Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXD3 |
| ProteomeId | EsuBft966_7 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 64 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.02e-39 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | POGK |
| KEGG ko | ko:K09228 |
| Description | DNA binding |
| COG category | CH |
| BRITE | ko00000,ko03000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft966_7a-0001 ID=EsuBft966_7a-0001|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=644bp|location=Sequence derived from alignment at Scaffold_457:114915..115558+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGAAGCAGGAGGAGCAGCTCAGTCAGAGAGAAGGCCAGCGCCAACCCCAA
GCTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCGA
CGCCGAACAAGCCCTTGTGGACTACATCAACGAGCAGCGCAATCAGCACC
GCGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCCAGCTGAAGCCT
GACACCCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTGGC
TTTCAAGGTCAAATTCAACTCCTGGTACCAATGGTTCCGCAAGCGGAATG
GGTTCAGCATCCGCCGGCGTACCAGCGTTGGCCAGAAACTGCCGAAGGGT
TACGAGGGTGTGGCGGGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCGT
AAAGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCAGACG
AGAGCCCCATCAAAGGGGAGGATCTGACTTCCGAGCAGCTGGCGTCTGTG
GAGGCGAAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGCCAGTCCA
GCACGAGATGCCAGTGGAGAACACTCTGGAGAAGGCCGGTGCGAAGGATG
CTCGCATCAGCACAGGAGGTGAGGGCGAGCTAATATTTTTGTAA back to topprotein sequence of EsuBft966_7a-0001 >EsuBft966_7 ID=EsuBft966_7|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MNKLLQLKPDTLGGMPANAKPEEALAFKVKFNSWYQWFRKRNGFSIRRRT
SVGQKLPKGYEGVAGATVMKLREALVKRAGEIYARRHPPAPDESPIKGED
LTSEQLASVEAKVFEELGNMDQTPVQHEMPVENTLEKAGAKDARISTGGE
GELIFL back to topmRNA from alignment at Scaffold_457:114915..115558+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft966_7a-0001 ID=EsuBft966_7a-0001|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=644bp|location=Sequence derived from alignment at Scaffold_457:114915..115558+ (Ectocarpus subulatus male Bft15b)
TGAAGCAGGAGGAGCAGCTCAGTCAGAGAGAAGGCCAGCGCCAACCCCAA
GCTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCGA
CGCCGAACAAGCCCTTGTGGACTACATCAACGAGCAGCGCAATCAGCACC
GCGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCCAGCTGAAGCCT
GACACCCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTGGC
TTTCAAGGTCAAATTCAACTCCTGGTACCAATGGTTCCGCAAGCGGAATG
GGTTCAGCATCCGCCGGCGTACCAGCGTTGGCCAGAAACTGCCGAAGGGT
TACGAGGGTGTGGCGGGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCGT
AAAGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCAGACG
AGAGCCCCATCAAAGGGGAGGATCTGACTTCCGAGCAGCTGGCGTCTGTG
GAGGCGAAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGCCAGTCCA
GCACGAGATGCCAGTGGAGAACACTCTGGAGAAGGCCGGTGCGAAGGATG
CTCGCATCAGCACAGGAGGTGAGGGCGAGCTAATATTTTTGTAA back to topCoding sequence (CDS) from alignment at Scaffold_457:114915..115558+ >EsuBft966_7a-0001 ID=EsuBft966_7a-0001|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_457:114915..115558+ (Ectocarpus subulatus male Bft15b)
ATGAACAAGCTGCTCCAGCTGAAGCCTGACACCCTTGGCGGGATGCCGGC
GAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACTCCT
GGTACCAATGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGTACC
AGCGTTGGCCAGAAACTGCCGAAGGGTTACGAGGGTGTGGCGGGGGCGAC
GGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACG
CTCGGCGCCACCCGCCGGCACCAGACGAGAGCCCCATCAAAGGGGAGGAT
CTGACTTCCGAGCAGCTGGCGTCTGTGGAGGCGAAGGTTTTCGAGGAACT
CGGCAACATGGACCAGACGCCAGTCCAGCACGAGATGCCAGTGGAGAACA
CTCTGGAGAAGGCCGGTGCGAAGGATGCTCGCATCAGCACAGGAGGTGAG
GGCGAGCTAATATTTTTGTAA back to top
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