Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 126957.SMAR002230-PA |
| ProteomeId | EsuBft3093_2 |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 132 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 9.44e-06 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | POGK |
| Description | pogo transposable element with KRAB domain |
| COG category | BD |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3093_2a-0001 ID=EsuBft3093_2a-0001|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1323bp|location=Sequence derived from alignment at Scaffold_442:68095..69417+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGCATGTACACGGCACA
CACGGCAAAGGCGGCCAGGGACCCCAAGACGGGCAAGCTGGCACCGCCGG
GGCGTGGGGCCGTCGCTACTTGGTGCAAGAACGCGTGGGCATCCATCACC
CCCGAGACAGTCAAGACTTGCTTCAAGATCTGCGGCCTCACGCTCGCGCC
CGACGGCAGCAAAGACCACGCCTGGTGCCTGCACAACTCCGGGGACGGCT
ACCGCGAGCTCTGTTGGTATGCCCTTGTTGTGTGACCTCCATAGTACAAA
GAGTGTTGTTAACGGCATGTATTATCGTAGGGGGACATGAGGGAGAAGGA
GGGAGGAAGAGTGCCAGACCCAAAGCCAGTCGAAAAGGGGGCCCGCAACT
CGTATCTCAAGGTCTCTCCTAGCCGCCCCTCAAGGCAATCCCATCTGCGG
TACACGAAACCGCCAGTGATTTGGTACAATCCGACTAATCTACCTCCACG
CACGAACACCCTCCCTTGGTTCTTTACGCCAGTGAATAACCACCACTCGT
GCGTCGAAGAGTACATCCGAAAAGCACCTTAAACAACGCAAATTCGAAAC
AAGGGGAAACCCGCCATCGGATCAAAACCCCTTACAAATTTCAACGCCTT
CACGCCGTTCATATCATGAAAGATTCCAACGGCCGTACTGCAACATCAAG
GCAAGACAATATCTACCACCGCCCCCGGCTCGCTCTCTACGCCACGCTCG
GCTGACTCGACAAGGTCCTCCCTGCGCAGCACAAAAACAAATCATCAAGC
ACGCCCCTACCCTTCTGGTGAGGTCGTACGACAAACTTGGCCAAAATAGC
CACCTACAATGCACCTGATATCCATTGTCCGCTCCTCGAATAACACTGAT
AGTCTACACGCCGTATGCCCTTCCTTACGCAACACATGCCTAGTAGTTGG
GGACGACTTCATACGCCCTCTCTAGTGTGCCAAACAACGCGCGTCGCTTT
CCCCTTCTCGGAAAGGCGCTTTCCTTTCTTCATTCCTTGAACAAAGGCGA
CGCCTGGTGAGATTCGAACTCCCGGCGTATCCTTACTCGTTACATGGTCT
TATTCACCAGACTACTCAGTCACTTGGTTGCCTAGAAGCACATACACGTG
GCGATCGTCCAGCATTCAATCAACAAATCAGACACATGGTACATGCAACA
TCGTGGAAACATGACCAAACTCCTCCCGTAAAGAGAGTCCAACAGCACCC
AAGAGGCAACGCCCTCCGTTATCCAGTAACTGCAAGATCGAAATAGTTCC
ACCTCAATCATGAGAGGACGACC back to topprotein sequence of EsuBft3093_2a-0001 >EsuBft3093_2 ID=EsuBft3093_2|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASIT
PETVKTCFKICGLTLAPDGSKDHAWCLHNSGDGYRELCWYALVV back to topmRNA from alignment at Scaffold_442:68095..69417+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3093_2a-0001 ID=EsuBft3093_2a-0001|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1323bp|location=Sequence derived from alignment at Scaffold_442:68095..69417+ (Ectocarpus subulatus male Bft15b)
ATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGCATGTACACGGCACA
CACGGCAAAGGCGGCCAGGGACCCCAAGACGGGCAAGCTGGCACCGCCGG
GGCGTGGGGCCGTCGCTACTTGGTGCAAGAACGCGTGGGCATCCATCACC
CCCGAGACAGTCAAGACTTGCTTCAAGATCTGCGGCCTCACGCTCGCGCC
CGACGGCAGCAAAGACCACGCCTGGTGCCTGCACAACTCCGGGGACGGCT
ACCGCGAGCTCTGTTGGTATGCCCTTGTTGTGTGACCTCCATAGTACAAA
GAGTGTTGTTAACGGCATGTATTATCGTAGGGGGACATGAGGGAGAAGGA
GGGAGGAAGAGTGCCAGACCCAAAGCCAGTCGAAAAGGGGGCCCGCAACT
CGTATCTCAAGGTCTCTCCTAGCCGCCCCTCAAGGCAATCCCATCTGCGG
TACACGAAACCGCCAGTGATTTGGTACAATCCGACTAATCTACCTCCACG
CACGAACACCCTCCCTTGGTTCTTTACGCCAGTGAATAACCACCACTCGT
GCGTCGAAGAGTACATCCGAAAAGCACCTTAAACAACGCAAATTCGAAAC
AAGGGGAAACCCGCCATCGGATCAAAACCCCTTACAAATTTCAACGCCTT
CACGCCGTTCATATCATGAAAGATTCCAACGGCCGTACTGCAACATCAAG
GCAAGACAATATCTACCACCGCCCCCGGCTCGCTCTCTACGCCACGCTCG
GCTGACTCGACAAGGTCCTCCCTGCGCAGCACAAAAACAAATCATCAAGC
ACGCCCCTACCCTTCTGGTGAGGTCGTACGACAAACTTGGCCAAAATAGC
CACCTACAATGCACCTGATATCCATTGTCCGCTCCTCGAATAACACTGAT
AGTCTACACGCCGTATGCCCTTCCTTACGCAACACATGCCTAGTAGTTGG
GGACGACTTCATACGCCCTCTCTAGTGTGCCAAACAACGCGCGTCGCTTT
CCCCTTCTCGGAAAGGCGCTTTCCTTTCTTCATTCCTTGAACAAAGGCGA
CGCCTGGTGAGATTCGAACTCCCGGCGTATCCTTACTCGTTACATGGTCT
TATTCACCAGACTACTCAGTCACTTGGTTGCCTAGAAGCACATACACGTG
GCGATCGTCCAGCATTCAATCAACAAATCAGACACATGGTACATGCAACA
TCGTGGAAACATGACCAAACTCCTCCCGTAAAGAGAGTCCAACAGCACCC
AAGAGGCAACGCCCTCCGTTATCCAGTAACTGCAAGATCGAAATAGTTCC
ACCTCAATCATGAGAGGACGACC back to topCoding sequence (CDS) from alignment at Scaffold_442:68095..69417+ >EsuBft3093_2a-0001 ID=EsuBft3093_2a-0001|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_442:68095..69417+ (Ectocarpus subulatus male Bft15b)
ATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGCATGTACACGGCACA
CACGGCAAAGGCGGCCAGGGACCCCAAGACGGGCAAGCTGGCACCGCCGG
GGCGTGGGGCCGTCGCTACTTGGTGCAAGAACGCGTGGGCATCCATCACC
CCCGAGACAGTCAAGACTTGCTTCAAGATCTGCGGCCTCACGCTCGCGCC
CGACGGCAGCAAAGACCACGCCTGGTGCCTGCACAACTCCGGGGACGGCT
ACCGCGAGCTCTGTTGGTATGCCCTTGTTGTGTGA back to top
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