EsuBft966_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft966_2a-0001
Unique NameEsuBft966_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_457contigScaffold_457:57823..58890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft966_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length96
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft966_2aEsuBft966_2aEctocarpus subulatus male Bft15bgeneScaffold_457 57823..58890 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_2a-0001-exonagat-exon-14464Ectocarpus subulatus male Bft15bexonScaffold_457 57823..57903 +
EsuBft966_2a-0001-exonEsuBft966_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_457 58008..58890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_2a-0001-cdsEsuBft966_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_457 57823..57903 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_2a-0001-exonagat-three_prime_utr-23576Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_457 58125..58890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_2a-0001EsuBft966_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_457 57823..58124 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft966_2a-0001 ID=EsuBft966_2a-0001|Name=EsuBft966_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=964bp|location=Sequence derived from alignment at Scaffold_457:57823..58890+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGACAGTTCCGGTCGGACCTGCGGTGGCACCGTCAGCGTCGGC
AGTCCCTGCCCTGTTGCAACAGCCTTTGTTGGACGATGCTGGTTTGCCTT
TGTCTTCCACGGGAGCGAGAGCGAGGCAGGAGGCTCTGGACGCTGCGGAC
GCCGCTGCAGCGGAGGCCGACACCATCCGCATTCAAGACAANAACTGATC
CTTATGAATTTGCTCATTTTGCGTCTAGCTGCAAGGGTGTGGTCACAGAG
ATCCTCAACAAAAGCGATGCCAAGCGCAAGCAGAGATTTCAAATCCTCCA
CGTGGGTCACCGGATGGCTTCCGTTGTTGCGCAAACACGTCCGTGCTGCT
GTCGTTGAAGGTCAACCAACCGTGCCACGCTGGAATTTCTTGATGCCACC
TTCCTACAGATAGAAAACCATCTGCGCAAGGAACCGGCAGGGCCCTCGAC
GTACGCCTTCTTAATCCAGAAATTGGCGGCTGCCTGGGACACTCAAGACA
AGAGCTCGGGGATTGATCATCTTCGCAGTTTTGGCGTATCCAACGGTGAG
ACTTACGGAGAATACATTTGTCGCTATAAGGCGGCCATGACCGTCATGGT
TTCCCACCGCACGTTCAAGCCTTCTGATGCGCAAGTGCAGATAGCTGTTC
GAGACTCCATGTTGAAGCAGTTTCCGGTAGTGTCTGGGCAGGTGTACAAG
GATGAGCAGCTCTCCATGGAAGTCCCTTTTGGGCGATATTCTTCGTGTCT
GGATGATATGTGGGATGTGTTGGACAAGCGTGCGTTCGTGCACACGCCGG
CGGTGCATGGAGATGATTTCTTTTCGGTATCGTCCACGAATGCTAGGAGT
TCGTCTGCTGTTTCGCGTGCTGTAGCTTCTTCGGCGTTGCGTTCGACGGT
GAGCCCTTCGTGGAGCCAGGGCTCTTCGGCCGTCGTGATGAGTGTTGACC
CTCTACCTAATGAT
back to top

protein sequence of EsuBft966_2a-0001

>EsuBft966_2 ID=EsuBft966_2|Name=EsuBft966_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MSATVPVGPAVAPSASAVPALLQQPLLDDAGLPLSSTGARARQEALDAAD
AAAAEADTIRIQDXN
back to top

mRNA from alignment at Scaffold_457:57823..58890+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft966_2a-0001 ID=EsuBft966_2a-0001|Name=EsuBft966_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1068bp|location=Sequence derived from alignment at Scaffold_457:57823..58890+ (Ectocarpus subulatus male Bft15b)
ATGTCGGCGACAGTTCCGGTCGGACCTGCGGTGGCACCGTCAGCGTCGGC
AGTCCCTGCCCTGTTGCAACAGCCTTTGTTGGTATCGCCGCCCCCTTCCA
ACGTGCGTCTGTTCTGATTGATCCTAGCTCTGCGACCGGCCACATCGTCG
AGCCACCGGGTCAAGCGACATTGCCGTTGACTCAGGACGATGCTGGTTTG
CCTTTGTCTTCCACGGGAGCGAGAGCGAGGCAGGAGGCTCTGGACGCTGC
GGACGCCGCTGCAGCGGAGGCCGACACCATCCGCATTCAAGACAANAACT
GATCCTTATGAATTTGCTCATTTTGCGTCTAGCTGCAAGGGTGTGGTCAC
AGAGATCCTCAACAAAAGCGATGCCAAGCGCAAGCAGAGATTTCAAATCC
TCCACGTGGGTCACCGGATGGCTTCCGTTGTTGCGCAAACACGTCCGTGC
TGCTGTCGTTGAAGGTCAACCAACCGTGCCACGCTGGAATTTCTTGATGC
CACCTTCCTACAGATAGAAAACCATCTGCGCAAGGAACCGGCAGGGCCCT
CGACGTACGCCTTCTTAATCCAGAAATTGGCGGCTGCCTGGGACACTCAA
GACAAGAGCTCGGGGATTGATCATCTTCGCAGTTTTGGCGTATCCAACGG
TGAGACTTACGGAGAATACATTTGTCGCTATAAGGCGGCCATGACCGTCA
TGGTTTCCCACCGCACGTTCAAGCCTTCTGATGCGCAAGTGCAGATAGCT
GTTCGAGACTCCATGTTGAAGCAGTTTCCGGTAGTGTCTGGGCAGGTGTA
CAAGGATGAGCAGCTCTCCATGGAAGTCCCTTTTGGGCGATATTCTTCGT
GTCTGGATGATATGTGGGATGTGTTGGACAAGCGTGCGTTCGTGCACACG
CCGGCGGTGCATGGAGATGATTTCTTTTCGGTATCGTCCACGAATGCTAG
GAGTTCGTCTGCTGTTTCGCGTGCTGTAGCTTCTTCGGCGTTGCGTTCGA
CGGTGAGCCCTTCGTGGAGCCAGGGCTCTTCGGCCGTCGTGATGAGTGTT
GACCCTCTACCTAATGAT
back to top

Coding sequence (CDS) from alignment at Scaffold_457:57823..58890+

>EsuBft966_2a-0001 ID=EsuBft966_2a-0001|Name=EsuBft966_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_457:57823..58890+ (Ectocarpus subulatus male Bft15b)
ATGTCGGCGACAGTTCCGGTCGGACCTGCGGTGGCACCGTCAGCGTCGGC
AGTCCCTGCCCTGTTGCAACAGCCTTTGTTGGACGATGCTGGTTTGCCTT
TGTCTTCCACGGGAGCGAGAGCGAGGCAGGAGGCTCTGGACGCTGCGGAC
GCCGCTGCAGCGGAGGCCGACACCATCCGCATTCAAGACAANAACTGA
back to top