Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6669.EFX68856 |
| ProteomeId | EsuBft1004_4 |
| Protein domains | Coil |
| Protein domains | PTHR19303 |
| Protein domains | IPR004875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 1188 |
| Evalue | 2.5e-57 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Jerky protein homolog-like |
| COG category | BD |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1004_4a-0001 ID=EsuBft1004_4a-0001|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1188bp|location=Sequence derived from alignment at Scaffold_442:30952..32407- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGAGGNGCTGGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGA
CAAAGCCCGGAANGCCGAGAAGTACCCGGCTAGGTTCATCTTCAACGTCG
ACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCC
ACCTCGGAGGATCGGAAGACGGCGCGGGGCTCAAAGAGCACGCACTTCAA
GGACCGACTGTCTGCCATCATGTGCTGCAATGCCGATGGCACTGCGAAGG
TGGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAAC
GGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTC
CGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGC
GCTTCACTCACGAACCTGTGCTGCTGCTGATGGACGGCTGTTCGTCTCAC
AGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCATGACCTACCCTCC
GCTGTGCACCGCCGTACACCAACCCATGGACCAGGGGGTCATCGCCAAGA
CGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACCATG
TTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAAGGC
CGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACGCCG
CTGAACGTCTCCAGAAAGCATGGGCCAGCGTCACCGCTCAAGACATCGCC
AGGTGCTTTGTCAAAGCCGAGACGCTTCCGGAGGAGATGGCGGCTGAGCT
CACCAAGCAACACGGAAAGACCCGGTTCAACGTCGCCGAGCCTGACCTGA
AGGCTCTCGCAGAGACTGTCAACACGTTGAGCACGAGCGTGCAGGACGCC
CAGAAGCAGGGATCCTGCGTCGTGGACGAGGAGATCAGCGAACTGTTGGC
AGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGGGAAGCGGTGGCCG
CGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGAGGTGGTAGAGGCT
CTTCGATTGGACGCGGTGGAAGACATGACAGCACTGCTGGCTGGAACGAA
CTTGTCTACCGGCGGCGACGACGAGGAGGACGAACAGGACTAGGGCGGCG
GCGGTGAGAACACGGAGCGCGAGCGCCGTGCCTCACGT back to topprotein sequence of EsuBft1004_4a-0001 >EsuBft1004_4 ID=EsuBft1004_4|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=380bp
MARXWRQVDEIALDLLDKARXAEKYPARFIFNVDETGLQWKLMPRRTYLS
TSEDRKTARGSKSTHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKN
GGSPLKYFSQTNAWSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSH
SDLVDDRGQVTVMTYPPLCTAVHQPMDQGVIAKTKVNYRKELLDVKTSTM
LVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAERLQKAWASVTAQDIA
RCFVKAETLPEEMAAELTKQHGKTRFNVAEPDLKALAETVNTLSTSVQDA
QKQGSCVVDEEISELLAELNIEPGKPVAGEAVAAIQGWATIEDDEEVVEA
LRLDAVEDMTALLAGTNLSTGGDDEEDEQD back to topmRNA from alignment at Scaffold_442:30952..32407- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1004_4a-0001 ID=EsuBft1004_4a-0001|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1456bp|location=Sequence derived from alignment at Scaffold_442:30952..32407- (Ectocarpus subulatus male Bft15b)
ATGGCGAGGNGCTGGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGA
CAAAGCCCGGAANGCCGAGAAGTACCCGGCTAGGTTCATCTTCAACGTCG
ACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCC
ACCTCGGAGGATCGGAAGACGGCGCGGGGCTCAAAGAGCACGCACTTCAA
GGACCGACTGTCTGCCATCATGTGCTGCAATGCCGATGGCACTGCGAAGG
TGGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAAC
GGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTC
CGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGC
GCTTCACTCACGAACCTGTGCTGCTGCTGATGGACGGCTGTTCGTCTCAC
AGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCATGACCTACCCTCC
GCTGTGCACCGCCGTACACCAACCCATGGACCAGGGGGTCATCGCCAAGA
CGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACCATG
TTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAAGGC
CGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACGCCG
CTGAACGTCTCCAGAAAGCATGGGCCAGCGTCACCGCTCAAGACATCGCC
AGGTGAGGTTTGAACATGTGATATCGCTGTTTTAAATGTGTAGCTCGCGC
AAGTGCGCATGGCTTTGGTGGTACGTTACGTGGGTAAGGTTGTACGGATA
GGTTTTATTTTTCGACTGAATATTCCCGCAACCGCAAATCTCCTTGTTTC
TTCGCTAAAAAAAGGGCCCTCTCTCGCATCCCTATGAGTCATTGTTTGTC
ACTGGGTTCGTCTAACATCGCTTCTCCACCCAAACACGGATGCATCACAA
TTTCTGCGCTACCTGGCCAGGTGCTTTGTCAAAGCCGAGACGCTTCCGGA
GGAGATGGCGGCTGAGCTCACCAAGCAACACGGAAAGACCCGGTTCAACG
TCGCCGAGCCTGACCTGAAGGCTCTCGCAGAGACTGTCAACACGTTGAGC
ACGAGCGTGCAGGACGCCCAGAAGCAGGGATCCTGCGTCGTGGACGAGGA
GATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAAGCCGGTCG
CGGGGGAAGCGGTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACGAC
GAGGAGGTGGTAGAGGCTCTTCGATTGGACGCGGTGGAAGACATGACAGC
ACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGAGGAGGACG
AACAGGACTAGGGCGGCGGCGGTGAGAACACGGAGCGCGAGCGCCGTGCC
TCACGT back to topCoding sequence (CDS) from alignment at Scaffold_442:30952..32407- >EsuBft1004_4a-0001 ID=EsuBft1004_4a-0001|Name=EsuBft1004_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_442:30952..32407- (Ectocarpus subulatus male Bft15b)
ATGGCGAGGNGCTGGCGGCAGGTGGATGAGATAGCTCTTGATCTACTCGA
CAAAGCCCGGAANGCCGAGAAGTACCCGGCTAGGTTCATCTTCAACGTCG
ACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTTTCC
ACCTCGGAGGATCGGAAGACGGCGCGGGGCTCAAAGAGCACGCACTTCAA
GGACCGACTGTCTGCCATCATGTGCTGCAATGCCGATGGCACTGCGAAGG
TGGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCTTCAAGAAC
GGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGGTCCGACTC
CGCGACGTTCCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTTCGTTCGGC
GCTTCACTCACGAACCTGTGCTGCTGCTGATGGACGGCTGTTCGTCTCAC
AGTGATCTAGTGGATGATCGCGGGCAAGTTACCGTCATGACCTACCCTCC
GCTGTGCACCGCCGTACACCAACCCATGGACCAGGGGGTCATCGCCAAGA
CGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCAACCATG
TTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAGATGAAGGC
CGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCGGGACGCCG
CTGAACGTCTCCAGAAAGCATGGGCCAGCGTCACCGCTCAAGACATCGCC
AGGTGCTTTGTCAAAGCCGAGACGCTTCCGGAGGAGATGGCGGCTGAGCT
CACCAAGCAACACGGAAAGACCCGGTTCAACGTCGCCGAGCCTGACCTGA
AGGCTCTCGCAGAGACTGTCAACACGTTGAGCACGAGCGTGCAGGACGCC
CAGAAGCAGGGATCCTGCGTCGTGGACGAGGAGATCAGCGAACTGTTGGC
AGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGGGAAGCGGTGGCCG
CGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGAGGTGGTAGAGGCT
CTTCGATTGGACGCGGTGGAAGACATGACAGCACTGCTGGCTGGAACGAA
CTTGTCTACCGGCGGCGACGACGAGGAGGACGAACAGGACTAG back to top
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