EsuBft1068_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1068_5a-0001
Unique NameEsuBft1068_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_451contigScaffold_451:1517300..1520303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LJP7
ProteomeIdEsuBft1068_5
Protein domainsSSF54928
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein PFB0460c OS:Plasmodium falciparum (isolate 3D7) GN:PFB0460c PE:3 SV:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1339
Hectar predicted targeting categoryother localisation
Evalue1.24e-104
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-17_002850.2
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCWC2
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045787,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0071006,GO:0071007,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
DescriptionRNA binding
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_5aEsuBft1068_5aEctocarpus subulatus male Bft15bgeneScaffold_451 1517300..1520303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_5a-0001EsuBft1068_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_451 1517580..1520303 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_5a-0001-exonEsuBft1068_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_451 1517300..1518170 -
EsuBft1068_5a-0001-exonagat-exon-41718Ectocarpus subulatus male Bft15bexonScaffold_451 1518504..1518652 -
EsuBft1068_5a-0001-exonagat-exon-41716Ectocarpus subulatus male Bft15bexonScaffold_451 1519349..1519501 -
EsuBft1068_5a-0001-exonagat-exon-41717Ectocarpus subulatus male Bft15bexonScaffold_451 1520138..1520303 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_5a-0001-exonagat-three_prime_utr-662Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_451 1517300..1517579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_5a-0001-cdsEsuBft1068_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_451 1517580..1518170 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1068_5a-0001 ID=EsuBft1068_5a-0001|Name=EsuBft1068_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1339bp|location=Sequence derived from alignment at Scaffold_451:1517300..1520303- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTTGCCATGCCGCCCGCGCGCAACAAACTACACGTGTGTCCGA
CCGGGTACAGTCTTGCGCCTTCGTCCAGTACGCCCACAGAGCGAGCGCCG
AGTTCGCCAAGGAAGCGATGTCGAACCAGTCTCTCCTCACCGCCGAGAAG
CTCGCGTCCAACAGAGCCGCCGGCGAGAGACGGAGAGAAAAAAGCACCGG
ACCAAGCCGGCCGCCCTCGTCAGCCTCCTCCGGTAGCGGTAGCGGCGGCG
GTGACGGCGGAGACGATGGGCCCGTGCTGCACGTGCGATGGGCCGCGGAA
GACCCCAATCCCCGGGCCGTTGTCCAGGCGAGGGCGGGGCACGCGCAGAC
CCTCTTGGCTGCCCAGGTGGCTAACGGTGCCCTGCCGTCCGACGTCGCCG
GCCGGCTCCCGGGGGCAGACCGCGCCCTTTTAAGGAAGGCGGGAATGGAC
CCGCGCAATCCCTCGCAGGCCGATCTCGAGCTCCTGAACACGCAGCGGCA
GTACCTCGCCGTACAGGGGCACCCTGAGGCGAACGGCGAGTACCCCAACA
CTGACCATCAGTACCCGCCGAACATGGATCATCATTACCCCAACACGGAT
CATCAGTACCCCAACACTGATCATCAGTACCCGAGCACGGATCATCAGTA
CCCCATCACGGATCATCAGTACCCGAGCACGGATCATCAGTACCCCAGCA
CGGATCATCAATACCCCATCACGGATCATCAGTACCCCAAGATGGGTAAT
CAAAATCCAAGCGCAGGTCACCGGCACACGAGCTTAAGCGACGATCCCGG
TGACCGACACGCGAGCACCGACGCACCATCACTCCAGAGCACGCATGGCG
GAGCAAGACAAGGCTATCCCGCCCAACCTCTTGGTGTCAGCTCAAGCACG
CCTCCTGGCAGCAGCGTCGCGCAGCGTCAGAGTTTCGAGCGACTGCCGCC
CGCGGGGGAGGCGGGGGTGGGCGTAGGAAGAGGGGCGGCAGCAGGGGGGG
CTGGTGCCGGCGGGTCGCTGTCGCTGCTTGGCGGCTACGGCTCGGGCGAA
TCCGACTGAATATTTTGTTGCTTGTGGAGTGTATTGAAGGGTGTCGTCGT
TGTTTTTCCGAGGAAGCTGATGAGTGTGCGGTGGGGCTGTGGTGTTGTCT
CCGTCGATAGGAGTTTGAGCCGGAGTTTTTACTCTGCCCTCGCGTGCCAC
CAAGTATGTGCCTGCGAATGTGAATCAAACTTGAAGCAGCGCATTGTAGC
TGTGCAGTCTTCCTGTAGAGGTCCCACGGCTATCACTATTATCATCCCTT
GACGTACGACGTGCGTGCAAGTATGGGATCACGAGCGTT
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protein sequence of EsuBft1068_5a-0001

>EsuBft1068_5 ID=EsuBft1068_5|Name=EsuBft1068_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=352bp
MASCHAARAQQTTRVSDRVQSCAFVQYAHRASAEFAKEAMSNQSLLTAEK
LASNRAAGERRREKSTGPSRPPSSASSGSGSGGGDGGDDGPVLHVRWAAE
DPNPRAVVQARAGHAQTLLAAQVANGALPSDVAGRLPGADRALLRKAGMD
PRNPSQADLELLNTQRQYLAVQGHPEANGEYPNTDHQYPPNMDHHYPNTD
HQYPNTDHQYPSTDHQYPITDHQYPSTDHQYPSTDHQYPITDHQYPKMGN
QNPSAGHRHTSLSDDPGDRHASTDAPSLQSTHGGARQGYPAQPLGVSSST
PPGSSVAQRQSFERLPPAGEAGVGVGRGAAAGGAGAGGSLSLLGGYGSGE
SD
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mRNA from alignment at Scaffold_451:1517300..1520303-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1068_5a-0001 ID=EsuBft1068_5a-0001|Name=EsuBft1068_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3004bp|location=Sequence derived from alignment at Scaffold_451:1517300..1520303- (Ectocarpus subulatus male Bft15b)
ATGGCGTCTTGCCATGCCGCCCGCGCGCAACAAACTACACGTGTGTCCGA
CCGGGTACAGTCTTGCGCCTTCGTCCAGTACGCCCACAGAGCGAGCGCCG
AGTTCGCCAAGGAAGCGATGTCGAACCAGTCTCTCCTCACCGCCGAGAAG
CTCGCGTCCAACAGAGGTATGCTACGATCTTTGTGGTGTCACGAGCCACC
ACTTGTCACGGCTACAGCTACTGCTGGAGCTGCCGCGCAGTGACTGCACA
TGTGAAGAACAAGAAGTCTCGGCCTGCTAATAGTTGTAGATGGATATCGC
CCAGGATGCCAGTCTGCGTCCCATGCTGGGAAGGCCATGTGAGGTCTTCG
CCTCATGTGCCGTATCACCGTAACCCACAATGAGCGCTTCATGGAGAAGT
TGCCATCTCACTGCAGAACGGAAAGTAGGCCTCGCGAGGACGAGGCAGCG
AAAGCCCAGGCGCAGGCCACGTTTATGATCTGGTGGGTTCATGGGTTGAA
TCGGCCCGCCGCTCCGTTAGCTTTTGCTGTTTTCGCCAATAGGTTCGGTA
TTGGTAGACACGAATGATCACTTGGCTTCTAGTTCGTTTTTGGTCTAGCG
AGGACGGCATGTGGCTGCATGAGTAACCCTGCCGAAAGGGAAGGCATGGC
CAAGTGTTTAATTCCCCCCCCGTTCCCACGGCATGCGAGTACACCCTTCG
AAAGGGATGCACGGTGAACTGTTTTAATTTCCCCCGAGACAAGCAAAAAC
ACAAGATCCCCCCGCGCCCCCTCCGTTTGTCGATGCAACACCGTCGTTGC
AGCCGCCGGCGAGAGACGGAGAGAAAAAAGCACCGGACCAAGCCGGCCGC
CCTCGTCAGCCTCCTCCGGTAGCGGTAGCGGCGGCGGTGACGGCGGAGAC
GATGGGCCCGTGCTGCACGTGCGATGGGCCGCGGAAGACCCCAATCCCCG
GGCCGGTGAGACACCGATATCCTGCCCTTTCCTGGTGGGAGCGTTCTTCT
TTGTGTGGGTGTGCGTCTTTGTTGGTAGCATCGACCGCCCTAGGCGGCCG
AACAACGAAAATACCTGTCTCAGTGCGGTTGGGAAAACAACATTCTTCTA
AAGGGTACAATGTCGGTGTGTGCGTGTGTGTGTGTCTTGTGTTTTTTTTC
TTTGTGGTTGTTCGTTTGCTTGCTTTACCGGAAATGTAGCACTCTGCGGG
AGGGAGCTTTTGTACTTGTATTTTCTCCATGGTACTCTCGTTGATGGGCC
TTTGTTTCTTTTTTTGTTTCGGCTTGTACGAAGCGTCAGAAAGCGGTTCT
TGAGAAGCACGATGTCCAAAAACGTTAGAATAACCCCCCCTCATGCTTCA
TCAGAGGATGCGTCGTTAATGGTCAAACAACTGAGACGTGCAAATCATGA
GTACGCCCCCCCTAGCACATTCCGCGGAGTCACCAAGTTCGACTTGCGGT
GGGACCAGTGGGTATGGTGGGCATGGGCGGGTTCGAAGTGTTGCTCGAAC
TGATGTGCTGCTATCGGCAACTCGATAAGAAGTCGCCTATTGCCGCTTGC
CCTTCGTTTCAGTGTTGCGCCTCCCCGCCACGCCTTGGGTTGGTTACCCA
CGAACGTCCGACAACCACGGCCGACACCACTTGCTTTGCTGCTGAAAACA
GTTGTCCAGGCGAGGGCGGGGCACGCGCAGACCCTCTTGGCTGCCCAGGT
GGCTAACGGTGCCCTGCCGTCCGACGTCGCCGGCCGGCTCCCGGGGGCAG
ACCGCGCCCTTTTAAGGAAGGCGGGAATGGACCCGCGCAATCCCTCGCAG
GTAGGGTATGTGGTGGGGCGAAAAAAAGGCTAGGCCACGGTGACGGGAAT
GGGGGGGAGAGAGGGAGAGAGAGAGGGAGAGAGAGAGAGATAGAGAGAGA
GAGAGAGAGAGGGGACGGAATGGACCCGAGCAAACAGGTGGAGTTTAGGT
TAGGTTTGAGTTAGGGGAGGGTGAGGGTGGGGGAGACAACGGACGGGACT
ACATAGCCCCCCCCCCTGTGCGTTGCGCCTCACCTTTCGGCGGCGCCTCA
TGTCTAATCTCTTGCCGCCTTCGTGTTGGACACGTTCTTGTCGTGCCGTT
GTTGTTGTTGCTGCTGTCTGTTTTGTAAAAAAGGCCGATCTCGAGCTCCT
GAACACGCAGCGGCAGTACCTCGCCGTACAGGGGCACCCTGAGGCGAACG
GCGAGTACCCCAACACTGACCATCAGTACCCGCCGAACATGGATCATCAT
TACCCCAACACGGATCATCAGTACCCCAACACTGATCATCAGTACCCGAG
CACGGATCATCAGTACCCCATCACGGATCATCAGTACCCGAGCACGGATC
ATCAGTACCCCAGCACGGATCATCAATACCCCATCACGGATCATCAGTAC
CCCAAGATGGGTAATCAAAATCCAAGCGCAGGTCACCGGCACACGAGCTT
AAGCGACGATCCCGGTGACCGACACGCGAGCACCGACGCACCATCACTCC
AGAGCACGCATGGCGGAGCAAGACAAGGCTATCCCGCCCAACCTCTTGGT
GTCAGCTCAAGCACGCCTCCTGGCAGCAGCGTCGCGCAGCGTCAGAGTTT
CGAGCGACTGCCGCCCGCGGGGGAGGCGGGGGTGGGCGTAGGAAGAGGGG
CGGCAGCAGGGGGGGCTGGTGCCGGCGGGTCGCTGTCGCTGCTTGGCGGC
TACGGCTCGGGCGAATCCGACTGAATATTTTGTTGCTTGTGGAGTGTATT
GAAGGGTGTCGTCGTTGTTTTTCCGAGGAAGCTGATGAGTGTGCGGTGGG
GCTGTGGTGTTGTCTCCGTCGATAGGAGTTTGAGCCGGAGTTTTTACTCT
GCCCTCGCGTGCCACCAAGTATGTGCCTGCGAATGTGAATCAAACTTGAA
GCAGCGCATTGTAGCTGTGCAGTCTTCCTGTAGAGGTCCCACGGCTATCA
CTATTATCATCCCTTGACGTACGACGTGCGTGCAAGTATGGGATCACGAG
CGTT
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Coding sequence (CDS) from alignment at Scaffold_451:1517300..1520303-

>EsuBft1068_5a-0001 ID=EsuBft1068_5a-0001|Name=EsuBft1068_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1059bp|location=Sequence derived from alignment at Scaffold_451:1517300..1520303- (Ectocarpus subulatus male Bft15b)
ATGGCGTCTTGCCATGCCGCCCGCGCGCAACAAACTACACGTGTGTCCGA
CCGGGTACAGTCTTGCGCCTTCGTCCAGTACGCCCACAGAGCGAGCGCCG
AGTTCGCCAAGGAAGCGATGTCGAACCAGTCTCTCCTCACCGCCGAGAAG
CTCGCGTCCAACAGAGCCGCCGGCGAGAGACGGAGAGAAAAAAGCACCGG
ACCAAGCCGGCCGCCCTCGTCAGCCTCCTCCGGTAGCGGTAGCGGCGGCG
GTGACGGCGGAGACGATGGGCCCGTGCTGCACGTGCGATGGGCCGCGGAA
GACCCCAATCCCCGGGCCGTTGTCCAGGCGAGGGCGGGGCACGCGCAGAC
CCTCTTGGCTGCCCAGGTGGCTAACGGTGCCCTGCCGTCCGACGTCGCCG
GCCGGCTCCCGGGGGCAGACCGCGCCCTTTTAAGGAAGGCGGGAATGGAC
CCGCGCAATCCCTCGCAGGCCGATCTCGAGCTCCTGAACACGCAGCGGCA
GTACCTCGCCGTACAGGGGCACCCTGAGGCGAACGGCGAGTACCCCAACA
CTGACCATCAGTACCCGCCGAACATGGATCATCATTACCCCAACACGGAT
CATCAGTACCCCAACACTGATCATCAGTACCCGAGCACGGATCATCAGTA
CCCCATCACGGATCATCAGTACCCGAGCACGGATCATCAGTACCCCAGCA
CGGATCATCAATACCCCATCACGGATCATCAGTACCCCAAGATGGGTAAT
CAAAATCCAAGCGCAGGTCACCGGCACACGAGCTTAAGCGACGATCCCGG
TGACCGACACGCGAGCACCGACGCACCATCACTCCAGAGCACGCATGGCG
GAGCAAGACAAGGCTATCCCGCCCAACCTCTTGGTGTCAGCTCAAGCACG
CCTCCTGGCAGCAGCGTCGCGCAGCGTCAGAGTTTCGAGCGACTGCCGCC
CGCGGGGGAGGCGGGGGTGGGCGTAGGAAGAGGGGCGGCAGCAGGGGGGG
CTGGTGCCGGCGGGTCGCTGTCGCTGCTTGGCGGCTACGGCTCGGGCGAA
TCCGACTGA
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