EsuBft1023_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1023_6a-0001
Unique NameEsuBft1023_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_132contigScaffold_132:179563..180382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1023_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length66
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_002000.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_6aEsuBft1023_6aEctocarpus subulatus male Bft15bgeneScaffold_132 179563..180382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_6a-0001-exonagat-exon-33127Ectocarpus subulatus male Bft15bexonScaffold_132 179563..179598 +
EsuBft1023_6a-0001-exonEsuBft1023_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_132 179753..180382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_6a-0001-cdsEsuBft1023_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_132 179563..179598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_6a-0001EsuBft1023_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_132 179563..180382 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1023_6a-0001 ID=EsuBft1023_6a-0001|Name=EsuBft1023_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=666bp|location=Sequence derived from alignment at Scaffold_132:179563..180382+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCTCATATCGCGAGGCACATCCTTGAGAGGGTGAACACACGCCG
AGTTGGAAAAGCAGCCCCACGGGTTTATTCCCGATGGCCTTTGGCTCCCA
GATCCGCCAAGGACGAAGGTTCCTTCGTCTCGATAACCCTTAGCTCGGCA
AAGAAGTCTACGAAGAACATGCCGTGTACCAATGTGCCGATGGAGTGCAT
ATTCTGTAACCAATGGGAATGGAAATACTCTGTGAGTCGCAATGTTGACG
AATTACACGCCGCCGATGCGAAACTGAGGAAGACCGACTCGATAGGTCGA
CAGTTTCTGGAGGATATTTTTGTGAGCGAAGACGCGAAGAAAGCTGTGGG
CGTAATGCTCGAAAAGGGTATAAAACGAATGGGTGGAACCCTTGGTACAC
ACAAAACCAAGGTGGAACTTCGTGGGAACACCACGGGGAGAACTGGGGCC
AAACCCAAAGGTGGCAAAGGAAAAGGTCGACGGGACACCCGCAGCGAATC
GAGCGACTCTTCCAGCGAGTCGAGCGATGAACAAGAAGAAGAAGAGGAGG
ATTGGGAGAGGAGAATGAGGAAGAAGACGAAGAAGAAGAAGAAGAAGAAC
GATCACGAGGAGGAGGAGGAGGGGTACATGAAGACGATGAGGACGAGGGA
AAGAAGTCGGGGGTGA
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protein sequence of EsuBft1023_6a-0001

>EsuBft1023_6 ID=EsuBft1023_6|Name=EsuBft1023_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MRPHIARHILERVNTRRVGKAAPRVYSRWPLAPRSAKDEGSFVSITLSSA
KKSTKNMPCTNVPMECIFCNQWEWKYSVSRNVDELHAADAKLRKTDSIGR
QFLEDIFVSEDAKKAVGVMLEKGIKRMGGTLGTHKTKVELRGNTTGRTGA
KPKGGKGKGRRDTRSESSDSSSESSDEQEEEEEDWERRMRKKTKKKKKKN
DHEEEEEGYMKTMRTRERSRG
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mRNA from alignment at Scaffold_132:179563..180382+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1023_6a-0001 ID=EsuBft1023_6a-0001|Name=EsuBft1023_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=820bp|location=Sequence derived from alignment at Scaffold_132:179563..180382+ (Ectocarpus subulatus male Bft15b)
ATGCGGCCTCATATCGCGAGGCACATCCTTGAGAGGGTAGGTAGGGTGTG
TAGAATGGCGTACGTAGTACTACATGAGGAAAGCATACAACATGCTCGCG
CGTGTACGATATTGAAACGTACCTACGCTGGACTTGACGGGGAGGGGCAT
TTGTGGTATCTGTGGTCAAGACGACGGTTGCAACTCCTAGGTGAACACAC
GCCGAGTTGGAAAAGCAGCCCCACGGGTTTATTCCCGATGGCCTTTGGCT
CCCAGATCCGCCAAGGACGAAGGTTCCTTCGTCTCGATAACCCTTAGCTC
GGCAAAGAAGTCTACGAAGAACATGCCGTGTACCAATGTGCCGATGGAGT
GCATATTCTGTAACCAATGGGAATGGAAATACTCTGTGAGTCGCAATGTT
GACGAATTACACGCCGCCGATGCGAAACTGAGGAAGACCGACTCGATAGG
TCGACAGTTTCTGGAGGATATTTTTGTGAGCGAAGACGCGAAGAAAGCTG
TGGGCGTAATGCTCGAAAAGGGTATAAAACGAATGGGTGGAACCCTTGGT
ACACACAAAACCAAGGTGGAACTTCGTGGGAACACCACGGGGAGAACTGG
GGCCAAACCCAAAGGTGGCAAAGGAAAAGGTCGACGGGACACCCGCAGCG
AATCGAGCGACTCTTCCAGCGAGTCGAGCGATGAACAAGAAGAAGAAGAG
GAGGATTGGGAGAGGAGAATGAGGAAGAAGACGAAGAAGAAGAAGAAGAA
GAACGATCACGAGGAGGAGGAGGAGGGGTACATGAAGACGATGAGGACGA
GGGAAAGAAGTCGGGGGTGA
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Coding sequence (CDS) from alignment at Scaffold_132:179563..180382+

>EsuBft1023_6a-0001 ID=EsuBft1023_6a-0001|Name=EsuBft1023_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_132:179563..180382+ (Ectocarpus subulatus male Bft15b)
ATGCGGCCTCATATCGCGAGGCACATCCTTGAGAGGGTGAACACACGCCG
AGTTGGAAAAGCAGCCCCACGGGTTTATTCCCGATGGCCTTTGGCTCCCA
GATCCGCCAAGGACGAAGGTTCCTTCGTCTCGATAACCCTTAGCTCGGCA
AAGAAGTCTACGAAGAACATGCCGTGTACCAATGTGCCGATGGAGTGCAT
ATTCTGTAACCAATGGGAATGGAAATACTCTGTGAGTCGCAATGTTGACG
AATTACACGCCGCCGATGCGAAACTGAGGAAGACCGACTCGATAGGTCGA
CAGTTTCTGGAGGATATTTTTGTGAGCGAAGACGCGAAGAAAGCTGTGGG
CGTAATGCTCGAAAAGGGTATAAAACGAATGGGTGGAACCCTTGGTACAC
ACAAAACCAAGGTGGAACTTCGTGGGAACACCACGGGGAGAACTGGGGCC
AAACCCAAAGGTGGCAAAGGAAAAGGTCGACGGGACACCCGCAGCGAATC
GAGCGACTCTTCCAGCGAGTCGAGCGATGAACAAGAAGAAGAAGAGGAGG
ATTGGGAGAGGAGAATGAGGAAGAAGACGAAGAAGAAGAAGAAGAAGAAC
GATCACGAGGAGGAGGAGGAGGGGTACATGAAGACGATGAGGACGAGGGA
AAGAAGTCGGGGGTGA
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