
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	IPR007889
Protein domains	IPR009057
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	PTHR19303
Protein domains	IPR004875
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	jerky protein homolog-like os:mus musculus gn:jrkl pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	2439
Hectar predicted targeting category	other localisation
Evalue	4.21e-53
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003677

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft886_2a	EsuBft886_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_493 92876..96136 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_2a-0001	EsuBft886_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_493 92876..94823 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_2a-0001-exon	agat-exon-67641	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 92876..93389 +
EsuBft886_2a-0001-exon	EsuBft886_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 94036..95882 +
EsuBft886_2a-0001-exon	agat-exon-67642	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 96059..96136 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_2a-0001-cds	EsuBft886_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_493 92876..93389 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_2a-0001-exon	agat-three_prime_utr-22695	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_493 94824..95882 +
EsuBft886_2a-0001-exon	agat-three_prime_utr-22696	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_493 96059..96136 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_493:92876..96136+
coding sequence from alignment at Scaffold_493:92876..96136+

spliced messenger RNA

>EsuBft886_2a-0001 ID=EsuBft886_2a-0001|Name=EsuBft886_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2439bp|location=Sequence derived from alignment at Scaffold_493:92876..96136+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGGTCTAAGGTGGACCCAGAGCAGGCGCAGAAGGCCATCGAGGC
TGTCCGCAGCGGCGCAATGTCTCTCCGGGCTGCTGCACAGGCCTATGGCG
TGAACAAGCGCTCTCTCTCTCGCCGGCTGACCGGTGATGAAAGCATGGAT
GCAAAGGTTGGTCCAAGGACTGTACTCACAGTCGAGGAGGAAAGTTTTGT
TGAAGATGCACTGCTGTATGCTGCTCGTCACTTCATCGGGATCGACCGGA
CCGCGCTGCAAGAACATGTGCGCCAGCTGTGCAATGACGGTCGCGATATC
CCGTGGGATGCAGCAGTCGGCCCGGGGCGATCATGGCTAGACGGCTTCTT
CAAGAGGCATCCTGCGCTATCGGAACGCAGCGCCCGCATCTACGAGGCCA
ACAGAATCATGAGTGACGACGAGACTCGCCTGCAGACGTTCTACAAGGAC
TTTGGCGAGTTCGTTGACAAGGAAAAGATCCCTGCCGATCACCTGTGGAA
CACAGATGAGACAGGTAGCACTTCACAAGGCACCAAGACAATGAAGGTGA
TTACGGAGAGCGGACAGAAAGTGGGTGGAGCGATGCGTTCAAACTCGAGA
GAAAACGTGACGGTGGTGGTCACCATCAGCGCGGCGGGTGCCACCCTCGC
CCCGTGGATCATCTACAAAGGGCAGCGTCTGCAAGCGGACTGGGTCAAAG
GCAGAAACGGCCCTCCGAACGCGAGACTGGCAGTCATCGATTCCTCGTTC
ATGCAGGGGACCGTATTCGTCAACTACATTCGCGACTTTCACCGGCAGCT
TCTAGACCGCGGCTTGATCAACGGCACGCCACACGTGCTCGTGCTTGATG
GCCACGCCTCGCATGTTACCTACGAAGTTGTAAAATTGGCCAGGGACCTA
AACATCGTCCTTTACCAGATACCGTCCCACTCGTCTCATGTTGTTCAGCC
CTTGGACGTCGGGTCGTTCGGGTCATTCAAGCGGGAAATCACCAAGGTTC
TCTCGGCCTTCCCGGCACGAAACGGCGGAAGGGTGCCCGCGAAGAGCGAC
ATGTTGGGCATTCTTGGGGATGCTTGGTTGCGGAGCTTTTCCGAGGAACG
GAACACATCATCCTTTGCAGGGGCAGGCCTTTGGCCGGTGGACGGGGAGC
GGGCGATGGGTCGACTTCAAGGTGTAGGGAAGAGGAAGGAACGATCAGGT
GCCCGCCCGCCCGTTGAGGACATCACAGGGGCGATTTCCGACAAGCATCT
TGCCGACAACCTCGGCCCACGAACGGTTCGCGAGCTGCAGCAAAAGGGCT
AGTGCGTCAAGGGCATCCTTATCAACACGGTCATGCTCGGAGCCTTCGTC
AAGGCGAAAAAGAAGCAGAAGAGGCTCGCCATCACCCGCAAGTCGCAAGG
TCTCCCGGAAGGAGGGGTAATCACGTGCGATGACGTCATGCAAAAATACC
TCGAAGACGAACGCCAGAAGGTGGAGGCCGAGGAAGCTCTGAGAGAAAAA
AGAATGGCACGGGAGATCAAGAGGGTAGCGAGGGAGGATGCGAGCTTGGA
ACAGGGGGCAAACCGCGCAGGGCGTGGGCATGGGCGGGGAGGAGGGCGAG
GCGACACAGGGGGTGAAGGCTCTAGTGGGCGGGGACAGGGACCGGACGGA
GGCAGAGGGGGGCGGGGGCGGGGGCTTGAAGGAGGTCAGGGGGGGCGCGG
GCAGGGGGGGGAGGAAGAGAGAGGGCGCCGGGCTGTTGTTGGTCGTGGGC
GTGTAGTTGGCCGAACGGCGGGCGGTAGAGGGGCGGTGGGTGGGCGGGGA
GTAGAAAGTCGACCCGAGGCGGCGGCCGGCGGGCGAGAGGGAGGTCAGGG
GCAAGGGCGGGGGCGAAGAGAAGGAAGGGGCGGGCGTGGGAGGGGCGGCG
GGTGGGGTGGCGTTCGTGATCAAGTGGGGGGGGGGGTTGTGGCGAATGCC
ACTGGGCGGGGTGCTGGTCGTGGTCGTGTGGTCGGAGGGGTAGTGGGGAA
TGCCGGCGTATCCAGGTCAGGGCGAACGCTGACGCCGGCACGCGTAGTCG
ACGTGTCGGTTTTTCTGTACCGATCCGAACTCAACCTAGTTTGATTCCAA
ATCGGTTGAAAGCGCCCTTGGAATTGGCAAGGAGTCAGCAATCAAGTGGT
TGGAGTTTTTTTTGGAGCGTCGAGCAGTTCTGCGATTGTACGAGGCCACG
CTGTACCGTTCTAGCGGTTTGAATCAGGTTCTGACTGGAAAATCCGGGGA
TGTGACCACTCTGTCCCCGGTTGGGGACTCCTCCCCCACGTTTGAATTCA
CTTGCTCCTTGCTTTAGTGTCGAGGTCTGTGTCAAACGGCGAATCATGGG
GTGAAAGCGAAGCGATGCAGCGTCGTGCATTTCGGGACTGGGGGTTGCCG
TAGACGGACGCGAACACCGGTAAGTGCGCCCGCTTCTTA

protein sequence of EsuBft886_2a-0001

>EsuBft886_2 ID=EsuBft886_2|Name=EsuBft886_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMD
AKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDI
PWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKD
FGEFVDKEKIPADHLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSR
ENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSF
MQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDL
NIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSD
MLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGVGKRKERSG
ARPPVEDITGAISDKHLADNLGPRTVRELQQKG

mRNA from alignment at Scaffold_493:92876..96136+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft886_2a-0001 ID=EsuBft886_2a-0001|Name=EsuBft886_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3261bp|location=Sequence derived from alignment at Scaffold_493:92876..96136+ (Ectocarpus subulatus male Bft15b)
ATGGTCAGGTCTAAGGTGGACCCAGAGCAGGCGCAGAAGGCCATCGAGGC
TGTCCGCAGCGGCGCAATGTCTCTCCGGGCTGCTGCACAGGCCTATGGCG
TGAACAAGCGCTCTCTCTCTCGCCGGCTGACCGGTGATGAAAGCATGGAT
GCAAAGGTTGGTCCAAGGACTGTACTCACAGTCGAGGAGGAAAGTTTTGT
TGAAGATGCACTGCTGTATGCTGCTCGTCACTTCATCGGGATCGACCGGA
CCGCGCTGCAAGAACATGTGCGCCAGCTGTGCAATGACGGTCGCGATATC
CCGTGGGATGCAGCAGTCGGCCCGGGGCGATCATGGCTAGACGGCTTCTT
CAAGAGGCATCCTGCGCTATCGGAACGCAGCGCCCGCATCTACGAGGCCA
ACAGAATCATGAGTGACGACGAGACTCGCCTGCAGACGTTCTACAAGGAC
TTTGGCGAGTTCGTTGACAAGGAAAAGATCCCTGCCGATCACCTGTGGAA
CACAGATGAGACAGGTGAGGTCCATATAGAAAGGTGTTGCTGATGGATCT
ACGCAGTAGGCAAGGGCTACAGCAGTGCTGTAGTGCGCGGTGCAGCTGCG
CGGCAACTTGCTAGCAGCAGGCGGAGTTGTGCCGATATTTTTTTCAGTGT
AGATCGTTGGATCCGCCCTCTGCAACCCACACACCCCTGCAAGATCTATT
CCACTACCGCGGTAGACTAGACTAGACAAAAACGCACGGTTGACATACAC
TACAGTAGTACATGCCCCCTCCCCTTTCCGCGGCGCTCACTGTGTTACCG
TACGCTCGAAGTCACTCGAGTTATAGAGGGACGGCGGCATGAGGTGTATG
TTGGGGATGAAACAGAAACCTAGACGGGTTTGGCTGTGTGTCGCACTCTA
GCGCAAGCGTTACTGTGTTCGTATGCGGCTGCGCCTCTTTTCTGATGTGA
TTATTCTCTATCGCCGACAGATGTAGCCGTAGTCTAGTCTCTTCGCCCTT
TGCCGATACCCCCTGGCTTACAATGCTGTCGTCCGCCTCCTCTGTAGAAA
TAGTACACAGACCTAGAGAGAGCGGTACCAGGTGCGCCCCGACCACCTTC
CGTACGCTCAACGCCACCTCGGCTACGTACCTTTCCTGGTCCAACATCTC
TGTTTTGCAGGTAGCACTTCACAAGGCACCAAGACAATGAAGGTGATTAC
GGAGAGCGGACAGAAAGTGGGTGGAGCGATGCGTTCAAACTCGAGAGAAA
ACGTGACGGTGGTGGTCACCATCAGCGCGGCGGGTGCCACCCTCGCCCCG
TGGATCATCTACAAAGGGCAGCGTCTGCAAGCGGACTGGGTCAAAGGCAG
AAACGGCCCTCCGAACGCGAGACTGGCAGTCATCGATTCCTCGTTCATGC
AGGGGACCGTATTCGTCAACTACATTCGCGACTTTCACCGGCAGCTTCTA
GACCGCGGCTTGATCAACGGCACGCCACACGTGCTCGTGCTTGATGGCCA
CGCCTCGCATGTTACCTACGAAGTTGTAAAATTGGCCAGGGACCTAAACA
TCGTCCTTTACCAGATACCGTCCCACTCGTCTCATGTTGTTCAGCCCTTG
GACGTCGGGTCGTTCGGGTCATTCAAGCGGGAAATCACCAAGGTTCTCTC
GGCCTTCCCGGCACGAAACGGCGGAAGGGTGCCCGCGAAGAGCGACATGT
TGGGCATTCTTGGGGATGCTTGGTTGCGGAGCTTTTCCGAGGAACGGAAC
ACATCATCCTTTGCAGGGGCAGGCCTTTGGCCGGTGGACGGGGAGCGGGC
GATGGGTCGACTTCAAGGTGTAGGGAAGAGGAAGGAACGATCAGGTGCCC
GCCCGCCCGTTGAGGACATCACAGGGGCGATTTCCGACAAGCATCTTGCC
GACAACCTCGGCCCACGAACGGTTCGCGAGCTGCAGCAAAAGGGCTAGTG
CGTCAAGGGCATCCTTATCAACACGGTCATGCTCGGAGCCTTCGTCAAGG
CGAAAAAGAAGCAGAAGAGGCTCGCCATCACCCGCAAGTCGCAAGGTCTC
CCGGAAGGAGGGGTAATCACGTGCGATGACGTCATGCAAAAATACCTCGA
AGACGAACGCCAGAAGGTGGAGGCCGAGGAAGCTCTGAGAGAAAAAAGAA
TGGCACGGGAGATCAAGAGGGTAGCGAGGGAGGATGCGAGCTTGGAACAG
GGGGCAAACCGCGCAGGGCGTGGGCATGGGCGGGGAGGAGGGCGAGGCGA
CACAGGGGGTGAAGGCTCTAGTGGGCGGGGACAGGGACCGGACGGAGGCA
GAGGGGGGCGGGGGCGGGGGCTTGAAGGAGGTCAGGGGGGGCGCGGGCAG
GGGGGGGAGGAAGAGAGAGGGCGCCGGGCTGTTGTTGGTCGTGGGCGTGT
AGTTGGCCGAACGGCGGGCGGTAGAGGGGCGGTGGGTGGGCGGGGAGTAG
AAAGTCGACCCGAGGCGGCGGCCGGCGGGCGAGAGGGAGGTCAGGGGCAA
GGGCGGGGGCGAAGAGAAGGAAGGGGCGGGCGTGGGAGGGGCGGCGGGTG
GGGTGGCGTTCGTGATCAAGTGGGGGGGGGGGTTGTGGCGAATGCCACTG
GGCGGGGTGCTGGTCGTGGTCGTGTGGTCGGAGGGGTAGTGGGGAATGCC
GGCGTATCCAGGTCAGGGCGAACGCTGACGCCGGCACGCGTAGTCGACGT
GTCGGTTTTTCTGTACCGATCCGAACTCAACCTAGTTTGATTCCAAATCG
GTTGAAAGCGCCCTTGGAATTGGCAAGGAGTCAGCAATCAAGTGGTTGGA
GTTTTTTTTGGAGCGTCGAGCAGTTCTGCGATTGTACGAGGCCACGCTGT
ACCGTTCTAGCGGTTTGAATCAGGTTCTGACTGGAAAATCCGGGGATGTG
ACCACTCTGTCCCCGGTTGGGGACTCCTCCCCCACGTTTGAATTCACTTG
CTCCTTGCTTTAGTGTCGAGGTCTGTGTCAAACGGCGAATCATGGGGTGA
AAGCGAAGTAGAGAAAAACAGGAGATGCAGCGTCGTGCATATCGGGACTG
GGGGTTGCCGTAGACGGACGCGAACACCGGTAAATGCACCCGCTTCTTAC
CGATCAACATGGCGTGCAAACTACCGTTTCATGTCGCGATTTTTTTGTGA
AGTCGTTGTAANAAGCGAAGTAGAGAAAAACAGGCGATGCAGCGTCGTGC
ATTTCGGGACTGGGGGTTGCCGTAGACGGACGCGAACACCGGTAAGTGCG
CCCGCTTCTTA

Coding sequence (CDS) from alignment at Scaffold_493:92876..96136+

>EsuBft886_2a-0001 ID=EsuBft886_2a-0001|Name=EsuBft886_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_493:92876..96136+ (Ectocarpus subulatus male Bft15b)
ATGGTCAGGTCTAAGGTGGACCCAGAGCAGGCGCAGAAGGCCATCGAGGC
TGTCCGCAGCGGCGCAATGTCTCTCCGGGCTGCTGCACAGGCCTATGGCG
TGAACAAGCGCTCTCTCTCTCGCCGGCTGACCGGTGATGAAAGCATGGAT
GCAAAGGTTGGTCCAAGGACTGTACTCACAGTCGAGGAGGAAAGTTTTGT
TGAAGATGCACTGCTGTATGCTGCTCGTCACTTCATCGGGATCGACCGGA
CCGCGCTGCAAGAACATGTGCGCCAGCTGTGCAATGACGGTCGCGATATC
CCGTGGGATGCAGCAGTCGGCCCGGGGCGATCATGGCTAGACGGCTTCTT
CAAGAGGCATCCTGCGCTATCGGAACGCAGCGCCCGCATCTACGAGGCCA
ACAGAATCATGAGTGACGACGAGACTCGCCTGCAGACGTTCTACAAGGAC
TTTGGCGAGTTCGTTGACAAGGAAAAGATCCCTGCCGATCACCTGTGGAA
CACAGATGAGACAGGTAGCACTTCACAAGGCACCAAGACAATGAAGGTGA
TTACGGAGAGCGGACAGAAAGTGGGTGGAGCGATGCGTTCAAACTCGAGA
GAAAACGTGACGGTGGTGGTCACCATCAGCGCGGCGGGTGCCACCCTCGC
CCCGTGGATCATCTACAAAGGGCAGCGTCTGCAAGCGGACTGGGTCAAAG
GCAGAAACGGCCCTCCGAACGCGAGACTGGCAGTCATCGATTCCTCGTTC
ATGCAGGGGACCGTATTCGTCAACTACATTCGCGACTTTCACCGGCAGCT
TCTAGACCGCGGCTTGATCAACGGCACGCCACACGTGCTCGTGCTTGATG
GCCACGCCTCGCATGTTACCTACGAAGTTGTAAAATTGGCCAGGGACCTA
AACATCGTCCTTTACCAGATACCGTCCCACTCGTCTCATGTTGTTCAGCC
CTTGGACGTCGGGTCGTTCGGGTCATTCAAGCGGGAAATCACCAAGGTTC
TCTCGGCCTTCCCGGCACGAAACGGCGGAAGGGTGCCCGCGAAGAGCGAC
ATGTTGGGCATTCTTGGGGATGCTTGGTTGCGGAGCTTTTCCGAGGAACG
GAACACATCATCCTTTGCAGGGGCAGGCCTTTGGCCGGTGGACGGGGAGC
GGGCGATGGGTCGACTTCAAGGTGTAGGGAAGAGGAAGGAACGATCAGGT
GCCCGCCCGCCCGTTGAGGACATCACAGGGGCGATTTCCGACAAGCATCT
TGCCGACAACCTCGGCCCACGAACGGTTCGCGAGCTGCAGCAAAAGGGCT
AG