EsuBft999_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft999_8a-0001
Unique Name	EsuBft999_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:22288..24272 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_008131-tr
ProteomeId	EsuBft999_8
Protein domains	SSF56672
Protein domains	PTHR10178
Protein domains	G3DSA
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	1746
Hectar predicted targeting category	other localisation
Evalue	1.67e-48
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft999_8a	EsuBft999_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 22288..24272 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_8a-0001-exon	agat-exon-91878	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 22288..22460 +
EsuBft999_8a-0001-exon	agat-exon-91879	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 22557..23802 +
EsuBft999_8a-0001-exon	EsuBft999_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 23946..24272 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_8a-0001-cds	EsuBft999_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 22288..22460 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_8a-0001	EsuBft999_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 22288..24272 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:22288..24272+
coding sequence from alignment at Scaffold_463:22288..24272+

spliced messenger RNA

>EsuBft999_8a-0001 ID=EsuBft999_8a-0001|Name=EsuBft999_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1746bp|location=Sequence derived from alignment at Scaffold_463:22288..24272+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTGCTACGAGGACGTGGTGTGGGAAGACGACACCTCCTTCGAGTG
GGACGTGAGACAAGTGCCGGAGACCACCGTCGTCGAGGGTTTCACCACTC
GCGCGGTGGAATCTGTGGCTGTGAGGCCACATCCGCTGGACAGGCAGCTA
GTGATGGTCTTGCCGACCGAGCGTGAGGAGAAGGTGACAGTCGAGGGTAG
CCGGGCGATAGCTCGCATGATAGCACTCAATGCTCGCGACAAGCCGGCTT
TCGATTCGCTGTTTGACACCGCCCCCTCTGCTTCCCACCCACCCTTGCCT
CCCCGTGGACCGCGCGCCCCGAGCCCGTCCCCATCTAATGGGACATCCAT
CCCGCGTGTTCGCGTGGAGGACGCCAACCTGGGGACGGCGGGGTCGCTCA
AGAAGCAGCAACTCGTCAACGTCCTCGCAGCGTTCATCGAGGACGGTCTG
TTTCCGCTCGACCCGAAGCGAGTGCCGGCTTGCATCAACGGTGAGTATGA
GCTTCCTCTGATCAACGAGTTTTGTACACCTTTCGCAGCCAAGCAACGGC
GTTTCGCTCCGGCAGGACGACGCATGATCAGGGCAGAGATTCAGCAGTTG
GTAGACCGAGGAGTGATCCGTCAATCCATGTCTCCGTGGGCTGCCCAGTG
CTTGTGCGTTAAGAAGAAGGATGGTACGCTGCGACTGTGCATCGACTGGC
GTGAACTCAACAAACTCTTGGTCTCCGATAGTGGGGGTTGGGGTGACATG
CAGACGATATTCGACGGGTTGAAGGGCAAGAAGTATTTCACGCAGCTAGA
CCTCGCCTCCGGTTTTCGCCAGATGGAAATCGCCGAGAAAGACCGTTACA
AGACGGCCTTTCGAGATGCGGATGGTATGCTTTGGGAATTTACTCGCGCG
GGTTTCGGCCTGACGGTGCTTGCGGCGGCCTTCACTCGTAGAGTAAAGTC
GGCTTGGGGGCATCTATCGGGCGTGTTTAGCTGGCTTGACGACATTGTCA
TCGCTAGCGACACATGGGAAGAACACGTCGCCACTCTGACGCTCGTTCTG
AACCGCCTTCTGGCTGCGGGGCTGTTCGTGAGCTTCGCGAAGTGCATTTT
CGGCGCAGCATCGCAGGAGTTCCTCGGCATGATCATCGACTGTACGGGCC
TGTACCCTGCTCCGTCTAAGCTAGCTAGATGCAATCGCAAGCATGCCTCG
CCCACACACCGTAGAAGAGCTGCGCACGTTTTTGGGCCTCACCGGCTACT
TGCGCGTCAGTTTGTTCCTCACTACAGTTTGGCTGCTGCTCCGCTCACCA
ACATCCTGCGCAACAAAGCCTTCGCTTCGAAACGTGCACGCAAGCTGAGG
AAGACGCCTTCCTGTCTTTACGAGCAACGTTGGCTTCCCCGAAAGTTCTC
GCTTTCCCTGACCTTGAGCGAAGGCATGGGGGTCTTGTGGGCGGTAGACC
ACTTCCGGCCGTACCTAGCGGTTAGACGGTTCAAACTTGTGACAGACTGT
TCTGCCCTCACATGGTTGTTCCGATGCCGTGAACTCTGCCCCAAGCTGCA
CAGGTGGGCGACGCGGCTGATGGAGTACGACATGGAGCTGGAATGGAAGG
CGGGAGTAGAGCACGCATTGCCCAATGCTTTGTCCCGGTTGACCGTTGCG
AACCCTGTAGTGGTCGACGTCGACGATTCGTTTCCGGATGATCTGTCGTC
CGCTGCTGCAGGAGCTTCGTTAGAGAGATCTCTGGACCGGAGTTGA

protein sequence of EsuBft999_8a-0001

>EsuBft999_8 ID=EsuBft999_8|Name=EsuBft999_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=581bp
MPCYEDVVWEDDTSFEWDVRQVPETTVVEGFTTRAVESVAVRPHPLDRQL
VMVLPTEREEKVTVEGSRAIARMIALNARDKPAFDSLFDTAPSASHPPLP
PRGPRAPSPSPSNGTSIPRVRVEDANLGTAGSLKKQQLVNVLAAFIEDGL
FPLDPKRVPACINGEYELPLINEFCTPFAAKQRRFAPAGRRMIRAEIQQL
VDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGWGDM
QTIFDGLKGKKYFTQLDLASGFRQMEIAEKDRYKTAFRDADGMLWEFTRA
GFGLTVLAAAFTRRVKSAWGHLSGVFSWLDDIVIASDTWEEHVATLTLVL
NRLLAAGLFVSFAKCIFGAASQEFLGMIIDCTGLYPAPSKLARCNRKHAS
PTHRRRAAHVFGPHRLLARQFVPHYSLAAAPLTNILRNKAFASKRARKLR
KTPSCLYEQRWLPRKFSLSLTLSEGMGVLWAVDHFRPYLAVRRFKLVTDC
SALTWLFRCRELCPKLHRWATRLMEYDMELEWKAGVEHALPNALSRLTVA
NPVVVDVDDSFPDDLSSAAAGASLERSLDRS

mRNA from alignment at Scaffold_463:22288..24272+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft999_8a-0001 ID=EsuBft999_8a-0001|Name=EsuBft999_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1985bp|location=Sequence derived from alignment at Scaffold_463:22288..24272+ (Ectocarpus subulatus male Bft15b)
ATGCCTTGCTACGAGGACGTGGTGTGGGAAGACGACACCTCCTTCGAGTG
GGACGTGAGACAAGTGCCGGAGACCACCGTCGTCGAGGGTTTCACCACTC
GCGCGGTGGAATCTGTGGCTGTGAGGCCACATCCGCTGGACAGGCAGCTA
GTGATGGTCTTGCCGACCGAGCGGTTTGATTAAGAGTAGGGAGCTGTAGT
GGGAATAGCTCGTGCGGTAATGTGGTGGGTTCCGGGGTCGCCTGTTTGCT
GCAAGTTGGTGAACCGTAGTGAGGAGAAGGTGACAGTCGAGGGTAGCCGG
GCGATAGCTCGCATGATAGCACTCAATGCTCGCGACAAGCCGGCTTTCGA
TTCGCTGTTTGACACCGCCCCCTCTGCTTCCCACCCACCCTTGCCTCCCC
GTGGACCGCGCGCCCCGAGCCCGTCCCCATCTAATGGGACATCCATCCCG
CGTGTTCGCGTGGAGGACGCCAACCTGGGGACGGCGGGGTCGCTCAAGAA
GCAGCAACTCGTCAACGTCCTCGCAGCGTTCATCGAGGACGGTCTGTTTC
CGCTCGACCCGAAGCGAGTGCCGGCTTGCATCAACGGTGAGTATGAGCTT
CCTCTGATCAACGAGTTTTGTACACCTTTCGCAGCCAAGCAACGGCGTTT
CGCTCCGGCAGGACGACGCATGATCAGGGCAGAGATTCAGCAGTTGGTAG
ACCGAGGAGTGATCCGTCAATCCATGTCTCCGTGGGCTGCCCAGTGCTTG
TGCGTTAAGAAGAAGGATGGTACGCTGCGACTGTGCATCGACTGGCGTGA
ACTCAACAAACTCTTGGTCTCCGATAGTGGGGGTTGGGGTGACATGCAGA
CGATATTCGACGGGTTGAAGGGCAAGAAGTATTTCACGCAGCTAGACCTC
GCCTCCGGTTTTCGCCAGATGGAAATCGCCGAGAAAGACCGTTACAAGAC
GGCCTTTCGAGATGCGGATGGTATGCTTTGGGAATTTACTCGCGCGGGTT
TCGGCCTGACGGTGCTTGCGGCGGCCTTCACTCGTAGAGTAAAGTCGGCT
TGGGGGCATCTATCGGGCGTGTTTAGCTGGCTTGACGACATTGTCATCGC
TAGCGACACATGGGAAGAACACGTCGCCACTCTGACGCTCGTTCTGAACC
GCCTTCTGGCTGCGGGGCTGTTCGTGAGCTTCGCGAAGTGCATTTTCGGC
GCAGCATCGCAGGAGTTCCTCGGCATGATCATCGACTGTACGGGCCTGTA
CCCTGCTCCGTCTAAGCTAGCTAGATGCAATCGCAAGCATGCCTCGCCCA
CACACCGTAGAAGAGCTGCGCACGTTTTTGGGCCTCACCGGCTACTTGCG
CGTCAGTTTGTTCCTCACTACAGTTTGGCTGCTGCTCCGCTCACCAACAT
CCTGCGCAACAAAGCCTTCGCTTCGAAACGTGCACGCAAGCTGAGGAAGA
CGCCTTCCTGTCTTTACGAGCAACGTTGGCTTCCCCGAAAGTTCTCGCTT
TCCCTGACCTTGAGCGTCCGTTCGAACTACACACGGATGCTAGCACGCTG
GGTGTAGGAGCTTCGTTCATGGAGACAATCGATGGTGAATCCAGAGCGGT
GGCGCTCGCAAGCCACTGGTTTTCATAAACCGATGCTAGACGGGGGGCCA
CGGCACAGGAAGGCATGGGGGTCTTGTGGGCGGTAGACCACTTCCGGCCG
TACCTAGCGGTTAGACGGTTCAAACTTGTGACAGACTGTTCTGCCCTCAC
ATGGTTGTTCCGATGCCGTGAACTCTGCCCCAAGCTGCACAGGTGGGCGA
CGCGGCTGATGGAGTACGACATGGAGCTGGAATGGAAGGCGGGAGTAGAG
CACGCATTGCCCAATGCTTTGTCCCGGTTGACCGTTGCGAACCCTGTAGT
GGTCGACGTCGACGATTCGTTTCCGGATGATCTGTCGTCCGCTGCTGCAG
GAGCTTCGTTAGAGAGATCTCTGGACCGGAGTTGA

Coding sequence (CDS) from alignment at Scaffold_463:22288..24272+

>EsuBft999_8a-0001 ID=EsuBft999_8a-0001|Name=EsuBft999_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1746bp|location=Sequence derived from alignment at Scaffold_463:22288..24272+ (Ectocarpus subulatus male Bft15b)
ATGCCTTGCTACGAGGACGTGGTGTGGGAAGACGACACCTCCTTCGAGTG
GGACGTGAGACAAGTGCCGGAGACCACCGTCGTCGAGGGTTTCACCACTC
GCGCGGTGGAATCTGTGGCTGTGAGGCCACATCCGCTGGACAGGCAGCTA
GTGATGGTCTTGCCGACCGAGCGTGAGGAGAAGGTGACAGTCGAGGGTAG
CCGGGCGATAGCTCGCATGATAGCACTCAATGCTCGCGACAAGCCGGCTT
TCGATTCGCTGTTTGACACCGCCCCCTCTGCTTCCCACCCACCCTTGCCT
CCCCGTGGACCGCGCGCCCCGAGCCCGTCCCCATCTAATGGGACATCCAT
CCCGCGTGTTCGCGTGGAGGACGCCAACCTGGGGACGGCGGGGTCGCTCA
AGAAGCAGCAACTCGTCAACGTCCTCGCAGCGTTCATCGAGGACGGTCTG
TTTCCGCTCGACCCGAAGCGAGTGCCGGCTTGCATCAACGGTGAGTATGA
GCTTCCTCTGATCAACGAGTTTTGTACACCTTTCGCAGCCAAGCAACGGC
GTTTCGCTCCGGCAGGACGACGCATGATCAGGGCAGAGATTCAGCAGTTG
GTAGACCGAGGAGTGATCCGTCAATCCATGTCTCCGTGGGCTGCCCAGTG
CTTGTGCGTTAAGAAGAAGGATGGTACGCTGCGACTGTGCATCGACTGGC
GTGAACTCAACAAACTCTTGGTCTCCGATAGTGGGGGTTGGGGTGACATG
CAGACGATATTCGACGGGTTGAAGGGCAAGAAGTATTTCACGCAGCTAGA
CCTCGCCTCCGGTTTTCGCCAGATGGAAATCGCCGAGAAAGACCGTTACA
AGACGGCCTTTCGAGATGCGGATGGTATGCTTTGGGAATTTACTCGCGCG
GGTTTCGGCCTGACGGTGCTTGCGGCGGCCTTCACTCGTAGAGTAAAGTC
GGCTTGGGGGCATCTATCGGGCGTGTTTAGCTGGCTTGACGACATTGTCA
TCGCTAGCGACACATGGGAAGAACACGTCGCCACTCTGACGCTCGTTCTG
AACCGCCTTCTGGCTGCGGGGCTGTTCGTGAGCTTCGCGAAGTGCATTTT
CGGCGCAGCATCGCAGGAGTTCCTCGGCATGATCATCGACTGTACGGGCC
TGTACCCTGCTCCGTCTAAGCTAGCTAGATGCAATCGCAAGCATGCCTCG
CCCACACACCGTAGAAGAGCTGCGCACGTTTTTGGGCCTCACCGGCTACT
TGCGCGTCAGTTTGTTCCTCACTACAGTTTGGCTGCTGCTCCGCTCACCA
ACATCCTGCGCAACAAAGCCTTCGCTTCGAAACGTGCACGCAAGCTGAGG
AAGACGCCTTCCTGTCTTTACGAGCAACGTTGGCTTCCCCGAAAGTTCTC
GCTTTCCCTGACCTTGAGCGAAGGCATGGGGGTCTTGTGGGCGGTAGACC
ACTTCCGGCCGTACCTAGCGGTTAGACGGTTCAAACTTGTGACAGACTGT
TCTGCCCTCACATGGTTGTTCCGATGCCGTGAACTCTGCCCCAAGCTGCA
CAGGTGGGCGACGCGGCTGATGGAGTACGACATGGAGCTGGAATGGAAGG
CGGGAGTAGAGCACGCATTGCCCAATGCTTTGTCCCGGTTGACCGTTGCG
AACCCTGTAGTGGTCGACGTCGACGATTCGTTTCCGGATGATCTGTCGTC
CGCTGCTGCAGGAGCTTCGTTAGAGAGATCTCTGGACCGGAGTTGA