EsuBft1006_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1006_11a-0001
Unique NameEsuBft1006_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:110..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LBB2
ProteomeIdEsuBft1006_11
Protein domainsIPR014044
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length29
Hectar predicted targeting categoryother localisation
Evalue1.33e-46
EggNOG OGsCOG2340@1|root,KOG3017@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionpeptidase inhibitor activity
COG categoryADK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_11aEsuBft1006_11aEctocarpus subulatus male Bft15bgeneScaffold_472 110..865 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_11a-0001-exonagat-exon-51677Ectocarpus subulatus male Bft15bexonScaffold_472 110..113 -
EsuBft1006_11a-0001-exonagat-exon-51679Ectocarpus subulatus male Bft15bexonScaffold_472 295..302 -
EsuBft1006_11a-0001-exonEsuBft1006_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 443..715 -
EsuBft1006_11a-0001-exonagat-exon-51678Ectocarpus subulatus male Bft15bexonScaffold_472 860..865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_11a-0001-cdsEsuBft1006_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 110..113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_11a-0001EsuBft1006_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 110..865 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1006_11a-0001 ID=EsuBft1006_11a-0001|Name=EsuBft1006_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=291bp|location=Sequence derived from alignment at Scaffold_472:110..865- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGACTGTGAGCTCGGGTGGCAGCAGCAGCACCACCAGCAGCAACAC
CAGGAGAAGCCTGGACGAGTCCGAGGTGCTTTGCTGCATTAACGAATACC
GCAGGGAGCACGGAGCCCCGATGCTGAGGTGGAGCTCGGCGTGCGCCCGC
GAAGCTCAGCGGCGAGCCAGCCACGAGTCCGGGCCGAGCGCCGAGTATGG
CGAGAATCTTGCCAGGAGCACGGATCATAGCTGGAGAGATCCAACGATAG
CTTGTATCGGCTCCATCCACCGGTGGCAGGTACGTGGTTAG
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protein sequence of EsuBft1006_11a-0001

>EsuBft1006_11 ID=EsuBft1006_11|Name=EsuBft1006_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MWTVSSGGSSSTTSSNTRRSLDESEVLCCINEYRREHGAPMLRWSSACAR
EAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQVRG
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mRNA from alignment at Scaffold_472:110..865-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1006_11a-0001 ID=EsuBft1006_11a-0001|Name=EsuBft1006_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=756bp|location=Sequence derived from alignment at Scaffold_472:110..865- (Ectocarpus subulatus male Bft15b)
ATGTGGGTGACAAAATCGAACCTGACTACTTTTGTTGCGGAACTGCTGTA
GCCGGGGGTCGTAGTGGCGGCAGAGGTCGCAGCGGCGATACATTGGACCA
CCTAGCTGTGCTTGACCAGCAAGTCCTCTCTTTGTGCCGTGTGTCCACAG
ACTGTGAGCTCGGGTGGCAGCAGCAGCACCACCAGCAGCAACACCAGGAG
AAGCCTGGACGAGTCCGAGGTGCTTTGCTGCATTAACGAATACCGCAGGG
AGCACGGAGCCCCGATGCTGAGGTGGAGCTCGGCGTGCGCCCGCGAAGCT
CAGCGGCGAGCCAGCCACGAGTCCGGGCCGAGCGCCGAGTATGGCGAGAA
TCTTGCCAGGAGCACGGATCATAGCTGGAGAGATCCAACGATAGCTTGTA
TCGGCTCCATCCACCGGTGGCAGGTACGTCGTGCTGCTGAACGCCGCAGA
AAATTCTGGGAGATCACGCACACCGGTCCTCGCGTCTCTCACCCATGCAT
GTGCAAGAAACCCCGAACGAACCCCGTGTTCCACTCGGAACATAGAAGCT
GGTATATATACAGGTACGTGGGTATGTGCAAATAATGCATGCATTGAGCT
TGGGTCCGACTTTTGCCGGGGGCAATACCAGGGTGGGAAAAGTGTTCGGG
GCTTCGGGGCGGCGCCGAATTTCGCAGAAAATGGCGCAGCGCCGAAATTT
TTTTGGGTACAAGCAGCTTCAATTATTTCGGGGCAAAGCCGCTACAACGC
AGTTAG
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Coding sequence (CDS) from alignment at Scaffold_472:110..865-

>EsuBft1006_11a-0001 ID=EsuBft1006_11a-0001|Name=EsuBft1006_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_472:110..865- (Ectocarpus subulatus male Bft15b)
ATGTGGACTGTGAGCTCGGGTGGCAGCAGCAGCACCACCAGCAGCAACAC
CAGGAGAAGCCTGGACGAGTCCGAGGTGCTTTGCTGCATTAACGAATACC
GCAGGGAGCACGGAGCCCCGATGCTGAGGTGGAGCTCGGCGTGCGCCCGC
GAAGCTCAGCGGCGAGCCAGCCACGAGTCCGGGCCGAGCGCCGAGTATGG
CGAGAATCTTGCCAGGAGCACGGATCATAGCTGGAGAGATCCAACGATAG
CTTGTATCGGCTCCATCCACCGGTGGCAGGTACGTGGTTAG
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