EsuBft413_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft413_8a-0001
Unique Name	EsuBft413_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:61642..62907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7029.ACYPI22631-PA
ProteomeId	EsuBft413_8
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR000477
Protein domains	G3DSA
Protein domains	SSF56672
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1128
Hectar predicted targeting category	other localisation
Evalue	1.84e-51
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria,41WI3@6656\|Arthropoda,3SIRK@50557\|Insecta,3ECJT@33342\|Paraneoptera
Date last modified	2016-06-15
Date creation	2016-06-15
Description	K02A2.6-like
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft413_8a	EsuBft413_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 61642..62907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_8a-0001-exon	agat-exon-23104	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 61642..62247 +
EsuBft413_8a-0001-exon	EsuBft413_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 62386..62907 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_8a-0001-cds	EsuBft413_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 61642..62247 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft413_8a-0001	EsuBft413_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 61642..62907 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:61642..62907+
coding sequence from alignment at Scaffold_49:61642..62907+

spliced messenger RNA

>EsuBft413_8a-0001 ID=EsuBft413_8a-0001|Name=EsuBft413_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1128bp|location=Sequence derived from alignment at Scaffold_49:61642..62907+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCTTCGTTCCATCAAATCACGGTTCATCGTGATACCATCCCTCT
CACGGCGATTGTTACGTCTTCTGGGCTGTTTGAGTGGTTGAAAATGCCTC
AGGGCAGCGCCGCTGCTCCCGGATGGTTCTGTAAGGTCGTCAACAAAGTC
ATCAAAAATCTTCGAAGTGTTGCGTCGTACCTGGACGACCTCATTATCTT
TGATGAAACCCCGGCCGCTCATGTAGCGACCATTCGCTCTCTTTTCGAAA
GATTGTGCAAGCACAATTTGAAGCTGACTCTCCCAAAAGCCACTATTTGC
GCCACGGAAGCCGAGATTCTTGGGCACACTATATCTCCGGACGGCGTTCG
ACCGAGTGGTGAAATTTTGTTTGCTCTCACCAAGATGCCGATGCCCAAAG
ACACCAAGCAGCTTCGAGCTTTGCTGGGTGGTTTGAGCTATTATCGGAAG
TTTCTTCCACAGATGGCTAAGCGTATTCACCCTCCTACGACTCTACTTAA
GAAGAATGTCAAGTTTGAGTTCACGGGTTCAATGGAATCCGTCGTTCGCC
AACTTCTCGAGGAACTGGCGAACCCTCCTGTTCTGGTGTATCCAGATTGG
GATGCTGGTCATTGGACTCCTCTGGATCTTGAAGCTGGCAGTATCATTTG
GTGCATCAAGCACCTTCGCGATTACCTTTGGGGCACCCATTTCAAGATTT
TCACGGATCACAAGTCCCCTGAACACCTTAAACAGGTGGGGGAAGCCAAC
GCTCGCGTTCAACGTTGGTGGGAATTCCTCACGGCATACTCCTACGCTCT
TGAGTATCGTAAGGGTTCGTCTAACGGCAATGCTGACTTGTTCTCTCGAC
TACCGCTAGAAGCTACCGAGCGTGACCGTTCTGGCCGCAGTCGTTTGACT
CCGTCGGCTGAAGACGGAGTGTTTTTTTTATTCGTTCTTGTGGATTTGTG
CCTTCTGGCCATCACGCCGGTGTCAGCTTGGGTGGGCTCGTTCCGTCTGC
CCCGAGTTCAGTCTTGGGTGCGCTATAGCCTTCTTCAGCTGACTTTGCTG
ATTTTCGTGAGGATGGACCGCGCGCTAGTGTCGTTCATTCCGGAGTTCCT
TCGGGCGTCTGGTCTGTTAAAGGTTTAA

protein sequence of EsuBft413_8a-0001

>EsuBft413_8 ID=EsuBft413_8|Name=EsuBft413_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=375bp
MKSSFHQITVHRDTIPLTAIVTSSGLFEWLKMPQGSAAAPGWFCKVVNKV
IKNLRSVASYLDDLIIFDETPAAHVATIRSLFERLCKHNLKLTLPKATIC
ATEAEILGHTISPDGVRPSGEILFALTKMPMPKDTKQLRALLGGLSYYRK
FLPQMAKRIHPPTTLLKKNVKFEFTGSMESVVRQLLEELANPPVLVYPDW
DAGHWTPLDLEAGSIIWCIKHLRDYLWGTHFKIFTDHKSPEHLKQVGEAN
ARVQRWWEFLTAYSYALEYRKGSSNGNADLFSRLPLEATERDRSGRSRLT
PSAEDGVFFLFVLVDLCLLAITPVSAWVGSFRLPRVQSWVRYSLLQLTLL
IFVRMDRALVSFIPEFLRASGLLKV

mRNA from alignment at Scaffold_49:61642..62907+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft413_8a-0001 ID=EsuBft413_8a-0001|Name=EsuBft413_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1266bp|location=Sequence derived from alignment at Scaffold_49:61642..62907+ (Ectocarpus subulatus male Bft15b)
ATGAAATCTTCGTTCCATCAAATCACGGTTCATCGTGATACCATCCCTCT
CACGGCGATTGTTACGTCTTCTGGGCTGTTTGAGTGGTTGAAAATGCCTC
AGGGCAGCGCCGCTGCTCCCGGATGGTTCTGTAAGGTCGTCAACAAAGTC
ATCAAAAATCTTCGAAGTGTTGCGTCGTACCTGGACGACCTCATTATCTT
TGATGAAACCCCGGCCGCTCATGTAGCGACCATTCGCTCTCTTTTCGAAA
GATTGTGCAAGCACAATTTGAAGCTGACTCTCCCAAAAGCCACTATTTGC
GCCACGGAAGCCGAGATTCTTGGGCACACTATATCTCCGGACGGCGTTCG
ACCGAGTGGTGAAATTTTGTTTGCTCTCACCAAGATGCCGATGCCCAAAG
ACACCAAGCAGCTTCGAGCTTTGCTGGGTGGTTTGAGCTATTATCGGAAG
TTTCTTCCACAGATGGCTAAGCGTATTCACCCTCCTACGACTCTACTTAA
GAAGAATGTCAAGTTTGAGTTCACGGGTTCAATGGAATCCGTCGTTCGCC
AACTTCTCGAGGAACTGGCGAACCCTCCTGTTCTGGTGTATCCAGATTGG
GATGCTGTATCCGACGGTTTGCGCCCTTGTCGCCTCTACTGTGACGCGAG
TAAAGATGGGTTTGGTGAAACGTTTGGACAAGAGCAACCTGATTTCTCTA
TTCTGCCTTTCGTTTTCGTTAGCCGAGCTACACTGGAGTCTTAGGGTCAT
TGGACTCCTCTGGATCTTGAAGCTGGCAGTATCATTTGGTGCATCAAGCA
CCTTCGCGATTACCTTTGGGGCACCCATTTCAAGATTTTCACGGATCACA
AGTCCCCTGAACACCTTAAACAGGTGGGGGAAGCCAACGCTCGCGTTCAA
CGTTGGTGGGAATTCCTCACGGCATACTCCTACGCTCTTGAGTATCGTAA
GGGTTCGTCTAACGGCAATGCTGACTTGTTCTCTCGACTACCGCTAGAAG
CTACCGAGCGTGACCGTTCTGGCCGCAGTCGTTTGACTCCGTCGGCTGAA
GACGGAGTGTTTTTTTTATTCGTTCTTGTGGATTTGTGCCTTCTGGCCAT
CACGCCGGTGTCAGCTTGGGTGGGCTCGTTCCGTCTGCCCCGAGTTCAGT
CTTGGGTGCGCTATAGCCTTCTTCAGCTGACTTTGCTGATTTTCGTGAGG
ATGGACCGCGCGCTAGTGTCGTTCATTCCGGAGTTCCTTCGGGCGTCTGG
TCTGTTAAAGGTTTAA

Coding sequence (CDS) from alignment at Scaffold_49:61642..62907+

>EsuBft413_8a-0001 ID=EsuBft413_8a-0001|Name=EsuBft413_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1128bp|location=Sequence derived from alignment at Scaffold_49:61642..62907+ (Ectocarpus subulatus male Bft15b)
ATGAAATCTTCGTTCCATCAAATCACGGTTCATCGTGATACCATCCCTCT
CACGGCGATTGTTACGTCTTCTGGGCTGTTTGAGTGGTTGAAAATGCCTC
AGGGCAGCGCCGCTGCTCCCGGATGGTTCTGTAAGGTCGTCAACAAAGTC
ATCAAAAATCTTCGAAGTGTTGCGTCGTACCTGGACGACCTCATTATCTT
TGATGAAACCCCGGCCGCTCATGTAGCGACCATTCGCTCTCTTTTCGAAA
GATTGTGCAAGCACAATTTGAAGCTGACTCTCCCAAAAGCCACTATTTGC
GCCACGGAAGCCGAGATTCTTGGGCACACTATATCTCCGGACGGCGTTCG
ACCGAGTGGTGAAATTTTGTTTGCTCTCACCAAGATGCCGATGCCCAAAG
ACACCAAGCAGCTTCGAGCTTTGCTGGGTGGTTTGAGCTATTATCGGAAG
TTTCTTCCACAGATGGCTAAGCGTATTCACCCTCCTACGACTCTACTTAA
GAAGAATGTCAAGTTTGAGTTCACGGGTTCAATGGAATCCGTCGTTCGCC
AACTTCTCGAGGAACTGGCGAACCCTCCTGTTCTGGTGTATCCAGATTGG
GATGCTGGTCATTGGACTCCTCTGGATCTTGAAGCTGGCAGTATCATTTG
GTGCATCAAGCACCTTCGCGATTACCTTTGGGGCACCCATTTCAAGATTT
TCACGGATCACAAGTCCCCTGAACACCTTAAACAGGTGGGGGAAGCCAAC
GCTCGCGTTCAACGTTGGTGGGAATTCCTCACGGCATACTCCTACGCTCT
TGAGTATCGTAAGGGTTCGTCTAACGGCAATGCTGACTTGTTCTCTCGAC
TACCGCTAGAAGCTACCGAGCGTGACCGTTCTGGCCGCAGTCGTTTGACT
CCGTCGGCTGAAGACGGAGTGTTTTTTTTATTCGTTCTTGTGGATTTGTG
CCTTCTGGCCATCACGCCGGTGTCAGCTTGGGTGGGCTCGTTCCGTCTGC
CCCGAGTTCAGTCTTGGGTGCGCTATAGCCTTCTTCAGCTGACTTTGCTG
ATTTTCGTGAGGATGGACCGCGCGCTAGTGTCGTTCATTCCGGAGTTCCT
TCGGGCGTCTGGTCTGTTAAAGGTTTAA