Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1006_6 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 130 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1006_6a-0001 ID=EsuBft1006_6a-0001|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1303bp|location=Sequence derived from alignment at Scaffold_472:61364..63536- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCTCTCGAGTGCGACCCGGAGTGGTTGTTTCTGCGTTTGTATTGACGACA
GGAAGGTCACCCCGGCGGCGATGCAGGAGGCCCGCCGCCTGTTGGAGAAC
CCCCGCGAGTTGCACGGTCTCCGGAACAAGGCTCTGGACCACCCCCGAGT
CTGCCGGGGCACCAGATCGGCGGAGGACCTCGACCGCCAACAGCTCCGCA
ACCTGGCCGCCACCCTACCCGACAACGGCCTTGTCAAAATCCTCAGGTTC
TCCCTCGGCGACCTTGCGGGCGCTAGAGAGAGCGTGTGCCGAGGCGGAGC
TGCAGGGGCCGGTGGAGTTGAGCAAATTCGTCGGCGACCGGGGTGTCGAT
GCGCCGGTAGTTCACGACCTCCCGGCGTTCGCCGGCGACCCGGCTGCCTG
GACAGCTCCGATCCTCTTGGAAGCAGGGGATGTGCCTTCAGAGCTGGCGT
CGGTTGGGAGGCGGAAGGCGTTTCGTCTACTGGGGCCGCCCACCAGAGCA
CGGCTCTCCGCGACGCCAAAGCTCTGGAGAGCACCGCGCGGGGGGACCTG
GAGCTGCATCGAGCATGCCCCAACGGGGGAACGGTCACCGACACGCGCGT
CGGCGAGATGATGCTGGATTTTCTATGCGAAGCGATCGAGATTCACGCCG
CGGCGAACGGAGGGCCTACGGTGAACGGCATGCGGCGGTGTGACGAGCTG
GAGGAGGCGCGCGACCAGGGCTTCCCCAAATCCGCGAGGTGGCGGGGCGC
GTGGGGCGGGAGGTTCGGGGCAAAAACGTCCGGACCCGAGACAACTGCGC
CGCTGGAGGTGAACGGCATCCGGCGATGTGACGAGCTGGAGGAGGCGCAC
GACCAGGGGCTTCTCGAAATCCGCGAGGTGGCGGGGCGCGTGGGGCGGGA
GGTTCGGGGCCAACACGTCCGGACCCGAGACGACTGCGCCGCTGGAAGTA
ACGCAAGCTGGACCGGCCGCTCGCAGGGGGTCAACGAGGAGGAGGCCGAG
GCAGCCAAGCGGGAGGCTAAGGCGGTCCATGCTCCGGCGCCGGAGGAGGA
GAAAGCCAAAACGGCGCAAGCCTTTGGAGCAGCGACCAACCGCGTGGAGA
TGGCCAAGACCGCCAAGAAGTGCCGGGGCACGGGCGGTAAGATTGCCGCC
GGCGTTGCATTCGTTCGGACCGGGATCCTATTCGTTGTGCATATGCTGTT
GCTGCTGTTCTGGGTCGTTGATGTTGATGATGTTAATGATGATGATGCTA
AGAGGGCCTTGCTCAAGAACGATTTCGGTTGACTCCTTGCACCAGACCGC
CCC back to topprotein sequence of EsuBft1006_6a-0001 >EsuBft1006_6 ID=EsuBft1006_6|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=403bp
MQEARRLLENPRELHGLRNKALDHPRVCRGTRSAEDLDRQQLRNLAATLP
DNGLVKILRFSLGDLAGARESVCRGGAAGAGGVEQIRRRPGCRCAGSSRP
PGVRRRPGCLDSSDPLGSRGCAFRAGVGWEAEGVSSTGAAHQSTALRDAK
ALESTARGDLELHRACPNGGTVTDTRVGEMMLDFLCEAIEIHAAANGGPT
VNGMRRCDELEEARDQGFPKSARWRGAWGGRFGAKTSGPETTAPLEVNGI
RRCDELEEAHDQGLLEIREVAGRVGREVRGQHVRTRDDCAAGSNASWTGR
SQGVNEEEAEAAKREAKAVHAPAPEEEKAKTAQAFGAATNRVEMAKTAKK
CRGTGGKIAAGVAFVRTGILFVVHMLLLLFWVVDVDDVNDDDAKRALLKN
DFG back to topmRNA from alignment at Scaffold_472:61364..63536- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1006_6a-0001 ID=EsuBft1006_6a-0001|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2173bp|location=Sequence derived from alignment at Scaffold_472:61364..63536- (Ectocarpus subulatus male Bft15b)
TCTCTCGAGTGCGACCCGGAGTGGTTGTTTCTGCGTTTGTATTGACGACA
GGAAGGTCACCCCGGCGGCGATGCAGGAGGCCCGCCGCCTGTTGGAGAAC
CCCCGCGAGTTGCACGGTCTCCGGAACAAGGCTCTGGACCACCCCCGAGT
CTGCCGGGGCACCAGATCGGCGGAGGACCTCGACCGCCAACAGCTCCGCA
ACCTGGCCGCCACCCTACCCGACAACGGCCTTGTCAAAATCCTCAGGTTC
TCCCTCGGCGACCTTGCGGGCGCTAGAGAGAGCGTGTGCCGAGGCGGAGC
TGCAGGGGCCGGTGGAGTTGAGCAAATTCGTCGGCGACCGGGGTGTCGAT
GCGCCGGTAGTTCACGACCTCCCGGCGTTCGCCGGCGACCCGGCTGCCTG
GACAGCTCCGATCCTCTTGGAAGCAGGGGATGTGCCTTCAGTATCAGAGG
CGCGCGTTCCTACCACAATGAACCCATCGCCACCACCACACCAGTGGGAA
GGTGTCCCAAGCGGCCAGCAACGTCTCGTCCTTCGAGGGTGGGTCGGTCG
ACACTGTTCCAGTGTCGGTCCCGCGCCCAGCCTGGGCGATGTCCCCACCA
CCTGTACACCCCGACACCAGGAGCCGCGGTGAAGTAGTGAAGGAAAGACC
GAGCCCGGACGAGCGTGCGACCACTACGGCTGCTTGACGGAATTCGAGGC
GTAGCTGTGACAGCGCAGCGCAGTGGGGGGTCGCGGACACCGAGGACTCG
TTCCGATCCCCCTCCACCTCCACGCAGGATGCCCCCAGTCGTTTTTCGTG
CCCGGCCGGTCCACCCTCGAAGACGAGACGTTGCTGGCCGCTTGGGACAT
CTTCACGGTCGTGCAGGAGCTGGCGTCGGTTGGGAGGCGGAAGGCGTTTC
GTCTACTGGGGCCGCCCACCAGAGCACGGCTCTCCGCGACGCCAAAGCTC
TGGAGAGCACCGCGCGGGGGGACCTGGAGCTGCATCGAGCATGCCCCAAC
GGGGGAACGGTCACCGACACGCGCGTCGGCGAGATGATGCTGGATTTTCT
ATGCGAAGCGATCGAGATTCACGCCGCGGCGAACGGAGGGCCTACGGTGA
ACGGCATGCGGCGGTGTGACGAGCTGGAGGAGGCGCGCGACCAGGGCTTC
CCCAAATCCGCGAGGTGGCGGGGCGCGTGGGGCGGGAGGTTCGGGGCAAA
AACGTCCGGACCCGAGACAACTGCGCCGCTGGAGGTATGTACGTATAGCA
GTTGGTATATCGGAGCANCGGGCCTAAGGTGAACGGCATCCGGCGATGTG
ACGAGCTGGAGGAGGCGCACGACCAGGGGCTTCTCGAAATCCGCGAGGTG
GCGGGGCGCGTGGGGCGGGAGGTTCGGGGCCAACACGTCCGGACCCGAGA
CGACTGCGCCGCTGGAAGTATGTACGTATAGCAGTCGGTATCTCGGAGCA
ACCGACGGTTTGTTGCTCCTGTTGCTGCTGATGTTGTTGTTGTTGATGTT
GTTGATGTTGTTGTTGATGATGATGATTGAACGGCCTTGTTCGAGATCGA
TTCTCGCATAGCTCCAAAGATAGGACTAGGTCGTGGTGGCGCCAACCTCT
GCGTTACCCCGCTCACCGCCGCCCCGTCCGCCCCGCCCCCACTGCCCCTC
TTGTGTTTTCGATTGGCGGCGGTTTGGTTGAAACGTTATCAAGTAGGTGT
CGGTGTGGAGGATTGTCGTTGTTGCTGCCGTCTATTTCCTTGTTTGTTTC
TGCGTTAAGGATTGCTCTCGTTTCTCCTTGTTCGGTCTTCGTCTGCGCCA
TGCATCCAAACCCGTAGGTAACGCAAGCTGGACCGGCCGCTCGCAGGGGG
TCAACGAGGAGGAGGCCGAGGCAGCCAAGCGGGAGGCTAAGGCGGTCCAT
GCTCCGGCGCCGGAGGAGGAGAAAGCCAAAACGGCGCAAGCCTTTGGAGC
AGCGACCAACCGCGTGGAGATGGCCAAGACCGCCAAGAAGTGCCGGGGCA
CGGGCGGTAAGATTGCCGCCGGCGTTGCATTCGTTCGGACCGGGATCCTA
TTCGTTGTGCATATGCTGTTGCTGCTGTTCTGGGTCGTTGATGTTGATGA
TGTTAATGATGATGATGCTAAGAGGGCCTTGCTCAAGAACGATTTCGGTT
GACTCCTTGCACCAGACCGCCCC back to topCoding sequence (CDS) from alignment at Scaffold_472:61364..63536- >EsuBft1006_6a-0001 ID=EsuBft1006_6a-0001|Name=EsuBft1006_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1212bp|location=Sequence derived from alignment at Scaffold_472:61364..63536- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGGCCCGCCGCCTGTTGGAGAACCCCCGCGAGTTGCACGGTCT
CCGGAACAAGGCTCTGGACCACCCCCGAGTCTGCCGGGGCACCAGATCGG
CGGAGGACCTCGACCGCCAACAGCTCCGCAACCTGGCCGCCACCCTACCC
GACAACGGCCTTGTCAAAATCCTCAGGTTCTCCCTCGGCGACCTTGCGGG
CGCTAGAGAGAGCGTGTGCCGAGGCGGAGCTGCAGGGGCCGGTGGAGTTG
AGCAAATTCGTCGGCGACCGGGGTGTCGATGCGCCGGTAGTTCACGACCT
CCCGGCGTTCGCCGGCGACCCGGCTGCCTGGACAGCTCCGATCCTCTTGG
AAGCAGGGGATGTGCCTTCAGAGCTGGCGTCGGTTGGGAGGCGGAAGGCG
TTTCGTCTACTGGGGCCGCCCACCAGAGCACGGCTCTCCGCGACGCCAAA
GCTCTGGAGAGCACCGCGCGGGGGGACCTGGAGCTGCATCGAGCATGCCC
CAACGGGGGAACGGTCACCGACACGCGCGTCGGCGAGATGATGCTGGATT
TTCTATGCGAAGCGATCGAGATTCACGCCGCGGCGAACGGAGGGCCTACG
GTGAACGGCATGCGGCGGTGTGACGAGCTGGAGGAGGCGCGCGACCAGGG
CTTCCCCAAATCCGCGAGGTGGCGGGGCGCGTGGGGCGGGAGGTTCGGGG
CAAAAACGTCCGGACCCGAGACAACTGCGCCGCTGGAGGTGAACGGCATC
CGGCGATGTGACGAGCTGGAGGAGGCGCACGACCAGGGGCTTCTCGAAAT
CCGCGAGGTGGCGGGGCGCGTGGGGCGGGAGGTTCGGGGCCAACACGTCC
GGACCCGAGACGACTGCGCCGCTGGAAGTAACGCAAGCTGGACCGGCCGC
TCGCAGGGGGTCAACGAGGAGGAGGCCGAGGCAGCCAAGCGGGAGGCTAA
GGCGGTCCATGCTCCGGCGCCGGAGGAGGAGAAAGCCAAAACGGCGCAAG
CCTTTGGAGCAGCGACCAACCGCGTGGAGATGGCCAAGACCGCCAAGAAG
TGCCGGGGCACGGGCGGTAAGATTGCCGCCGGCGTTGCATTCGTTCGGAC
CGGGATCCTATTCGTTGTGCATATGCTGTTGCTGCTGTTCTGGGTCGTTG
ATGTTGATGATGTTAATGATGATGATGCTAAGAGGGCCTTGCTCAAGAAC
GATTTCGGTTGA back to top
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