EsuBft1138_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1138_9a-0001
Unique NameEsuBft1138_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:263955..267259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQW8
ProteomeIdEsuBft1138_9
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPTHR11475
Protein domainsTMhelix
Protein domainsIPR019791
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR010255
Protein domainsIPR005018
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteperoxinectin a os:dictyostelium discoideum gn:poxa pe:2 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1186
Hectar predicted targeting categoryother localisation
Evalue3.29e-255
EggNOG OGsKOG2408@1|root,KOG2408@2759|Eukaryota
Ec32 ortholog descriptionHaem peroxidase, animal
Ec32 orthologEc-02_003170.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionperoxidase activity
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0071704
GO0055114
GO0006979
GO0051179
GO0004601
GO0020037
GO0040011
GO0008152
GO0009791
GO0044237
GO0044238
GO0018996
GO0065007
GO0040002
GO0010171
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_9aEsuBft1138_9aEctocarpus subulatus male Bft15bgeneScaffold_478 263955..267259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_9a-0001EsuBft1138_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 263955..267231 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_9a-0001-exonEsuBft1138_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 263955..264194 -
EsuBft1138_9a-0001-exonagat-exon-89653Ectocarpus subulatus male Bft15bexonScaffold_478 264558..264764 -
EsuBft1138_9a-0001-exonagat-exon-89655Ectocarpus subulatus male Bft15bexonScaffold_478 264988..265092 -
EsuBft1138_9a-0001-exonagat-exon-89654Ectocarpus subulatus male Bft15bexonScaffold_478 265349..265438 -
EsuBft1138_9a-0001-exonagat-exon-89656Ectocarpus subulatus male Bft15bexonScaffold_478 265769..265877 -
EsuBft1138_9a-0001-exonagat-exon-89657Ectocarpus subulatus male Bft15bexonScaffold_478 266471..266688 -
EsuBft1138_9a-0001-exonagat-exon-89658Ectocarpus subulatus male Bft15bexonScaffold_478 267043..267259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_9a-0001-cdsEsuBft1138_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 263955..264194 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1138_9a-0001-exonagat-five_prime_utr-841Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_478 267232..267259 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1138_9a-0001 ID=EsuBft1138_9a-0001|Name=EsuBft1138_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1186bp|location=Sequence derived from alignment at Scaffold_478:263955..267259- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCGAGCTGAATGTCGCGAGCGCCGACATGGCCGGGATCTTCGCGAGAA
ACGATGTCGCCGACGTCCTTCGCGGCGCCGTGCTCTCGCCGGCCCTGACC
GTGGACGCCTACTACTCCCCCGTGGTGTCCAACCTGTCCCCGCTGTTCAA
GCTCCCGGTCGACGGCGTCCAGAGGGGGCGGGACCACGGGCTGCCCTCGT
ACAACGCTGCCCGAGAGGCGTACGGCCTGGACCCGGCGACGACGTTCGAG
GACGTCTCAGACGACGCCGACCTGGCCTCGCGCCTGTCCGACGCGTACGG
CGGGGACATCGACGGCCTCGACGCCTTTACGGGGGCGCTGGCCGAGGGGA
CGGACTCGAGCACGGGGGGCGTGCTGGGGGACCTCCTCGTCGCGGCGTGG
TCGGACCAGCTCACCCGCTCCATCGCGGGGGACAGGTTCTATCACCTGCA
CGTCCGTAACATGGAGAACGTGGCCAACACGACGCTCATGGATGTCATCG
GCCGCGTCACGAACGCCACGGACCTACCGCTCTCCGTGTTTCAGGCGCCC
AGCATCACCGTGTGCGACGGAGGGTGCGCCGGAGACGGAGATGGCGTCGC
CGTATTGTCGGACAACTTCGAGCTCGAGTGGGAGGAACTGGAGGACGACC
AGATGGCCATCACGTTTCGATGCAAGGATCTCGGGACGTCGGGGTGGATG
GGGGTAGGGTGGGGAGGGCTGACGATGGAACTGGCCCAGGATTATATTAT
ATGCGAGATCACCGACGAGAGCACTGCTTCCTGCACAGATCGTGCTTACA
CGACCGAGCGCGAGGCACCCCCCCTGGACGCCGCGGGCGAGACCTCCCTC
AACATCACCGACGTCTCCATGGAGGACGGGTGGACGTCCATCACCTTCCT
GCGAGACCGAGGGGCGTTCGATGACGAGGACTACGACCTGGGGTCGGACA
TCGACGACGCGGTGGACACTCTGGTCATATACGCCTATCGCGAGGGGGAG
GGTATCGGGCAGCACCCGAACGGAAACCGCGGGGCCGCCACGGTCAACTT
CGCCACCGGCAACGTGGAGGCGGAGTGCGACGACGACGACTTCGTGCTCC
TGCACGGGGCCCTGATGCTTGTCGCCTGGATGGTGCTGGCACCCCTAGGC
ATCTACTACGTCAGGTGTTTGTTTTACTCCTCGTGA
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protein sequence of EsuBft1138_9a-0001

>EsuBft1138_9 ID=EsuBft1138_9|Name=EsuBft1138_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=385bp
MAGIFARNDVADVLRGAVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRG
RDHGLPSYNAAREAYGLDPATTFEDVSDDADLASRLSDAYGGDIDGLDAF
TGALAEGTDSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHVRNMENVAN
TTLMDVIGRVTNATDLPLSVFQAPSITVCDGGCAGDGDGVAVLSDNFELE
WEELEDDQMAITFRCKDLGTSGWMGVGWGGLTMELAQDYIICEITDESTA
SCTDRAYTTEREAPPLDAAGETSLNITDVSMEDGWTSITFLRDRGAFDDE
DYDLGSDIDDAVDTLVIYAYREGEGIGQHPNGNRGAATVNFATGNVEAEC
DDDDFVLLHGALMLVAWMVLAPLGIYYVRCLFYSS
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mRNA from alignment at Scaffold_478:263955..267259-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1138_9a-0001 ID=EsuBft1138_9a-0001|Name=EsuBft1138_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3305bp|location=Sequence derived from alignment at Scaffold_478:263955..267259- (Ectocarpus subulatus male Bft15b)
TGTCGAGCTGAATGTCGCGAGCGCCGACATGGCCGGGATCTTCGCGAGAA
ACGATGTCGCCGACGTCCTTCGCGGCGCCGTGCTCTCGCCGGCCCTGACC
GTGGACGCCTACTACTCCCCCGTGGTGTCCAACCTGTCCCCGCTGTTCAA
GCTCCCGGTCGACGGCGTCCAGAGGGGGCGGGACCACGGGCTGCCCTCGT
ACAACGCTGCCCGAGAGGTGACGATGAGATAGACACGTGGTCAGGGGGGT
TCGGGTGTCAGTAGGATATAGGAGATAGGTGCTCCCGTGCTGCGAGTAAT
AGTTGGGTCCAGGAGACTGCCATGCTGCCAGTTGTAGTGGCAGTTCGGGC
CATGAGACTCTTAAGCCTTCCAGCAGTAGCCAGTAGGGGTTCCAGAAGAC
TCTCATGCTACTTGTGGTCAAGCCAGGTTCATCCAGACAATGAACCGGAA
CACTCGGGGTTACATGGAGTTACCTACCCCCCCCGGGTCGTTGGCGTTCC
ATCCACGGCTGCTGCTGCTGCTGCTGCTGAACGTCGTCGTTGCTTATTGG
CATTTCGTTTTTCGCGGGAAGGCGTACGGCCTGGACCCGGCGACGACGTT
CGAGGACGTCTCAGACGACGCCGACCTGGCCTCGCGCCTGTCCGACGCGT
ACGGCGGGGACATCGACGGCCTCGACGCCTTTACGGGGGCGCTGGCCGAG
GGGACGGACTCGAGCACGGGGGGCGTGCTGGGGGACCTCCTCGTCGCGGC
GTGGTCGGACCAGCTCACCCGCTCCATCGCGGGGGACAGGTTGGTTGGTT
TTTGCGGCTGTGGCGGTGTTGGTGGCTGTTATTTATTTGCAGCAGAGGCA
TTGGGAGCGGCTACGGTTAATAAACGGAAATACATTATTCGTTGAGAGGA
GATGTGCGGGTGTTTGTAGAGATAAGAGGTGACTTGTCCCGCCCATTAGG
AGTACTAGTTGGATAGCAGTATAATACGTTTGAAGAGAAAACGGGGTTTA
TTTTGGGTTTTAAGAGAGTGTTTTGTGGCCTTGCATCTCCTTCTGTAACA
AGGCGCGAATGCCGCACGGGAGCCCCTGTGTGATCCCGACCCTTCTCCTG
TGTTCAGTGTGAACTTTCCACGGTACTGGTGCATGATGCATACCGTGACT
GTAAACCAATACCACGGTAATACAGCAGTCTCCCTAAACGGTATTGCACT
CCTCGCGAGGCTTTCGGCCATTTCACCGCTGTGCTTACCGCCGCTTTTTT
TTCTTCCTTCTCCCTCTTGTCACGAATCTGGCCGTTGTCGTCCACAACCC
CGCTGGGCTTATCGTTGCCATGTACCATGTCAACGCCGCCGTTCCGCGCC
GCGATTTTTCTTGCGCACGTCGCGAAACCCAGGTTCTATCACCTGCACGT
CCGTAACATGGAGAACGTGGCCAACACGACGCTCATGGATGTCATCGGCC
GCGTCACGAACGCCACGGACCTACCGCTCTCCGTGTTTCAGGTGTGCATG
CAAGTTCGATTTGGTTCGGCCTGTGTGCATCTCTTTGTGTCCATCCCATC
AATCGTTTGTTTGAGTTCCACCAAACGTAAAGAGTAGGCAGCCCCCGTAC
CTGAGTGTCAAAAGTAGATGCTGGTGACTCGTTCGGCCGTTCGTTCGCAC
TTGTGTTGCAGGCCCATGTCTTTCCGAGCTTCCTCTTATCTGTTGTGCTA
GAATCTTTGACGCATGGAAGATCTCATCCTTTTTTGTGGACTACTTTGTT
CAAATCTGTTTTCTTCTTGTCCTTCTCGTGCGTCTTCTTCTTCCTTCTCG
TGCACCTCGTCATTTCCAAAGGCGCCCAGCATCACCGTGTGCGACGGAGG
GTGCGCCGGAGACGGAGATGGCGTCGCCGTATTGTCGGACAACTTCGAGC
TCGAGTGGGAGGTCAGTTCGTCGTAGACTACGAGATAGGCATGGTAAATG
TTTTGCAAGGCTGCGTTGTTTTTTTTGGCACGGGTTTTCTTTTTCTAGCG
CATCGTCCCCAAGAAATTTGTTTTTTTGCTCCCCAGACAAAAGGGTGCGC
GCTTGCACACCGCTTGCGTTTCATCTTAGCGCACCACGTCAAAGGTTCCA
CGCGCTTTTTTTGAGATGTTTCTTTTTTGACCTTGCTGTGATGTTTTTCA
ACGTGGACCATCGGCAGGAACTGGAGGACGACCAGATGGCCATCACGTTT
CGATGCAAGGATCTCGGGACGTCGGGGTGGATGGGGGTAGGGTGGGGAGG
GCTGACGATGGAACTGGCCCAGGTAAGGAGGAAGGGTCGGACAAGGTAAA
CGTCTACACCCTGCCTGTTTCTGGTGTTCCTGGTAAAATGCTGACCCCGT
AAGCTTGTCTCCGGTAAACGTTTTCCTGCGAAAACAAGTCGATCAACGGT
AGACAACACAGGGCTAATCTTAAGCACACGTTACGAACTGACCAAGCTTA
CCCACACCCCACGCCCGCCCTTCCTTCCACGCCCCTGCCTCGAAGGATTA
TATTATATGCGAGATCACCGACGAGAGCACTGCTTCCTGCACAGATCGTG
CTTACACGACCGAGCGCGAGGCACCCCCCCTGGACGCCGCGGGCGAGACC
TCCCTCAACATCACCGACGTCTCCATGGAGGACGGGTGGACGTCCATCAC
CTTCCTGCGAGACCGAGGGGCGTTCGATGACGAGGACTACGACCTGGGGT
CGGTGCGTCGTTGTTGATGTTGTTGTTTGTGGTGGTGATGTCTTAACCCT
GTCATCGCTTCCTTACTACTGTACTACGTTAGTAGATAGTATAGGTCGTT
GTTCGCCTAATTCTCGTACCCCCTGGCGCGGCGTCCTGCTCCAGCCGATA
AGGTTGGCTAGGCGCCCCCTCTCGGAACAGTTCGTCGTTTGAGTCAATTG
TCAACAGACTTTTGAGGCCATGTGCCCCCTCTCGCAACGGCCTCGTCTTA
CATCATTGCCTACTCAGTTGAAAAGCCTGTGCGCCTCCTCGCACCGCTTT
CGTCCTTGGGTCAATGCCTGCCAACTTAACGAAACAAGTAAGATCGCCCG
CGCCTCCAACAACAGGACATCGACGACGCGGTGGACACTCTGGTCATATA
CGCCTATCGCGAGGGGGAGGGTATCGGGCAGCACCCGAACGGAAACCGCG
GGGCCGCCACGGTCAACTTCGCCACCGGCAACGTGGAGGCGGAGTGCGAC
GACGACGACTTCGTGCTCCTGCACGGGGCCCTGATGCTTGTCGCCTGGAT
GGTGCTGGCACCCCTAGGCATCTACTACGTCAGGTGTTTGTTTTACTCCT
CGTGA
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Coding sequence (CDS) from alignment at Scaffold_478:263955..267259-

>EsuBft1138_9a-0001 ID=EsuBft1138_9a-0001|Name=EsuBft1138_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1158bp|location=Sequence derived from alignment at Scaffold_478:263955..267259- (Ectocarpus subulatus male Bft15b)
ATGGCCGGGATCTTCGCGAGAAACGATGTCGCCGACGTCCTTCGCGGCGC
CGTGCTCTCGCCGGCCCTGACCGTGGACGCCTACTACTCCCCCGTGGTGT
CCAACCTGTCCCCGCTGTTCAAGCTCCCGGTCGACGGCGTCCAGAGGGGG
CGGGACCACGGGCTGCCCTCGTACAACGCTGCCCGAGAGGCGTACGGCCT
GGACCCGGCGACGACGTTCGAGGACGTCTCAGACGACGCCGACCTGGCCT
CGCGCCTGTCCGACGCGTACGGCGGGGACATCGACGGCCTCGACGCCTTT
ACGGGGGCGCTGGCCGAGGGGACGGACTCGAGCACGGGGGGCGTGCTGGG
GGACCTCCTCGTCGCGGCGTGGTCGGACCAGCTCACCCGCTCCATCGCGG
GGGACAGGTTCTATCACCTGCACGTCCGTAACATGGAGAACGTGGCCAAC
ACGACGCTCATGGATGTCATCGGCCGCGTCACGAACGCCACGGACCTACC
GCTCTCCGTGTTTCAGGCGCCCAGCATCACCGTGTGCGACGGAGGGTGCG
CCGGAGACGGAGATGGCGTCGCCGTATTGTCGGACAACTTCGAGCTCGAG
TGGGAGGAACTGGAGGACGACCAGATGGCCATCACGTTTCGATGCAAGGA
TCTCGGGACGTCGGGGTGGATGGGGGTAGGGTGGGGAGGGCTGACGATGG
AACTGGCCCAGGATTATATTATATGCGAGATCACCGACGAGAGCACTGCT
TCCTGCACAGATCGTGCTTACACGACCGAGCGCGAGGCACCCCCCCTGGA
CGCCGCGGGCGAGACCTCCCTCAACATCACCGACGTCTCCATGGAGGACG
GGTGGACGTCCATCACCTTCCTGCGAGACCGAGGGGCGTTCGATGACGAG
GACTACGACCTGGGGTCGGACATCGACGACGCGGTGGACACTCTGGTCAT
ATACGCCTATCGCGAGGGGGAGGGTATCGGGCAGCACCCGAACGGAAACC
GCGGGGCCGCCACGGTCAACTTCGCCACCGGCAACGTGGAGGCGGAGTGC
GACGACGACGACTTCGTGCTCCTGCACGGGGCCCTGATGCTTGTCGCCTG
GATGGTGCTGGCACCCCTAGGCATCTACTACGTCAGGTGTTTGTTTTACT
CCTCGTGA
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