EsuBft942_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft942_7a-0001
Unique Name	EsuBft942_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_467	contig	Scaffold_467:71582..73744 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft942_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	195
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft942_7a	EsuBft942_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_467 71582..73744 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_7a-0001-exon	EsuBft942_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 71582..72034 +
EsuBft942_7a-0001-exon	agat-exon-44846	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 72241..73744 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_7a-0001-cds	EsuBft942_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_467 71582..72034 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_7a-0001-exon	agat-three_prime_utr-23325	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_467 72760..73744 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_7a-0001	EsuBft942_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_467 71582..72759 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_467:71582..73744+
coding sequence from alignment at Scaffold_467:71582..73744+

spliced messenger RNA

>EsuBft942_7a-0001 ID=EsuBft942_7a-0001|Name=EsuBft942_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1957bp|location=Sequence derived from alignment at Scaffold_467:71582..73744+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTTGTTCGACATCCAGGACCAGCACCATCATCGAGCAGGGGCCA
GGCCATCGTCCTCCACGCGCCCGAGAAGCCCGGCCTCAACGCCGGCGAGC
ATCCTTTTCCACTTGCCGTCCTTGGTCTCACGGTTCTCCCTGACCATCTT
CCCGATGACCAGCACCGTCTCCTTTCGGGAGTCCGCGATGGCGCTCTTGG
CCAACTGCTTCTTCACGTCGGCAGCTTGCTTCTTCATCTCGGCAGCTTGC
TTCTTCAGCTGGAGGACGTCTTCGCGGACGGAGGCGATGGTGGAAGGCGT
GTCACCAAGCTCGTCCTCCACGCTACCCAGAAGCCTAGCCTCAACGCCCT
CGAGCTTCTTCTGCCACTTGCCATCCTTGGTCTCCCGGGTCTCTTTGACT
ATCTGCCTAATGGCCAGCACCTAAAGGAGACGGTGCTGGCCATCGGGAAG
ATGCTTGACCTGCCCCATCTGCAATTGCTCGGTGCCGCAGCGGAATACCT
CGTCCATCTCCGCCTTCTCCATGGCAGTAGGCATGTCGGTGTCGGCAGCT
TGCTTCTTGAGCTGGAGGACGTCTTCCAGGGGGCCCAGGAGGTCCTCACG
GCCAAAATCTACCTCAAGGACAACGCCGACGCCCTCGGATCTATCCTCCT
GACGGTTCAGAATAAGATCTTCACTCCGCGCAAGTTGCGGATCTTCTGCA
ACTTGAGTTGCGGTGTTGCAGACCTTTTGCAACTTGCGCGGAGTCAAGAT
CTTGTTCTGAACCGTCAGGAGGACAGATCCGAGCGCGCCGGCGTTGTCCT
TGAAGTAGATTTTGGCAGTGGGAATCTCCCGGATACCCTGCTGCATTCTC
GCCATCTCCTCAGCCGGGACCTTACGGGCCGGAACAAAGTCATGACTCCG
CACAAGTTGCAGAAGGTCCTGTACGAGATGAACGAGAGAGCGGAGGAGTC
CACCATGGTGTGGGGCGAATAGTCCAACTTCGGCGAAGTCTTAGCCAATT
GGAAGGTCGGACACAAGCGCCCAAGGCAGACTGGGGGGGCGACGACGAGG
AGGGGGAGGAGAAGGCGGGCGGCAAACCCTCAGGGCCGCCCCAGACGACC
AGGAGGGCAAGACGCGGGGGTAGCGAGTAGAATCGGAGGGAGAGAGAGAG
GGAGTGGGAGATGACAGAAGTGCCGCCAAAGGATCGAACGCATGTCCGGG
GGAGGGGAGGGGGGACAGGGTTTCTCCGCCGGCACCTTAAGCGGCAGCAG
GTTGTTGTTGTTGCAATTGTTCTTGGCAGTAAGCTTGCTCTCGAAGGCGT
TGAGCGAGGTGTCGATTCATCCGACCCTTTGCCCCGCCTTTGATGATGCG
GTTTACTGTCAAGCCATGGCAGTTGTACAGCTATAGCATGGTCCACTATT
TAGTGGGTTTGCTTTCGACGGATGTGGCACGGATTACTACGTATTCGTAT
TTTAGAGGTTCTTGATGCCTGTCCCCGATGATGTATTCCCGTGAACGGCA
AAACTCGAGCCCATGACCAACTAGATTGCTTCCACGTTAAAGACTTTTTT
CCCTCTCTGCCCTGTTTTCGTGTTTTTTTTGGGGGGGGCAATCGGGCACA
TGTATTTTTGTTTCATCCCTCACTTCACGCTGAAGGGGTTGCGGCGAGAG
GAGCATTGTGGTTCCAGCTTGCGTCTGTTCTTGATTCGATCTCAAGGACT
GTGGGGGTGTGTGCCTGCGGGCTCTTTCTTGCCTGCCTGGTTGATGCTGC
GTTTCGTGCCACACCGCAGGGGTCACGTGGTGTTGACTTGGCTTTTTGCT
TGCGCGCATGGATTGTAGAAAAGGTACCCCGGTGTTGTGCTGCCACAATT
TTGTGGTAATTTGTTTTTGCTCCGGCCCTTGGCAGTGTGACGAGGAATGC
AATCTGACTTGGTGGCATGAAGCATTCAAGGAAACAAGAATGATAATCAA
AGTAATC

protein sequence of EsuBft942_7a-0001

>EsuBft942_7 ID=EsuBft942_7|Name=EsuBft942_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=323bp
MSVVRHPGPAPSSSRGQAIVLHAPEKPGLNAGEHPFPLAVLGLTVLPDHL
PDDQHRLLSGVRDGALGQLLLHVGSLLLHLGSLLLQLEDVFADGGDGGRR
VTKLVLHATQKPSLNALELLLPLAILGLPGLFDYLPNGQHLKETVLAIGK
MLDLPHLQLLGAAAEYLVHLRLLHGSRHVGVGSLLLELEDVFQGAQEVLT
AKIYLKDNADALGSILLTVQNKIFTPRKLRIFCNLSCGVADLLQLARSQD
LVLNRQEDRSERAGVVLEVDFGSGNLPDTLLHSRHLLSRDLTGRNKVMTP
HKLQKVLYEMNERAEESTMVWGE

mRNA from alignment at Scaffold_467:71582..73744+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft942_7a-0001 ID=EsuBft942_7a-0001|Name=EsuBft942_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2163bp|location=Sequence derived from alignment at Scaffold_467:71582..73744+ (Ectocarpus subulatus male Bft15b)
ATGTCCGTTGTTCGACATCCAGGACCAGCACCATCATCGAGCAGGGGCCA
GGCCATCGTCCTCCACGCGCCCGAGAAGCCCGGCCTCAACGCCGGCGAGC
ATCCTTTTCCACTTGCCGTCCTTGGTCTCACGGTTCTCCCTGACCATCTT
CCCGATGACCAGCACCGTCTCCTTTCGGGAGTCCGCGATGGCGCTCTTGG
CCAACTGCTTCTTCACGTCGGCAGCTTGCTTCTTCATCTCGGCAGCTTGC
TTCTTCAGCTGGAGGACGTCTTCGCGGACGGAGGCGATGGTGGAAGGCGT
GTCACCAAGCTCGTCCTCCACGCTACCCAGAAGCCTAGCCTCAACGCCCT
CGAGCTTCTTCTGCCACTTGCCATCCTTGGTCTCCCGGGTCTCTTTGACT
ATCTGCCTAATGGCCAGCACCTAAAGGAGACGGTGCTGGCCATCGGGAAG
ATGGTAAAAGGAGAACGGGGAGACCAAGGATGGGAAGTGGCAGCAGAAGC
TCGACGGCGCTGAGGCCAAGCTTCTCGGTCGCGTGGAGGACGACCTTGGT
GACACGCCTGCCACCAGCACCGTTGGGCGTCGGCGTTGTCCTTGAGGTAG
ATTTTGGCCGTGAGGACCTCCTGGGCCCCCTGCTGCACTTCGGCCACGTC
CTCAGTCAGCTTGACCTGCCCCATCTGCAATTGCTCGGTGCCGCAGCGGA
ATACCTCGTCCATCTCCGCCTTCTCCATGGCAGTAGGCATGTCGGTGTCG
GCAGCTTGCTTCTTGAGCTGGAGGACGTCTTCCAGGGGGCCCAGGAGGTC
CTCACGGCCAAAATCTACCTCAAGGACAACGCCGACGCCCTCGGATCTAT
CCTCCTGACGGTTCAGAATAAGATCTTCACTCCGCGCAAGTTGCGGATCT
TCTGCAACTTGAGTTGCGGTGTTGCAGACCTTTTGCAACTTGCGCGGAGT
CAAGATCTTGTTCTGAACCGTCAGGAGGACAGATCCGAGCGCGCCGGCGT
TGTCCTTGAAGTAGATTTTGGCAGTGGGAATCTCCCGGATACCCTGCTGC
ATTCTCGCCATCTCCTCAGCCGGGACCTTACGGGCCGGAACAAAGTCATG
ACTCCGCACAAGTTGCAGAAGGTCCTGTACGAGATGAACGAGAGAGCGGA
GGAGTCCACCATGGTGTGGGGCGAATAGTCCAACTTCGGCGAAGTCTTAG
CCAATTGGAAGGTCGGACACAAGCGCCCAAGGCAGACTGGGGGGGCGACG
ACGAGGAGGGGGAGGAGAAGGCGGGCGGCAAACCCTCAGGGCCGCCCCAG
ACGACCAGGAGGGCAAGACGCGGGGGTAGCGAGTAGAATCGGAGGGAGAG
AGAGAGGGAGTGGGAGATGACAGAAGTGCCGCCAAAGGATCGAACGCATG
TCCGGGGGAGGGGAGGGGGGACAGGGTTTCTCCGCCGGCACCTTAAGCGG
CAGCAGGTTGTTGTTGTTGCAATTGTTCTTGGCAGTAAGCTTGCTCTCGA
AGGCGTTGAGCGAGGTGTCGATTCATCCGACCCTTTGCCCCGCCTTTGAT
GATGCGGTTTACTGTCAAGCCATGGCAGTTGTACAGCTATAGCATGGTCC
ACTATTTAGTGGGTTTGCTTTCGACGGATGTGGCACGGATTACTACGTAT
TCGTATTTTAGAGGTTCTTGATGCCTGTCCCCGATGATGTATTCCCGTGA
ACGGCAAAACTCGAGCCCATGACCAACTAGATTGCTTCCACGTTAAAGAC
TTTTTTCCCTCTCTGCCCTGTTTTCGTGTTTTTTTTGGGGGGGGCAATCG
GGCACATGTATTTTTGTTTCATCCCTCACTTCACGCTGAAGGGGTTGCGG
CGAGAGGAGCATTGTGGTTCCAGCTTGCGTCTGTTCTTGATTCGATCTCA
AGGACTGTGGGGGTGTGTGCCTGCGGGCTCTTTCTTGCCTGCCTGGTTGA
TGCTGCGTTTCGTGCCACACCGCAGGGGTCACGTGGTGTTGACTTGGCTT
TTTGCTTGCGCGCATGGATTGTAGAAAAGGTACCCCGGTGTTGTGCTGCC
ACAATTTTGTGGTAATTTGTTTTTGCTCCGGCCCTTGGCAGTGTGACGAG
GAATGCAATCTGACTTGGTGGCATGAAGCATTCAAGGAAACAAGAATGAT
AATCAAAGTAATC

Coding sequence (CDS) from alignment at Scaffold_467:71582..73744+

>EsuBft942_7a-0001 ID=EsuBft942_7a-0001|Name=EsuBft942_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=972bp|location=Sequence derived from alignment at Scaffold_467:71582..73744+ (Ectocarpus subulatus male Bft15b)
ATGTCCGTTGTTCGACATCCAGGACCAGCACCATCATCGAGCAGGGGCCA
GGCCATCGTCCTCCACGCGCCCGAGAAGCCCGGCCTCAACGCCGGCGAGC
ATCCTTTTCCACTTGCCGTCCTTGGTCTCACGGTTCTCCCTGACCATCTT
CCCGATGACCAGCACCGTCTCCTTTCGGGAGTCCGCGATGGCGCTCTTGG
CCAACTGCTTCTTCACGTCGGCAGCTTGCTTCTTCATCTCGGCAGCTTGC
TTCTTCAGCTGGAGGACGTCTTCGCGGACGGAGGCGATGGTGGAAGGCGT
GTCACCAAGCTCGTCCTCCACGCTACCCAGAAGCCTAGCCTCAACGCCCT
CGAGCTTCTTCTGCCACTTGCCATCCTTGGTCTCCCGGGTCTCTTTGACT
ATCTGCCTAATGGCCAGCACCTAAAGGAGACGGTGCTGGCCATCGGGAAG
ATGCTTGACCTGCCCCATCTGCAATTGCTCGGTGCCGCAGCGGAATACCT
CGTCCATCTCCGCCTTCTCCATGGCAGTAGGCATGTCGGTGTCGGCAGCT
TGCTTCTTGAGCTGGAGGACGTCTTCCAGGGGGCCCAGGAGGTCCTCACG
GCCAAAATCTACCTCAAGGACAACGCCGACGCCCTCGGATCTATCCTCCT
GACGGTTCAGAATAAGATCTTCACTCCGCGCAAGTTGCGGATCTTCTGCA
ACTTGAGTTGCGGTGTTGCAGACCTTTTGCAACTTGCGCGGAGTCAAGAT
CTTGTTCTGAACCGTCAGGAGGACAGATCCGAGCGCGCCGGCGTTGTCCT
TGAAGTAGATTTTGGCAGTGGGAATCTCCCGGATACCCTGCTGCATTCTC
GCCATCTCCTCAGCCGGGACCTTACGGGCCGGAACAAAGTCATGACTCCG
CACAAGTTGCAGAAGGTCCTGTACGAGATGAACGAGAGAGCGGAGGAGTC
CACCATGGTGTGGGGCGAATAG