EsuBft998_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft998_2a-0001
Unique Name	EsuBft998_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:157747..159450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	160860.XP_007357160.1
ProteomeId	EsuBft998_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4751\|Fungi
Length	170
Hectar predicted targeting category	other localisation
Evalue	1.88e-24
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi,3V3WY@5204\|Basidiomycota,22F53@155619\|Agaricomycetes,3H41B@355688\|Agaricomycetes incertae sedis
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft998_2a	EsuBft998_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 157747..159450 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_2a-0001-exon	EsuBft998_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 157747..159450 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_2a-0001-exon	agat-five_prime_utr-15593	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_49 157747..157786 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_2a-0001-cds	EsuBft998_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 157787..159421 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_2a-0001-exon	agat-three_prime_utr-23910	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 159422..159450 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_2a-0001	EsuBft998_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 157787..159421 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:157747..159450+
coding sequence from alignment at Scaffold_49:157747..159450+

spliced messenger RNA

>EsuBft998_2a-0001 ID=EsuBft998_2a-0001|Name=EsuBft998_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1704bp|location=Sequence derived from alignment at Scaffold_49:157747..159450+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAAAACAAAAAGTTGGCGGTGGACGCCCTGCACGCCCCATGACCTTCA
CGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCTGACTAGGCGT
GGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGAAAAAGTATCG
TCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGCATGTGGCGCA
GCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACGTGACTGGTCG
GCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTTCTAGCGGCAG
CGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAACGACACACCCC
CGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGCGGCTGAGATC
CTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTGGCCGACCGAA
GGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGATAGATACAGAG
AGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGAAGTGCGGGAC
CTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGAAACATGAGCA
GGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGGGGTGTGTGTG
TAGGCGACGTCGGATTCGTCGAGGGCACTCAAGACGACATCGACAAGGCC
CAAGATCTGCGGCGCGAGCGCTGCCGCATTTCGGAGGAAAAGCACGCAGC
AGGTGATCACACCAGGCCGGAAAAGTACCGCGACATCAACATGCTCTACT
TCGAGGGCGAGGGCGACGACCGCAAGTTCTCGACGTACTACAAGTTCGAG
TACGGCAAGAACAAGGAGGGCTACTGGACGGGGGAGAAGATGATCGAGCA
CATGGCGGATGTGTTGGATCTGTTGGCCGTCAAGTTCCCGAGGCACAGGC
CCATCTGTTTTTTCGACTGGTCATCGTGTCATGATTGCGTTGAGGAGGGG
GCACCGAGTGTAACTAGGATGAACGCAGGGTACGGGGGGGTGAGAAAGGG
TCAGGAGATAGCTCCTCAGAATGCAACTACCATACTGGAAGACACACCTA
AACTGAAGGTAGGGGCGGTGCAGCACCTCACCTTCCAGCAGGGAGAGTAT
CCATTCTATGAGCCAGGCGCCACCGATCACGTAGGCAAGGTCAAGGGGAT
GAAGCAAATCCTGTTTGAGAGGGGGCTTTGGATCCCAGGTATGACCATGT
CGGGGGGCAAGACGGGCCAGGAGCCTAACAAGAAGATGAGCATGCCGGCG
GTGTTGCGCGCGCAAAAGGATTTTGCGAACGTCGACTCTAGCCTAGAGGT
TCTGCTGAAGCGCCACGGAGGGGTTGCGCTCATGCTTCCAAAGTTCCATT
GCGAGTTGAACCCGATCGAGCTTGTGTGGGGTAGATCTAAGTGGTGGGTA
CGTAGGAACTGCAAGTACACTATCGCGTGCTTGCGAGAGAACGTTTCTAA
GAGCTACGGGGTACACAACTTGAGCCTAGACATTGTTCAAAAGTTCTGCA
GGAAGGTGGCCAACTTCCACGCGGTGTACGACGCCGGGCTTACGGGCGCC
GAGGCGGTAGAGGCGCAAGAGAAATGCAAGTCGCACCGTAAGCCAGCTCC
ATCCGAGTACATTAACCCCAAGTAGTGTATGCTATGATCGCGGCGGTACG
TATG

protein sequence of EsuBft998_2a-0001

>EsuBft998_2 ID=EsuBft998_2|Name=EsuBft998_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=544bp
MTFTLRLEALTAIRDALTRRGGTLTLVTQVKSAKKYRLQLTADLSDGSSS
MWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSN
DTPPPPRGKRPRDCQPAAEILTPPPKRPGYEGAGRPKGTFGRKRLRAMLD
RYRERIELGQVTCGRLEVRDLSSAMLDAAQEVEKHEQDWRPAFLKRQSNR
GVCVGDVGFVEGTQDDIDKAQDLRRERCRISEEKHAAGDHTRPEKYRDIN
MLYFEGEGDDRKFSTYYKFEYGKNKEGYWTGEKMIEHMADVLDLLAVKFP
RHRPICFFDWSSCHDCVEEGAPSVTRMNAGYGGVRKGQEIAPQNATTILE
DTPKLKVGAVQHLTFQQGEYPFYEPGATDHVGKVKGMKQILFERGLWIPG
MTMSGGKTGQEPNKKMSMPAVLRAQKDFANVDSSLEVLLKRHGGVALMLP
KFHCELNPIELVWGRSKWWVRRNCKYTIACLRENVSKSYGVHNLSLDIVQ
KFCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINPK

mRNA from alignment at Scaffold_49:157747..159450+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft998_2a-0001 ID=EsuBft998_2a-0001|Name=EsuBft998_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1704bp|location=Sequence derived from alignment at Scaffold_49:157747..159450+ (Ectocarpus subulatus male Bft15b)
TGAAAAACAAAAAGTTGGCGGTGGACGCCCTGCACGCCCCATGACCTTCA
CGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCTGACTAGGCGT
GGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGAAAAAGTATCG
TCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGCATGTGGCGCA
GCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACGTGACTGGTCG
GCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTTCTAGCGGCAG
CGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAACGACACACCCC
CGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGCGGCTGAGATC
CTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTGGCCGACCGAA
GGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGATAGATACAGAG
AGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGAAGTGCGGGAC
CTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGAAACATGAGCA
GGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGGGGTGTGTGTG
TAGGCGACGTCGGATTCGTCGAGGGCACTCAAGACGACATCGACAAGGCC
CAAGATCTGCGGCGCGAGCGCTGCCGCATTTCGGAGGAAAAGCACGCAGC
AGGTGATCACACCAGGCCGGAAAAGTACCGCGACATCAACATGCTCTACT
TCGAGGGCGAGGGCGACGACCGCAAGTTCTCGACGTACTACAAGTTCGAG
TACGGCAAGAACAAGGAGGGCTACTGGACGGGGGAGAAGATGATCGAGCA
CATGGCGGATGTGTTGGATCTGTTGGCCGTCAAGTTCCCGAGGCACAGGC
CCATCTGTTTTTTCGACTGGTCATCGTGTCATGATTGCGTTGAGGAGGGG
GCACCGAGTGTAACTAGGATGAACGCAGGGTACGGGGGGGTGAGAAAGGG
TCAGGAGATAGCTCCTCAGAATGCAACTACCATACTGGAAGACACACCTA
AACTGAAGGTAGGGGCGGTGCAGCACCTCACCTTCCAGCAGGGAGAGTAT
CCATTCTATGAGCCAGGCGCCACCGATCACGTAGGCAAGGTCAAGGGGAT
GAAGCAAATCCTGTTTGAGAGGGGGCTTTGGATCCCAGGTATGACCATGT
CGGGGGGCAAGACGGGCCAGGAGCCTAACAAGAAGATGAGCATGCCGGCG
GTGTTGCGCGCGCAAAAGGATTTTGCGAACGTCGACTCTAGCCTAGAGGT
TCTGCTGAAGCGCCACGGAGGGGTTGCGCTCATGCTTCCAAAGTTCCATT
GCGAGTTGAACCCGATCGAGCTTGTGTGGGGTAGATCTAAGTGGTGGGTA
CGTAGGAACTGCAAGTACACTATCGCGTGCTTGCGAGAGAACGTTTCTAA
GAGCTACGGGGTACACAACTTGAGCCTAGACATTGTTCAAAAGTTCTGCA
GGAAGGTGGCCAACTTCCACGCGGTGTACGACGCCGGGCTTACGGGCGCC
GAGGCGGTAGAGGCGCAAGAGAAATGCAAGTCGCACCGTAAGCCAGCTCC
ATCCGAGTACATTAACCCCAAGTAGTGTATGCTATGATCGCGGCGGTACG
TATG

Coding sequence (CDS) from alignment at Scaffold_49:157747..159450+

>EsuBft998_2a-0001 ID=EsuBft998_2a-0001|Name=EsuBft998_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1635bp|location=Sequence derived from alignment at Scaffold_49:157747..159450+ (Ectocarpus subulatus male Bft15b)
ATGACCTTCACGCTTCGCCTCGAGGCGCTGACGGCCATCAGGGACGCCCT
GACTAGGCGTGGTGGTACGCTGACCCTTGTAACTCAAGTGAAGAGCGCGA
AAAAGTATCGTCTCCAGCTGACAGCAGACCTGTCGGATGGGTCCAGCAGC
ATGTGGCGCAGCGACTACATCAAGTACCCAAAGGGACAAACCAAGGCACG
TGACTGGTCGGCCGAGGCAAAGTGGGCTGCTGCCTGGCGGCCATCTTCTT
CTAGCGGCAGCGCCGTTCTCTCCACAGAAGATGCGAGGCGTGGCAGCAAC
GACACACCCCCGCCGCCGCGGGGAAAAAGGCCGCGAGACTGTCAGCCTGC
GGCTGAGATCCTCACACCACCTCCAAAGCGCCCAGGATACGAAGGGGCTG
GCCGACCGAAGGGAACCTTCGGCCGGAAGAGGTTGCGCGCAATGTTGGAT
AGATACAGAGAGCGAATCGAGCTTGGCCAGGTGACCTGCGGCCGCTTGGA
AGTGCGGGACCTCTCCAGCGCGATGTTGGATGCGGCGCAAGAGGTGGAGA
AACATGAGCAGGACTGGCGACCGGCGTTTCTCAAGCGCCAGAGCAACAGG
GGTGTGTGTGTAGGCGACGTCGGATTCGTCGAGGGCACTCAAGACGACAT
CGACAAGGCCCAAGATCTGCGGCGCGAGCGCTGCCGCATTTCGGAGGAAA
AGCACGCAGCAGGTGATCACACCAGGCCGGAAAAGTACCGCGACATCAAC
ATGCTCTACTTCGAGGGCGAGGGCGACGACCGCAAGTTCTCGACGTACTA
CAAGTTCGAGTACGGCAAGAACAAGGAGGGCTACTGGACGGGGGAGAAGA
TGATCGAGCACATGGCGGATGTGTTGGATCTGTTGGCCGTCAAGTTCCCG
AGGCACAGGCCCATCTGTTTTTTCGACTGGTCATCGTGTCATGATTGCGT
TGAGGAGGGGGCACCGAGTGTAACTAGGATGAACGCAGGGTACGGGGGGG
TGAGAAAGGGTCAGGAGATAGCTCCTCAGAATGCAACTACCATACTGGAA
GACACACCTAAACTGAAGGTAGGGGCGGTGCAGCACCTCACCTTCCAGCA
GGGAGAGTATCCATTCTATGAGCCAGGCGCCACCGATCACGTAGGCAAGG
TCAAGGGGATGAAGCAAATCCTGTTTGAGAGGGGGCTTTGGATCCCAGGT
ATGACCATGTCGGGGGGCAAGACGGGCCAGGAGCCTAACAAGAAGATGAG
CATGCCGGCGGTGTTGCGCGCGCAAAAGGATTTTGCGAACGTCGACTCTA
GCCTAGAGGTTCTGCTGAAGCGCCACGGAGGGGTTGCGCTCATGCTTCCA
AAGTTCCATTGCGAGTTGAACCCGATCGAGCTTGTGTGGGGTAGATCTAA
GTGGTGGGTACGTAGGAACTGCAAGTACACTATCGCGTGCTTGCGAGAGA
ACGTTTCTAAGAGCTACGGGGTACACAACTTGAGCCTAGACATTGTTCAA
AAGTTCTGCAGGAAGGTGGCCAACTTCCACGCGGTGTACGACGCCGGGCT
TACGGGCGCCGAGGCGGTAGAGGCGCAAGAGAAATGCAAGTCGCACCGTA
AGCCAGCTCCATCCGAGTACATTAACCCCAAGTAG