EsuBft1125_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1125_3a-0001
Unique Name	EsuBft1125_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_133	contig	Scaffold_133:651310..654731 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1125_3
Protein domains	IPR029526
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	149
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_3a	EsuBft1125_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_133 651310..654731 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_3a-0001	EsuBft1125_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_133 651330..654681 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_3a-0001-exon	agat-exon-7886	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 651310..651557 +
EsuBft1125_3a-0001-exon	agat-exon-7885	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 651917..652311 +
EsuBft1125_3a-0001-exon	agat-exon-7888	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 652716..652861 +
EsuBft1125_3a-0001-exon	agat-exon-7887	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 653710..653743 +
EsuBft1125_3a-0001-exon	EsuBft1125_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 654063..654731 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_3a-0001-exon	agat-five_prime_utr-745	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_133 651310..651329 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_3a-0001-cds	EsuBft1125_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_133 651330..651557 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1125_3a-0001-exon	agat-three_prime_utr-1173	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_133 654682..654731 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_133:651310..654731+
coding sequence from alignment at Scaffold_133:651310..654731+

spliced messenger RNA

>EsuBft1125_3a-0001 ID=EsuBft1125_3a-0001|Name=EsuBft1125_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1492bp|location=Sequence derived from alignment at Scaffold_133:651310..654731+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGTGTGGACGGAAAGGGGGATGGAGGACTACGAAACGTCCGACCACTTC
ACGAGGCGCAACAAGATGTCAAAAGACATCGGGCGTGGAGTTTCGTTGTC
GGCAGAGGCTCGCGCCGCGCTGCCATCGTTGGACAACTTCATGTCGCACC
AGAACCCTACCAGCGGGGAGTTTTCGCTTGACCTCGTCTTGGAGAAGTGC
TTGGACCTCACTTTCCCGCAAAAGGCGCGAAAGTTGTTTTTGGATAAGAC
GAACGCCTACGTCAAGCACTGCACGACGGCGCCGCCGACCGGTGAAGAAG
ACAAGCGGAAGCCACACCAGATGAAGAAGTCCGCCACGCTCGGTCGCGTC
ACGCTCGGGGAGCGGTCCGAGGAGCGCAACACCTACGGCATGTTCGAGGA
GCAGCACATCGACGGCATGATCGGCATTTTCATCACCATGGGCCTCACGA
AGAAAGTCCGGATGCGAAAGCACTGGAGCCGGTCCGCCCACGACAACTAC
CCGCTGGTCCAGAAGTGCATGTCGCGCGACGTGTTCGAGCTCTTGTACTG
CCGCTTCCTTCACTGCTCCGACCCCAACGCTCCGGAGCGACTGCTACCCG
ATGGCGAAGAAAACCCAGATTACGACTCCAAGTGGCATATCAGGGAGCTA
GAAGAGATCCTCAACACTGCATGGGCGGCGAACGTCGAGTGTGACAATTG
GTTGTCGTACGACGAGCAAATGATCAAGACTGTTTCGAAGTACTCGAGCA
AGGTTTCTTTCTACTGCCCGGCGAAGCCCATCAAGCACGGTGGAATCGAC
CACTTCAAGCCTTTGCCTCTATCACTGAGAGCGAAGGGCCGCAACGGGGA
ACCTCTGGATTTGCAGCAGCCTTGGACGCGTATGGATTACTTTCTGAACA
TGTTGGGGGTGGATTTGGCCGACCAACAGAACGGGTCTCACACGCACGAC
CACAAGTCCTACACGAACTTCTGGCGCCGTGTGTATGACGCAAAGTTGGA
GCAGGCGCTGACCAACGCGTTTCTGATTTTTCGCAAGTGGGTAGAACTGT
TGATCAGAGAGGTAGAGCCCAAGAAGCCCATTACACCAGGGGGTGAGTTG
GAAGAGTTGGAGCTTGCGTCGACGGAGTTGGCGACACTGTCGAAGGTAGA
GCGGGCTGTGTGGGATGAACAGATGGCAACGCTCCTTATGGCGAAGTGTA
ACGTCGCGAGGCCCAACAAGGGTGGGAGGCGTCCGGCCTCGGACAACAAG
CCGGCCGACCCCGTGTGGGGTAGCGTCACCCTCAAGAGTGGACGCCTGTG
CTTGAACCCTACTTGCAAGACGAGGTCGACGAAAGGGTGCTCGTGCAAGC
AATTTTGCACACGGGGGGATAAGTCTGGGGTTTTGATGTGCGAAACATGC
TGGAAGAGCCCGGAGTCTCACGAGCAGGCGGCGAAAGCTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1125_3a-0001

>EsuBft1125_3 ID=EsuBft1125_3|Name=EsuBft1125_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=474bp
MEDYETSDHFTRRNKMSKDIGRGVSLSAEARAALPSLDNFMSHQNPTSGE
FSLDLVLEKCLDLTFPQKARKLFLDKTNAYVKHCTTAPPTGEEDKRKPHQ
MKKSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRK
HWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPD
YDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCP
AKPIKHGGIDHFKPLPLSLRAKGRNGEPLDLQQPWTRMDYFLNMLGVDLA
DQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEP
KKPITPGGELEELELASTELATLSKVERAVWDEQMATLLMAKCNVARPNK
GGRRPASDNKPADPVWGSVTLKSGRLCLNPTCKTRSTKGCSCKQFCTRGD
KSGVLMCETCWKSPESHEQAAKAX

mRNA from alignment at Scaffold_133:651310..654731+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1125_3a-0001 ID=EsuBft1125_3a-0001|Name=EsuBft1125_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3422bp|location=Sequence derived from alignment at Scaffold_133:651310..654731+ (Ectocarpus subulatus male Bft15b)
TGGTGTGGACGGAAAGGGGGATGGAGGACTACGAAACGTCCGACCACTTC
ACGAGGCGCAACAAGATGTCAAAAGACATCGGGCGTGGAGTTTCGTTGTC
GGCAGAGGCTCGCGCCGCGCTGCCATCGTTGGACAACTTCATGTCGCACC
AGAACCCTACCAGCGGGGAGTTTTCGCTTGACCTCGTCTTGGAGAAGTGC
TTGGACCTCACTTTCCCGCAAAAGGCGCGAAAGTTGTTTTTGGATAAGGT
ATGTTAATTATGTTGTTTTGTTGCGACACGCGCCGCTTTGCTTTCATGTG
TCCCGTAGTGCGCGTGTGCGCGGAGTATTGAAACAGGAATTTCCAGTGCT
TGCAATGGTGAAACCGAATATGTACGATGAAGGTGCATAAACAACCCGAG
ACCTACCGCCCGCCCTCTCTTCGGTACCCATCCACCCCGCACAAAGTCGC
TGCCCCCCTGCTGCCGTGCGCCCAATAGCTCTGCCACGATTCTGAAATAG
CCTTGCACACGGCTTTGACTCGAAACCTGCCTCGAAACCCGCCCCCATCT
AACCTCCGTGTCTCTCTCCCCCACCCCGCCCCCGCTCCTCCGTTATTTTG
TGGGCAGACGAACGCCTACGTCAAGCACTGCACGACGGCGCCGCCGACCG
GTGAAGAAGACAAGCGGAAGCCACACCAGATGAAGAAGTCCGCCACGCTC
GGTCGCGTCACGCTCGGGGAGCGGTCCGAGGAGCGCAACACCTACGGCAT
GTTCGAGGAGCAGCACATCGACGGCATGATCGGCATTTTCATCACCATGG
GCCTCACGAAGAAAGTCCGGATGCGAAAGCACTGGAGCCGGTCCGCCCAC
GACAACTACCCGCTGGTCCAGAAGTGCATGTCGCGCGACGTGTTCGAGCT
CTTGTACTGCCGCTTCCTTCACTGCTCCGACCCCAACGCTCCGGAGCGAC
TGCTACCCGATGGCGAAGAAAACCCAGATTACGACTCCAAGTGGCATATC
AGGTGTCTTCGTTTTCAATCTGTGTGTCCTGTTGAAAACCTGGGGTGTCG
ATTTCGTTTGGGTCTCGTCGTTTCGGTTTTGTTGCAGTTGGGATGGTGGG
GGCGGGACAGACGTGGGTCGAAGGGTACCGAAGCCACCCGGAAAGTCGAA
GATTCTCCCCCGTCTACGGCGCCGCTATTTCATGTGCGGGCCGTATGGTT
TGTTTTTGGTTTGCTGGCAGTGAAGTTTGGCACATGCACGCTCTATGAGT
AGAGGTTTCTTCCGTCGAGTACATCACCCGACACTCAATATTGTCTTGTA
GTCGTCCTGGTACAGTAGATAGAAATGACAAATGACGAGCGTGTTCCTGC
CGGTAACGGCCCACCTTTAAAGTGCTGTGTTTCTGGTGCTCTTCCCTGTC
TGGCAGGGAGCTAGAAGAGATCCTCAACACTGCATGGGCGGCGAACGTCG
AGTGTGACAATTGGTTGTCGTACGACGAGCAAATGATCAAGACTGTTTCG
AAGTACTCGAGCAAGGTTTCTTTCTACTGCCCGGCGAAGCCCATCAAGCA
CGGTGAGCATGCGCACGCATTTGAAAGCTTGTATCACGAAAGGGGTCTCC
GAGAGTAGTTTGACCGTGGTACACGTGAACAATCCGATGTGTTTCTTGTC
AAAAGTAGAGAGAGGTAGGGGTTGAGGGGGGCCGTCGAGTTGGGTGGTGG
CACTTATCCACGCCCCGGTGCGGCGTTTTCCCGCTTCTTCCACAACGCCA
TTTCTTTTTCTGTACATCAGTGATCGCAGACTCCGGCAATCATTGATACG
CCTTGGTGTCAACAGCTGCTGGTTCCAACATTATTTTTATTTTGTTGGCC
TTCCGACACAACATTAGTCTTACCACAGCTGGTCCCTTCGGCCTCCCTGT
CGGCGGACGTTCGTCCGTTTTTTTCTTGATGTGTGCCAGGCATGAAGCTA
CTAGCGGCGTGCGATATCACGGGCTACTGCTTAACCAGCAGCGTGGATGG
CGGCATGAAAGGTGACCCCAAGCTTCGCCCTTAGATGGACTGCCCGCTCG
GCCGGACTACTCGCCACTTGCTTCACGTTCTGTTGGGGGAGTGCGGCGTG
TTGAGGCAGAAGATCGATGGCTCGGGGGTATTCATCGCCATGGACAACTA
CTTCACCTCCCCCACTCTGTTCGAGTGCCTCGCCTCCCACGACATCTTCG
CTGTAGGTACCTGCCGCGCCGATCGGACTGCCGGCGCTGATGCGTACCTC
GAGAGCCTCGGGCGTACCATTCCTAACCGCGGCGACATGACTCCTGCCGT
TCGGGGCAAGTGGCGTGCGTGCAGTGGGCTGACTCCTAGGATGTCTTCCT
CATCAGCACCATCCACGTCGCGCAACCGGCCAAGGGAAAGGAGGAGGCAG
GTGGAATCGACCACTTCAAGCCTTTGCCTCTATCGTGAGTCTGACTAGTG
TTCTTCTTGACTTTTTTCTGGTTAGCATGTTGTCTACGCTGGTATTGTCT
GGACGCACGAGCACGAGTGCATCCGCGGGGGGTGCGGGGTAGGGGGGAAC
GGGGTGCTTTTAAGAGACTCAGTACATTCGCAGCCGGAGTCGGATACTGT
GTCGTGCTACCTCTGTTGACGGTGGTCGTCCTTGTGCTCAAGCCTGTGCC
CCACATCCATGCACCCCTTTTGCTCGCCAGCCTAAGCCTGTTCGTCCCTC
TTTTCACACGCAGCCCCCTCGCAACTTTACCCTGCGCGTCTTCTGTTGTG
CAGACTGAGAGCGAAGGGCCGCAACGGGGAACCTCTGGATTTGCAGCAGC
CTTGGACGCGTATGGATTACTTTCTGAACATGTTGGGGGTGGATTTGGCC
GACCAACAGAACGGGTCTCACACGCACGACCACAAGTCCTACACGAACTT
CTGGCGCCGTGTGTATGACGCAAAGTTGGAGCAGGCGCTGACCAACGCGT
TTCTGATTTTTCGCAAGTGGGTAGAACTGTTGATCAGAGAGGTAGAGCCC
AAGAAGCCCATTACACCAGGGGGTGAGTTGGAAGAGTTGGAGCTTGCGTC
GACGGAGTTGGCGACACTGTCGAAGGTAGAGCGGGCTGTGTGGGATGAAC
AGATGGCAACGCTCCTTATGGCGAAGTGTAACGTCGCGAGGCCCAACAAG
GGTGGGAGGCGTCCGGCCTCGGACAACAAGCCGGCCGACCCCGTGTGGGG
TAGCGTCACCCTCAAGAGTGGACGCCTGTGCTTGAACCCTACTTGCAAGA
CGAGGTCGACGAAAGGGTGCTCGTGCAAGCAATTTTGCACACGGGGGGAT
AAGTCTGGGGTTTTGATGTGCGAAACATGCTGGAAGAGCCCGGAGTCTCA
CGAGCAGGCGGCGAAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_133:651310..654731+

>EsuBft1125_3a-0001 ID=EsuBft1125_3a-0001|Name=EsuBft1125_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1422bp|location=Sequence derived from alignment at Scaffold_133:651310..654731+ (Ectocarpus subulatus male Bft15b)
ATGGAGGACTACGAAACGTCCGACCACTTCACGAGGCGCAACAAGATGTC
AAAAGACATCGGGCGTGGAGTTTCGTTGTCGGCAGAGGCTCGCGCCGCGC
TGCCATCGTTGGACAACTTCATGTCGCACCAGAACCCTACCAGCGGGGAG
TTTTCGCTTGACCTCGTCTTGGAGAAGTGCTTGGACCTCACTTTCCCGCA
AAAGGCGCGAAAGTTGTTTTTGGATAAGACGAACGCCTACGTCAAGCACT
GCACGACGGCGCCGCCGACCGGTGAAGAAGACAAGCGGAAGCCACACCAG
ATGAAGAAGTCCGCCACGCTCGGTCGCGTCACGCTCGGGGAGCGGTCCGA
GGAGCGCAACACCTACGGCATGTTCGAGGAGCAGCACATCGACGGCATGA
TCGGCATTTTCATCACCATGGGCCTCACGAAGAAAGTCCGGATGCGAAAG
CACTGGAGCCGGTCCGCCCACGACAACTACCCGCTGGTCCAGAAGTGCAT
GTCGCGCGACGTGTTCGAGCTCTTGTACTGCCGCTTCCTTCACTGCTCCG
ACCCCAACGCTCCGGAGCGACTGCTACCCGATGGCGAAGAAAACCCAGAT
TACGACTCCAAGTGGCATATCAGGGAGCTAGAAGAGATCCTCAACACTGC
ATGGGCGGCGAACGTCGAGTGTGACAATTGGTTGTCGTACGACGAGCAAA
TGATCAAGACTGTTTCGAAGTACTCGAGCAAGGTTTCTTTCTACTGCCCG
GCGAAGCCCATCAAGCACGGTGGAATCGACCACTTCAAGCCTTTGCCTCT
ATCACTGAGAGCGAAGGGCCGCAACGGGGAACCTCTGGATTTGCAGCAGC
CTTGGACGCGTATGGATTACTTTCTGAACATGTTGGGGGTGGATTTGGCC
GACCAACAGAACGGGTCTCACACGCACGACCACAAGTCCTACACGAACTT
CTGGCGCCGTGTGTATGACGCAAAGTTGGAGCAGGCGCTGACCAACGCGT
TTCTGATTTTTCGCAAGTGGGTAGAACTGTTGATCAGAGAGGTAGAGCCC
AAGAAGCCCATTACACCAGGGGGTGAGTTGGAAGAGTTGGAGCTTGCGTC
GACGGAGTTGGCGACACTGTCGAAGGTAGAGCGGGCTGTGTGGGATGAAC
AGATGGCAACGCTCCTTATGGCGAAGTGTAACGTCGCGAGGCCCAACAAG
GGTGGGAGGCGTCCGGCCTCGGACAACAAGCCGGCCGACCCCGTGTGGGG
TAGCGTCACCCTCAAGAGTGGACGCCTGTGCTTGAACCCTACTTGCAAGA
CGAGGTCGACGAAAGGGTGCTCGTGCAAGCAATTTTGCACACGGGGGGAT
AAGTCTGGGGTTTTGATGTGCGAAACATGCTGGAAGAGCCCGGAGTCTCA
CGAGCAGGCGGCGAAAGCTTNN