EsuBft963_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft963_4a-0001
Unique NameEsuBft963_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:60495..61378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft963_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length36
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft963_4aEsuBft963_4aEctocarpus subulatus male Bft15bgeneScaffold_478 60495..61378 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_4a-0001-exonEsuBft963_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 60495..60765 +
EsuBft963_4a-0001-exonagat-exon-58319Ectocarpus subulatus male Bft15bexonScaffold_478 61287..61378 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_4a-0001-exonagat-five_prime_utr-15322Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_478 60495..60614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_4a-0001-cdsEsuBft963_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 60615..60765 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_4a-0001-exonagat-three_prime_utr-23551Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_478 61328..61378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_4a-0001EsuBft963_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 60615..61327 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft963_4a-0001 ID=EsuBft963_4a-0001|Name=EsuBft963_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_478:60495..61378+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCTTGTCGGGAGGGAACTTCGCCGAAGCACCTTAGCTGGAGAACACAGC
CGCCGCAAGAGAGCACGTTTGCTCTCTAAGATCGGTTTGATTGGTGTGAC
ATTTACAGTTCCTCCGGCGCATGAGCTACCTTACCCTCTTCGACCGAAAC
AAGCTGGCTAGCTCTCCCACACGCTGCTGGTACCGCCGTGATACCGCGGT
AGTCCCCGGCAGATCGAGGACGAGCAGTCTGGATCCTCCTACTCCCCGCA
CCTTCCTCTTCTCCTTCCTTGCGAAGCAGTCGAAGCAGTCGAAGCAGCAG
CGACGGCCGTAGTCGCAGCAGCAGCCTTGGAGTCAGAAACAACCCGCCGG
GCGTGAGCGGCAG
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protein sequence of EsuBft963_4a-0001

>EsuBft963_4 ID=EsuBft963_4|Name=EsuBft963_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=63bp
MSYLTLFDRNKLASSPTRCWYRRDTAVVPGRSRTSSLDPPTPRTFLFSFL
AKQSKQSKQQRRP
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mRNA from alignment at Scaffold_478:60495..61378+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft963_4a-0001 ID=EsuBft963_4a-0001|Name=EsuBft963_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_478:60495..61378+ (Ectocarpus subulatus male Bft15b)
GCCTTGTCGGGAGGGAACTTCGCCGAAGCACCTTAGCTGGAGAACACAGC
CGCCGCAAGAGAGCACGTTTGCTCTCTAAGATCGGTTTGATTGGTGTGAC
ATTTACAGTTCCTCCGGCGCATGAGCTACCTTACCCTCTTCGACCGAAAC
AAGCTGGCTAGCTCTCCCACACGCTGCTGGTACCGCCGTGATACCGCGGT
AGTCCCCGGCAGATCGAGGACGAGCAGTCTGGATCCTCCTACTCCCCGCA
CCTTCCTCTTCTCCTTCCTTGGTGAGTCGCAATCCTGTGTAGCTGCGTGG
AAGTGTCGGACTGCAGCAGGGTTTGAGCTCGTTTGTCTGCAGCAGTAGTA
TTTCCCTTGTCCATAAGAGTGGAGTATTACATGTAGCTGTAGTGCCTTGA
CTTGCTCGGCTCTTCTGTGGCGGACCATGGAAAACAGCAAGTGCTCCTGT
AGTCTTTGGTTGCACATTAGGCGTTGGAGTAGCCGACTTCGGGTTTTCTT
TTATCTGTCAGCTACTGCTGTACCGCCCTTCATCTGGGAAACAGCAGCGT
TAGACTGCTGCTGTGCCAAGGGTGCAGTCTAGACTACATGTACTGCTGTA
CACGTTTCGGTGCCCACAATCCAGGCGGGGGGCGTTCGTGTAACAAAGTG
CCCCTCACCAGCGGCGCGGGGGCTAACTTGCCACAAGAATAGTCTCGAAG
AAGCTAGACTACTGCTGTAAATCGAGGACGCCCCGTTCCGCAAACGATAA
ACACAAATATGACCAACGTTTTTAACATCTCTGGGACCGCAGCGAAGCAG
TCGAAGCAGTCGAAGCAGCAGCGACGGCCGTAGTCGCAGCAGCAGCCTTG
GAGTCAGAAACAACCCGCCGGGCGTGAGCGGCAG
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Coding sequence (CDS) from alignment at Scaffold_478:60495..61378+

>EsuBft963_4a-0001 ID=EsuBft963_4a-0001|Name=EsuBft963_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=192bp|location=Sequence derived from alignment at Scaffold_478:60495..61378+ (Ectocarpus subulatus male Bft15b)
ATGAGCTACCTTACCCTCTTCGACCGAAACAAGCTGGCTAGCTCTCCCAC
ACGCTGCTGGTACCGCCGTGATACCGCGGTAGTCCCCGGCAGATCGAGGA
CGAGCAGTCTGGATCCTCCTACTCCCCGCACCTTCCTCTTCTCCTTCCTT
GCGAAGCAGTCGAAGCAGTCGAAGCAGCAGCGACGGCCGTAG
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