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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRS6 |
| ProteomeId | EsuBft100_16 |
| Protein domains | IPR000537 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR11048 |
| Protein domains | IPR006369 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | protoheme ix mitochondrial os:arabidopsis thaliana gn:cox10 pe:2 sv:4 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2145 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 1.16e-285 |
| EggNOG OGs | COG0109@1|root,KOG1380@2759|Eukaryota |
| Ec32 ortholog description | COX10 homolog, cytochrome c oxidase assembly protein |
| Ec32 ortholog | Ec-08_002270.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | COX10 |
| KEGG rclass | RC01786 |
| KEGG ko | ko:K02257,ko:K09008,ko:K22072 |
| KEGG Reaction | R07411 |
| KEGG Pathway | ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714 |
| KEGG Module | M00154 |
| GOs | GO:0000266,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004311,GO:0004518,GO:0004519,GO:0004659,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006753,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008495,GO:0008535,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016740,GO:0016765,GO:0016787,GO:0016788,GO:0017004,GO:0017144,GO:0018130,GO:0018342,GO:0018343,GO:0019438,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033013,GO:0033014,GO:0034622,GO:0034641,GO:0036211,GO:0042168,GO:0042440,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046148,GO:0046160,GO:0046483,GO:0048285,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0071704,GO:0071840,GO:0072521,GO:0090304,GO:0090305,GO:0097159,GO:0097354,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 |
| EC | 2.5.1.141 |
| Description | heme o metabolic process |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01006,ko03029 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0044281 |
| GO | 0009060 |
| EC | 2.5.1.29 |
| GO | 0048034 |
| GO | 0031966 |
| GO | 0000266 |
| GO | 0004129 |
| GO | 0008535 |
| GO | 0006784 |
| GO | 1902600 |
| GO | 0008495 |
| EC | 1.9.3.1 |
| GO | 0016021 |
| GO | 0044238 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2145bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCAGCCAATGCGCTGCACGCAACAAAGCATACCACACGCGTTGTCGCCCG
TACTTCATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGC
ACATGCCCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCAT
GTGCGTTTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTG
GTAGCAGAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCA
CCGTTTGAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGG
CTGGAGGACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACG
ATGCTCGCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGC
GAATGATGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGA
GGATTTCGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCT
GGTATCTCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGG
TGCAGCCAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGA
GGTCGGAGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCT
TTGATGGGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCT
GTTGTTGGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTC
TTGCCTGGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTC
CCATGCGCCGATCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTA
CTCCTGGTACCTCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTA
CGAGCTGGATGTTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTC
TACCACGCTTACCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGG
AGTGTTCAAGGCGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCG
TGTTTCACTCGCGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAG
CTATCCACACTCATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCT
GCACGAAATCGTGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAG
TCGTAGAAGCAGCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCT
CACAAGGAGGAGAGTCTGCTGGCACGGAGTGATACAGGTAGTTAGGTAGG
AAGCCCAGGCATATCAAGGATAGAACGCTTTCGCGATTGTGATGTTGCTT
TCCCCCAATAGCGAGCAGTTAGGACCCCGAAATCACTACACGCTTCCGGG
GTAGCTGCTGTAGCACGACGTGTTGGAACCACGTGTGTTCAACATCTACT
CAGCGCACCGGCATAAAAACGCGTAGCTTCATAGCCAACAACGGATGCCG
CGCACGCTGTGCGTAAAATACTCCCATCTACACCGTACGCCGCACAGCAG
TGAACGGCCGCGCGCAATTAGCCGTGATTTTGGTTGATGAGCCCGTCCAC
CTCATTTCCTATAAAGAACGCCAGCGCAGCGCACGATCCTCCTAGGACGA
GCATTTCTGTGCCGGAGATGCACCAGTGACGGGTGCCGAATTGACTCTTG
ACATGCGTCGGAACAGCGGGGGTCGCAGGATGTTTGGTCATGGTTAGTGA
AGCGTTTGTGCGTACTCAAAATTCGATGGCATGGTCGTCGTGAGTGAAAG
GGACGGCTGAACACTTAGGAGCAAGTGAAGGCAAGCACCGCAGAATGAAG
GCGGAGAAAATAGAAAACTTTTGAGAGATGTTCCTCCTGTGACTTCCGGT
ATTGAGTTGGTTTCATGCACGCGCTGCGTGATGCCCGGCTGCAACGCGAT
TTGTGTCTCCCACCGATTGCCGCACAAGATCGAATGGTCACCGTGTATGC
GAATACGACCAAACACGCAACACGACTCTCTTCTGTTGAGTTTCCTCTTA
GACCTGATCGGGATCGGGCGATCCCTAGCAAAACACATGTGTTGCTGTCC
CGTGTAGACTTGCGTCTTCGATCCGTCAGCCGGGTTAGGGAAATC back to topprotein sequence of EsuBft100_16a-0001 >EsuBft100_16 ID=EsuBft100_16|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=412bp
MLLRGVHGRLCKPLAHARALGVVRLGPNLEACAFGTDTRQQEPKRRTVVA
EAGHLMKLYSQLSKHRLSALVMSTTSAGYLAAGGPVDALALTSACVGTML
ASSSANTFNQVIETANDARMHRTRARPLPSGRISRQHALGWGVASGTAGI
SVLAAGSNPLTATLGAANLLLYVGPYTLSKTRSEINTWVGSVVGAVPPLM
GWAAATGELVAVEPLLLATYLFMWQFPHFFSLAWLHREDYARGGFAMVPC
ADPTGSRTASLVTRYSWYLVPIPLAAAALDATSWMFAVEGTAFNAYLLYH
AYRFDKDKSNANARGVFKASLWHLPAVLALFVFHSRRWELEDKAEDEQLS
TLIPRIRARLTKLCLHEIVQKDEAASFCPVVVVEAAGTEAQNIATAAAHK
EESLLARSDTGS back to topmRNA from alignment at Scaffold_441:255449..258232+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2784bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)
GCAGCCAATGCGCTGCACGCAACAAAGCATACCACACGCGTTGTCGCCCG
TACTTCATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGC
ACATGCCCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCAT
GTGCGTTTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTG
GTAGCAGAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCA
CCGTTTGAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGG
CTGGAGGACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACG
ATGCTCGCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGC
GAATGATGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGA
GGATTTCGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCT
GGTATCTCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGG
TGCAGCCAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGA
GGTCGGAGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCT
TTGATGGGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCT
GTTGTTGGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTC
TTGCCTGGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTG
AGAGGTGCATGCACACACTGTTTTGACCGATGGGCAAATGCCGTCGATGC
TGCTGTATCAGTGCGCCTCCCGTGTGTCCGTGTGTTTCTCTGTAAATAGA
AGCGGCGGGCTGTGAGCATAACGTTGGCTTCGTACGGCATTTTTGGAGTG
CTTGTTGTTTATGTCTAAAAAGCATTCCTTCCTTTTCGTAGAGGCCCTTT
CTTGGTGCCGCCCGCCCCCCTACTGACGTCACGTCGCGGTAGACAGGAAA
CATGCGGTTGAAATACCAACGCACTTGCCGTCGATATTCGTACTAATAGT
GCCACGCTTTTTCGGATCATATCGTTTACATCATTTTCACTTGTGAGGTT
GCGGAGGTCTTTTGCAAATGCGGTGTTCATGTGTGTCATCGTGAACGTGT
TTGTCAGCAATATGGTGCCACCCGCCCGGCGTCACTTGAAAGAACAGGTC
CTAGTTAGTCGGCCAATGTTTATCGTCATGTGTATACACTGCTGTCGTGC
AGCAACAGAGGCGACGAAGATTACATACGTGTACAAGCACCACTGTCGTG
TGTGGTTTGTGTGCTCAACTCGCACGGGTCGTTCTCACCATTCCTACGGG
GAAACCTGCTTTACGCTCGATTTGCGCTCTCGCCAGGTCCCATGCGCCGA
TCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTACTCCTGGTACC
TCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTACGAGCTGGATG
TTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTCTACCACGCTTA
CCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGGAGTGTTCAAGG
CGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCGTGTTTCACTCG
CGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAGCTATCCACACT
CATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCTGCACGAAATCG
TGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAGTCGTAGAAGCA
GCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCTCACAAGGAGGA
GAGTCTGCTGGCACGGAGTGATACAGGTAGTTAGGTAGGAAGCCCAGGCA
TATCAAGGATAGAACGCTTTCGCGATTGTGATGTTGCTTTCCCCCAATAG
CGAGCAGTTAGGACCCCGAAATCACTACACGCTTCCGGGGTAGCTGCTGT
AGCACGACGTGTTGGAACCACGTGTGTTCAACATCTACTCAGCGCACCGG
CATAAAAACGCGTAGCTTCATAGCCAACAACGGATGCCGCGCACGCTGTG
CGTAAAATACTCCCATCTACACCGTACGCCGCACAGCAGTGAACGGCCGC
GCGCAATTAGCCGTGATTTTGGTTGATGAGCCCGTCCACCTCATTTCCTA
TAAAGAACGCCAGCGCAGCGCACGATCCTCCTAGGACGAGCATTTCTGTG
CCGGAGATGCACCAGTGACGGGTGCCGAATTGACTCTTGACATGCGTCGG
AACAGCGGGGGTCGCAGGATGTTTGGTCATGGTTAGTGAAGCGTTTGTGC
GTACTCAAAATTCGATGGCATGGTCGTCGTGAGTGAAAGGGACGGCTGAA
CACTTAGGAGCAAGTGAAGGCAAGCACCGCAGAATGAAGGCGGAGAAAAT
AGAAAACTTTTGAGAGATGTTCCTCCTGTGACTTCCGGTATTGAGTTGGT
TTCATGCACGCGCTGCGTGATGCCCGGCTGCAACGCGATTTGTGTCTCCC
ACCGATTGCCGCACAAGATCGAATGGTCACCGTGTATGCGAATACGACCA
AACACGCAACACGACTCTCTTCTGTTGAGTTTCCTCTTAGACCTGATCGG
GATCGGGCGATCCCTAGCAAAACACATGTGTTGCTGTCCCGTGTAGACTT
GCGTCTTCGATCCGTCAGCCGGGTTAGGGAAATC back to topCoding sequence (CDS) from alignment at Scaffold_441:255449..258232+ >EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1239bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGCACATGC
CCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCATGTGCGT
TTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTGGTAGCA
GAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCACCGTTT
GAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGGCTGGAG
GACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACGATGCTC
GCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGCGAATGA
TGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGAGGATTT
CGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCTGGTATC
TCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGGTGCAGC
CAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGAGGTCGG
AGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCTTTGATG
GGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCTGTTGTT
GGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTCTTGCCT
GGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTCCCATGC
GCCGATCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTACTCCTG
GTACCTCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTACGAGCT
GGATGTTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTCTACCAC
GCTTACCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGGAGTGTT
CAAGGCGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCGTGTTTC
ACTCGCGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAGCTATCC
ACACTCATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCTGCACGA
AATCGTGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAGTCGTAG
AAGCAGCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCTCACAAG
GAGGAGAGTCTGCTGGCACGGAGTGATACAGGTAGTTAG back to top
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