EsuBft1102_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1102_13a-0001
Unique NameEsuBft1102_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_448contigScaffold_448:5478..9506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolGFS
StatusManually annotated
Seed ortholog2880.D7FW27
ProteomeIdEsuBft1102_13
Protein domainsIPR016040
Protein domainsIPR001509
Protein domainsSSF51735
Protein domainsPTHR10366
Ownerapollo_admin@sb-roscoff.fr
Notegdp-l-fucose synthase os:dictyostelium discoideum gn:ger pe:3 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1919
Hectar predicted targeting categoryother localisation
Evalue2.14e-148
EggNOG OGsCOG0451@1|root,KOG1431@2759|Eukaryota
Date last modified2016-09-09
Date creation2016-06-13
Preferred nameTSTA3
KEGG rclassRC01014
KEGG koko:K02377,ko:K12812
KEGG ReactionR05692
KEGG Pathwayko00051,ko00520,ko01100,ko03013,ko03015,ko03040,ko05164,map00051,map00520,map01100,map03013,map03015,map03040,map05164
KEGG ModuleM00406,M00430
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006403,GO:0006725,GO:0006793,GO:0006807,GO:0006810,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0009055,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0015931,GO:0016491,GO:0016614,GO:0016616,GO:0016853,GO:0016854,GO:0016857,GO:0018130,GO:0019438,GO:0019673,GO:0019835,GO:0022610,GO:0022900,GO:0033036,GO:0033227,GO:0034641,GO:0034654,GO:0042350,GO:0042351,GO:0042356,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046368,GO:0046483,GO:0047918,GO:0050577,GO:0050657,GO:0050658,GO:0051179,GO:0051234,GO:0051236,GO:0055086,GO:0055114,GO:0071702,GO:0071704,GO:0071705,GO:0098609,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EC1.1.1.271,3.6.4.13
DescriptionGDP-L-fucose synthetase
DescriptionGDP-L-fucose synthase activity
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
NoteHerve C., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0033227
GO0050577
EC1.2.3.4
GO0031012
GO0042351
EC1.1.1.271
GO0050162
EC1.1.1.187
GO0070062
GO0050662
GO0007159
GO0005737
GO0019673
GO0009055
GO0042356
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_13aEsuBft1102_13aEctocarpus subulatus male Bft15bgeneScaffold_448 5478..9506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_13a-0001EsuBft1102_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_448 5478..7905 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_13a-0001-exonagat-exon-51133Ectocarpus subulatus male Bft15bexonScaffold_448 5478..5504 +
EsuBft1102_13a-0001-exonagat-exon-51131Ectocarpus subulatus male Bft15bexonScaffold_448 5746..6009 +
EsuBft1102_13a-0001-exonagat-exon-51134Ectocarpus subulatus male Bft15bexonScaffold_448 6422..6547 +
EsuBft1102_13a-0001-exonagat-exon-51129Ectocarpus subulatus male Bft15bexonScaffold_448 7086..7166 +
EsuBft1102_13a-0001-exonagat-exon-51132Ectocarpus subulatus male Bft15bexonScaffold_448 7753..8649 +
EsuBft1102_13a-0001-exonagat-exon-51130Ectocarpus subulatus male Bft15bexonScaffold_448 8791..9100 +
EsuBft1102_13a-0001-exonEsuBft1102_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_448 9293..9506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_13a-0001-cdsEsuBft1102_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_448 5478..5504 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1102_13a-0001-exonagat-three_prime_utr-983Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_448 7906..8649 +
EsuBft1102_13a-0001-exonagat-three_prime_utr-984Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_448 8791..9100 +
EsuBft1102_13a-0001-exonagat-three_prime_utr-985Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_448 9293..9506 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1102_13a-0001 ID=EsuBft1102_13a-0001|Name=EsuBft1102_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1919bp|location=Sequence derived from alignment at Scaffold_448:5478..9506+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCTGCTGAAAACACCTTGCATCGTGGGGGGATTGTTCAGCAACCT
CAAGTACAAGGTGGAGTTCTTCCGCGAGAACATCCTCATCAACGACAACG
TGATGGAGTGCTGCAGGATCTACAAGGTGGAGAAGCTGGTGTCCTGCCTG
TCGACGTGCATCTTCCCCGACAAGACCACCTACCCCATCGACGAGACCAT
GGTGCACAACGGCCCGCCGCACACCAGCAACGAAGGGTACGCGTACGCCA
AGCGCATGATCGACGTGCTCAACCGCTGCTACAAGGTGCCAGACGAGTAC
GGCTGCAACTTCACATCGGTGATCCCCACCAACATCTACGGCAAGGGGGA
CAACTTTTCCATCGACAACGGGCACGTGCTCCCGGGACTCATCCACAAGT
GCTACAAGGCGAAGCAGGCGGGCGAGGACTTGCACGTTTGGGGCACCGGG
AGCCCGCTACGCCAATTCATCTACAACGTCGACCTCGGCGCCCTGATGAT
CTGGACGATGCGCAACTACCACGAGGTAGATCCTATCATCTTGTCCGTCG
GGGAGGAGGACGAAGTGTCCATCGCGGACGCGGCGAAGATGATCGCGAGC
GCGATGAACTTCGAAGGGAACGTTGTCTTCGACACTGACAAGGTGGCTTG
ACTTGACTTGACTTGACTTGCATGTGCAGCAGTAGCGTTTTTCATGTCTA
CTGTTGCTACCTAGAGACAACGTTTACTTGCGGTCTTATGGTGTATGTAA
CGTTTTCATGTTTGCGACAGACGATCTACCTGGAGATGATCTTGACCGTT
GTCGTTCAACTTATATGTACCTTGGTGCCGGGTTCGATCGTTTTCTGTGA
CGAGCTCGCAGAGAGAAAGTCGTCAAAAGATATGCACCTAAATATATCGC
TTTGGACTTTTGAACGGGAATACAGCTCGCCGTCGTCAAGGCACGCTCGT
GTGGTTTTTTTCTGTCGCTCCTGAAAGCCTTGCATACCGTCCGGCTTCCT
TGGCGTATTGACGAATGAGATAGAAGCTCCCTGGCTTTCGTGGGAACGTT
TGGAAGTTTGAGAAGCTTGGCTTGTCTTGGTTCTTGCATTAGGTAACCCC
TCGCTTGTCACGGCCCAGGTCAGGTGATTTTGGCGCTTTGTTTTGATTTT
GATTTTGATTGTGTCGATCTTCCTCACCCCTCCTCGCCGGCGTCTCGACC
CGGCACTTTGCGCTCCCCTCAGAAAGCGGCGAATCGAGTTACTTTCGCTC
TTGAATCTCTCCTTCTCGTGGTTTGCGTGTCCGCGCGCCGCATGTGGTTG
TGTTTCCGTCCCCTACCCCCAACTCTTAATCCGCTCTGCTGCGTCTCCCT
CAAGCTGGTGGTTCCTGATCCTGGTCGTTTGTTTTTCTTATCGTGGACGG
ACTCAAGGCGGTGAGTAACCCCCCCCCCCTGACAGTCAACAACGAGATCG
GCTCTTATGCTATAAGTGTGTCGGGCTCCTTGTAGTGTTGGCCTTTCCCG
TGCATGTACTGCTTTATCACGAGTCAAGCGTCGTCAGATGTCCAAGATCC
GTGTCAGCACGCTTGCGCAGCTCTCATTTGTTGTGGAAGATGCTCTCGTT
CGTCTTGAGCAGGCGTGGGGAGGTAGTCTTTTGCCCCGTACATGCCATGG
CGGAAATTTTTTTCTCAAGTGTTTATTTTACCCTCATCCTTAGTTACCAG
GCATGGACCGATCACCGATGGCCAATCGTTCCTTTCTATGGACGGGACGA
AAAAAGCACACAGAACACACTCACGTAAGGTAGGCTACAACTGTTTGAGA
TGCATCGCGCACGATCACCTTCCGTTGATGTCGCCGACAAACGCTGCCTT
CAGTCCCATGCTATGCCCTCGACACACCGCTCACGTTGCCGTACACAGGC
GTGCGACTGGTTCTGCGAG
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protein sequence of EsuBft1102_13a-0001

>EsuBft1102_13 ID=EsuBft1102_13|Name=EsuBft1102_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=216bp
MYLLKTPCIVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCL
STCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKVPDEY
GCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTG
SPLRQFIYNVDLGALMIWTMRNYHEVDPIILSVGEEDEVSIADAAKMIAS
AMNFEGNVVFDTDKVA
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mRNA from alignment at Scaffold_448:5478..9506+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1102_13a-0001 ID=EsuBft1102_13a-0001|Name=EsuBft1102_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4029bp|location=Sequence derived from alignment at Scaffold_448:5478..9506+ (Ectocarpus subulatus male Bft15b)
ATGTACCTGCTGAAAACACCTTGCATCGTTTGGGGCAACTGTATCATGAC
ACCTTTATTGTCACCTGGCCAACCACAACAGACCCGCTCACCCGTGTTGC
TTATTTTTCGGCAGTGATCAAACAACGACCTCACGGTGTGAGACCCTTCT
TTTGAAATCGTACATGGCACGGCAGACAGCAGCATGATCTTGATCGCCAA
AAGCTCTTCCCCATGATAAAACATGTGTCCGCTGTTCCACCCGCCCGCCG
AAATCAACGAATATACAGGTGGGGGGATTGTTCAGCAACCTCAAGTACAA
GGTGGAGTTCTTCCGCGAGAACATCCTCATCAACGACAACGTGATGGAGT
GCTGCAGGATCTACAAGGTGGAGAAGCTGGTGTCCTGCCTGTCGACGTGC
ATCTTCCCCGACAAGACCACCTACCCCATCGACGAGACCATGGTGCACAA
CGGCCCGCCGCACACCAGCAACGAAGGGTACGCGTACGCCAAGCGCATGA
TCGACGTGCTCAACCGCTGCTACAAGGTGCCAGTATGTTACGACTCCCTC
CTCCTCCTCGGCTACTCTATTGTCTTTGTTGCCTGATTTTTTACCTTTTC
GACACGTTTGTTGAGGTTGCATATCCGTTTCTGGCGAGGGCCCGCAAGCG
TAAACTGGAAGGCGGACTGACTTCTAGTAAAACAGGGTCCGCGCCCTGTT
TTTTCTCCTGCATCGCGCTGAGTTGCGTGGTTTGGGAGATAGACGCTAAA
ACGCGCGGAGGGGCTGTATCGTTCGTGTTCGGCTTTAAGTCGGAGTCTTT
CATCACCTTCCTGGGCTTCCTTTGTATGCTGTAGTGGATGTATCTCAAGG
CGCCTCGGCTGCCACCAGCTGTTCCGTTGCTGCCGCGACTTTACCTCTGG
TGCTGCCTCTCGTTGTGGACGTACGATTGTCGCACTCACGGCAGGACGAG
TACGGCTGCAACTTCACATCGGTGATCCCCACCAACATCTACGGCAAGGG
GGACAACTTTTCCATCGACAACGGGCACGTGCTCCCGGGACTCATCCACA
AGTGCTACAAGGCGAAGCAGGTTAGCTCAGCTACTGCTGTAGTGGCTGCT
GCTGCTGCTGCTGCTGCTGCAACAACGTCCATGGTCGCTGGAAATCTGGC
GTGGCGATGTGTTGAGCCGCTGGCGGAGGCCAGCTTGCGCGTTGAGGGTA
TGCCTACCCGAGAAAGTATTATTTTGTTGCGTTTCTTGCTTCGTCGTCCC
GTCTCTGGGTGCACTATCTGGGCAAGTTGCGTATGGTCGACAAAGGGCGT
CGATGGTTCTCTCAGATAAGAGCGCTCTATACGTACGGTGCCCTTTGTTT
TGCGGGAGATTTTTTTTCGCCCGATGTTGCTGGGAGATGCGGATCGATCT
CGCGTGTGTTGCCGCCTCAATCCACCATATCTCTGTAAATTGTTGTGGCT
GGCAACAGAACATGGTTTTAATGTGTGTTGCACGCTGACACACTATTGTA
CGCACACGTATCAGGCCATGTCAGAGTTAATGTGGCGGTGACCCACTCAC
TCATAATCCATGCCTTGTCTGCTGTTGCGGCGTTTGTTTGGCTTCTCTTT
GAGCTCAGGCGGGCGAGGACTTGCACGTTTGGGGCACCGGGAGCCCGCTA
CGCCAATTCATCTACAACGTCGACCTCGGCGCCCTGATGGTGAGGGTGGG
GTAGCCTTTGTCGTGGTTTATTCCTGTGTGTTGTGTGTTCCCCCTGGGTA
CTGAAGCTTGAGAAGATTTGGTCCAGCTAATGTTGAATATTCCTGTGCGT
GTTGCCCCTGAGTACTGAAACTTGCTTGCTTGTGACCGGGTCCTCTACGA
GCGTGACTGGGGCGTACATTGTGTTTTGTAGCGATCAATAGTGTTGGACC
AATGCTGCTGTGGTGTTGCGGAGTCCCTTCTCGGCGGTGCCTTGTTCGCC
GTTTCCCCTTCTCCGAGACACTCGGGAGGTCTTCAGCTCCCGTTTCTGTC
ATGGATGACTAGCTTACGACAGGCAGACATTCTTTCCACGATTGGCACGT
CAATTATTTCGAACTTTGTTTTCACCGTGCCGTCATTCGCCGCGAGTTTG
TGTAGGCCAAATGAGGCGTGTGCCTGCTTCGGCGTGCTGTCTGCTTCGGA
AAAGGCAAAGCCAAAAGAACACAGCTACAAGTTCGTACACACCTGCTGTA
GTCTAATCGACACGCTCGCGCGATTTGCTTGCTTTTTTCCTTGCTTGCTT
GCTTGCTCTATCTTGGCGAGATCAGATCTGGACGATGCGCAACTACCACG
AGGTAGATCCTATCATCTTGTCCGTCGGGGAGGAGGACGAAGTGTCCATC
GCGGACGCGGCGAAGATGATCGCGAGCGCGATGAACTTCGAAGGGAACGT
TGTCTTCGACACTGACAAGGTGGCTTGACTTGACTTGACTTGACTTGCAT
GTGCAGCAGTAGCGTTTTTCATGTCTACTGTTGCTACCTAGAGACAACGT
TTACTTGCGGTCTTATGGTGTATGTAACGTTTTCATGTTTGCGACAGACG
ATCTACCTGGAGATGATCTTGACCGTTGTCGTTCAACTTATATGTACCTT
GGTGCCGGGTTCGATCGTTTTCTGTGACGAGCTCGCAGAGAGAAAGTCGT
CAAAAGATATGCACCTAAATATATCGCTTTGGACTTTTGAACGGGAATAC
AGCTCGCCGTCGTCAAGGCACGCTCGTGTGGTTTTTTTCTGTCGCTCCTG
AAAGCCTTGCATACCGTCCGGCTTCCTTGGCGTATTGACGAATGAGATAG
AAGCTCCCTGGCTTTCGTGGGAACGTTTGGAAGTTTGAGAAGCTTGGCTT
GTCTTGGTTCTTGCATTAGGTAACCCCTCGCTTGTCACGGCCCAGGTCAG
GTGATTTTGGCGCTTTGTTTTGATTTTGATTTTGATTGTGTCGATCTTCC
TCACCCCTCCTCGCCGGCGTCTCGACCCGGCACTTTGCGCTCCCCTCAGA
AAGCGGCGAATCGAGTTACTTTCGCTCTTGAATCTCTCCTTCTCGTGGTT
TGCGTGTCCGCGCGCCGCATGTGGTTGTGTTTCCGTCCCCTACCCCCAAC
TCTTAATCCGCTCTGCTGCGTCTCCCTCAAGCTGGTGGTTCCTGATCCTG
GTCGTTTGTTTTTCTTATCGTGGTATGTAAAATCTCAGATGCCTTGCCTC
GTTGTGGTTGCTCTGTGTTTTCGTTTCCCCAGTCGGACGGACAGTTCAAG
AAGACGGCGTGTAACGACCTCCTCAAAAAGAAGAACCCTGACTTCAAGTT
CACATCCATGCAGGACGGACTCAAGGCGGTGAGTAACCCCCCCCCCCTGA
CAGTCAACAACGAGATCGGCTCTTATGCTATAAGTGTGTCGGGCTCCTTG
TAGTGTTGGCCTTTCCCGTGCATGTACTGCTTTATCACGAGTCAAGCGTC
GTCAGATGTCCAAGATCCGTGTCAGCACGCTTGCGCAGCTCTCATTTGTT
GTGGAAGATGCTCTCGTTCGTCTTGAGCAGGCGTGGGGAGGTAGTCTTTT
GCCCCGTACATGCCATGGCGGAAATTTTTTTCTCAAGTGTTTATTTTACC
CTCATCCTTAGTTACCAGGCATGGTACGTCAAGCATACCCCGACGCCCAG
AATGGACGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGCGTACTCTTATGTTT
TGCATGCCTTAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGA
GCATTGTTCCCACAGGACCGATCACCGATGGCCAATCGTTCCTTTCTATG
GACGGGACGAAAAAAGCACACAGAACACACTCACGTAAGGTAGGCTACAA
CTGTTTGAGATGCATCGCGCACGATCACCTTCCGTTGATGTCGCCGACAA
ACGCTGCCTTCAGTCCCATGCTATGCCCTCGACACACCGCTCACGTTGCC
GTACACAGGCGTGCGACTGGTTCTGCGAG
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Coding sequence (CDS) from alignment at Scaffold_448:5478..9506+

>EsuBft1102_13a-0001 ID=EsuBft1102_13a-0001|Name=EsuBft1102_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=651bp|location=Sequence derived from alignment at Scaffold_448:5478..9506+ (Ectocarpus subulatus male Bft15b)
ATGTACCTGCTGAAAACACCTTGCATCGTGGGGGGATTGTTCAGCAACCT
CAAGTACAAGGTGGAGTTCTTCCGCGAGAACATCCTCATCAACGACAACG
TGATGGAGTGCTGCAGGATCTACAAGGTGGAGAAGCTGGTGTCCTGCCTG
TCGACGTGCATCTTCCCCGACAAGACCACCTACCCCATCGACGAGACCAT
GGTGCACAACGGCCCGCCGCACACCAGCAACGAAGGGTACGCGTACGCCA
AGCGCATGATCGACGTGCTCAACCGCTGCTACAAGGTGCCAGACGAGTAC
GGCTGCAACTTCACATCGGTGATCCCCACCAACATCTACGGCAAGGGGGA
CAACTTTTCCATCGACAACGGGCACGTGCTCCCGGGACTCATCCACAAGT
GCTACAAGGCGAAGCAGGCGGGCGAGGACTTGCACGTTTGGGGCACCGGG
AGCCCGCTACGCCAATTCATCTACAACGTCGACCTCGGCGCCCTGATGAT
CTGGACGATGCGCAACTACCACGAGGTAGATCCTATCATCTTGTCCGTCG
GGGAGGAGGACGAAGTGTCCATCGCGGACGCGGCGAAGATGATCGCGAGC
GCGATGAACTTCGAAGGGAACGTTGTCTTCGACACTGACAAGGTGGCTTG
A
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