EsuBft3634_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3634_2a-0001
Unique NameEsuBft3634_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_457contigScaffold_457:51922..52479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85763
ProteomeIdEsuBft3634_2
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl4776|Peronosporales
Length558
Hectar predicted targeting categoryother localisation
Evalue1.34e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3634_2aEsuBft3634_2aEctocarpus subulatus male Bft15bgeneScaffold_457 51922..52479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3634_2a-0001-exonEsuBft3634_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_457 51922..52479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3634_2a-0001-cdsEsuBft3634_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_457 51922..52479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3634_2a-0001EsuBft3634_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_457 51922..52479 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3634_2a-0001 ID=EsuBft3634_2a-0001|Name=EsuBft3634_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=558bp|location=Sequence derived from alignment at Scaffold_457:51922..52479+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAACGCGCTTGTGCGGATCATGTCCTACCTCAACGAGACGAAGGA
CCTCGGGATCACCTACGTCCGCGGATCAGGGCTAGACCTAGACGTGTTCG
TCGATTCTAGTTACGCCGACAGCACCGTTGACAGGCGTTCGACGACGGGG
CTAGCCGTGACTGTAGGTGGGACCGTAGTGTGCGCATCCACGAAGACACA
GCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCAGCCGGGG
AGGGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTCGTTCATTGCG
CCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACAACGAGGGGGC
TCTCGCGTTGGTGCAGAACCCTTTCAGCTCGACCAGGAGCAAGCATATCG
ACGTGCGGTTCCCCTTCATCCGCGAGCTCGTCAAGGCGGGCAAGATCACC
GCAGATTATATCTCGACAGAAGAGCAGCACGCCGACATGCTGACCAAGGT
CCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTGATGAACCTGC
CGATGTAG
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protein sequence of EsuBft3634_2a-0001

>EsuBft3634_2 ID=EsuBft3634_2|Name=EsuBft3634_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=185bp
MWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTG
LAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIA
PETSGATIRVREDNEGALALVQNPFSSTRSKHIDVRFPFIRELVKAGKIT
ADYISTEEQHADMLTKVLGRGKLEYHRKALMNLPM
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mRNA from alignment at Scaffold_457:51922..52479+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3634_2a-0001 ID=EsuBft3634_2a-0001|Name=EsuBft3634_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=558bp|location=Sequence derived from alignment at Scaffold_457:51922..52479+ (Ectocarpus subulatus male Bft15b)
ATGTGGAACGCGCTTGTGCGGATCATGTCCTACCTCAACGAGACGAAGGA
CCTCGGGATCACCTACGTCCGCGGATCAGGGCTAGACCTAGACGTGTTCG
TCGATTCTAGTTACGCCGACAGCACCGTTGACAGGCGTTCGACGACGGGG
CTAGCCGTGACTGTAGGTGGGACCGTAGTGTGCGCATCCACGAAGACACA
GCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCAGCCGGGG
AGGGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTCGTTCATTGCG
CCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACAACGAGGGGGC
TCTCGCGTTGGTGCAGAACCCTTTCAGCTCGACCAGGAGCAAGCATATCG
ACGTGCGGTTCCCCTTCATCCGCGAGCTCGTCAAGGCGGGCAAGATCACC
GCAGATTATATCTCGACAGAAGAGCAGCACGCCGACATGCTGACCAAGGT
CCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTGATGAACCTGC
CGATGTAG
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Coding sequence (CDS) from alignment at Scaffold_457:51922..52479+

>EsuBft3634_2a-0001 ID=EsuBft3634_2a-0001|Name=EsuBft3634_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=558bp|location=Sequence derived from alignment at Scaffold_457:51922..52479+ (Ectocarpus subulatus male Bft15b)
ATGTGGAACGCGCTTGTGCGGATCATGTCCTACCTCAACGAGACGAAGGA
CCTCGGGATCACCTACGTCCGCGGATCAGGGCTAGACCTAGACGTGTTCG
TCGATTCTAGTTACGCCGACAGCACCGTTGACAGGCGTTCGACGACGGGG
CTAGCCGTGACTGTAGGTGGGACCGTAGTGTGCGCATCCACGAAGACACA
GCCAGTGACGGCTCAGTCGACCACGGAGGCAGAGTATATTGCAGCCGGGG
AGGGCGTGAAGGAAGCGTTGTTCGTGCGTGGTGTTCTGTCGTTCATTGCG
CCCGAGACGAGCGGTGCCACGATCAGGGTCCGTGAGGACAACGAGGGGGC
TCTCGCGTTGGTGCAGAACCCTTTCAGCTCGACCAGGAGCAAGCATATCG
ACGTGCGGTTCCCCTTCATCCGCGAGCTCGTCAAGGCGGGCAAGATCACC
GCAGATTATATCTCGACAGAAGAGCAGCACGCCGACATGCTGACCAAGGT
CCTTGGTAGGGGCAAGTTGGAGTACCACCGGAAGGCTCTGATGAACCTGC
CGATGTAG
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