Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 44056.XP_009038082.1 |
| ProteomeId | EsuBft100_15 |
| Protein domains | IPR013219 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 100 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.89e-05 |
| EggNOG OGs | 2D0C1@1|root,2SDM7@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K17411 |
| Description | Mitochondrial ribosomal subunit S27 |
| COG category | S |
| BRITE | br01610,ko00000,ko03011 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1000bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCAGCAGCCAGCGCCGTGCTCGAGAGATTGCAGAGTGCCAAAGAGCACA
CCTACCACTGCAACGCTGACAGAGGAGGGGCTAGCCATGAACAAGAATGT
GGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCCCCACAGCAATGTCC
GTACTGGCAACAAGGTTTTGCGCAAGAACATCATTGGCCAGAAGATAGCA
GAGTACTACCCGCAGACTACAGTCCCGGACATGGTCAAAATGGCGGAGAA
GGAGATTCCTGGCGTTATCATGGACCACAAGCGAGAATGGCGACGACAAA
AACGTGAACTAGACGAGGGATCAAAACGAGGATCTTCGAAAAAAGGCGAG
GGAAAGCGATCAACATGATGCAGGCTCCGACCGTGCTTGGATGTTGTTTC
TACCGTGGCGCATGGTCTTTGCTGTCGCAATTTGGTAGTGCGACTCTCCA
CCAGTAAGAAGAATGTAGATTTTCAAGCTGCAGGGTACAGGATACCTCCG
CACTGATGGTTTTGATTGGAGGTGGTGTTGATTGGGTTTGCGTTGGATGC
ATTTTTCGTCAGCAAGAGTTGGACCCTTCACTGTGCATCAGCAGTAGAAA
TTGACCGCTCTTCTTCGAGCTGGACTCATGAAGCATCCATGGGACCGACC
GATTGAATTAAGCTTCCTTGGCGTGAGGCATGATGTTGCTGCCTGGGGCG
TAGCTTTTGTGCTGCGCAGCTGTCTCTTGTCGTTCACGCCACCTGTTCTG
GCTGGTGGCCTCGCAACAGTCCTGGAATGCAAGCAGAAGTAGCAGCATAT
TTGCACAGAGGTGTACATTATGGTCAAGTTCGTATGTATGTTTGGTTTGT
TCCCAAATGAAAACAGCTGACATAATATGGAGAGTAGGACTTGCAGAAAA
CATCAACAAGGACAACATGTTGAGGTGCATGTATGTATTCGTTCTGCAAG
GATGCGCCATGTACACATCACTTCAAGACTCACAAGAGCTCCTGCTGACG back to topprotein sequence of EsuBft100_15a-0001 >EsuBft100_15 ID=EsuBft100_15|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MNKNVAEAARRIFGNLPHSNVRTGNKVLRKNIIGQKIAEYYPQTTVPDMV
KMAEKEIPGVIMDHKREWRRQKRELDEGSKRGSSKKGEGKRST back to topmRNA from alignment at Scaffold_441:252782..255330- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2549bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)
TGCAGCAGCCAGCGCCGTGCTCGAGAGATTGCAGAGTGCCAAAGAGCACA
CCTACCACTGCAACGCTGACAGAGGAGGGGCTAGCCATGAACAAGAATGT
GGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCCCCACAGCAATGTCC
GTACTGGCAACAAGGTTTTGCGCAAGAACATCATTGGCCAGAAGATAGCA
GAGGTGTGTACCAACGTACCAACGTGCCAACCCACTGCGGAACCCATTTC
AGTCGTACAGCAGTACATGTATGCGTAACAGAGTAGCATTTGCCGTCCCC
GACTTCGTAAAATCCACGCTGAGTGAAGGGCAAGCCCTCATGGTCAACAT
GTTTTGACGTCTGGTCTTGAACGCGGAGGCGTGTACACTTGATTGAGTCT
ATGACTGCTGCGACCATGGGTGCACTGCTGTCATACGCAACTTGACATTT
GGACGTTTACCTCATGGTACACATATTACCGCTGTTTGAGAGATTCAAAG
CTGGCATCGAACACGGCTTCTTCCGATGCCCACAAGCTTGCGAATGTTAA
CACCCCAATACTCAAACCATATCTTCCTTCTACACCTCCCCAGTGTACTT
TGGGTTAGGGTTAGCAGATTGACCACCAACTGCTGTGGAGCCTGTAATGC
ATACCCACAGGGGAGATATCGCTGTGTGCTGCTCGGGGAACCGTAGAAAC
CTTGGTATTATGACAGCAGTGCTTCCGCTAACTCCATGGATTAATTGCTA
ATTCATCCTGTATTGAGCGCCACGACCCCAACTTGAAATTTGATGATTTC
GTGTGCGCGTGTGTGCAAGAGCGGTCGCACTACAGGGCAGCGCGTTTGGC
AACTGAAATGCCAACTCATGACAAAAGAAATGCGGGAAACTCTTCTGTTG
TCTAAAATTTTAGGTAACATTCCTATTCGTCTCCGATCAGAGCAATCTCA
GCCAACTGAAAGCGGTGGGTTACCATCAAAGTGCGCTGGGCTTCTGAACC
GAATCAGAAAGGAGCGAGAGCAGCCCCATATCAGCTACCTTAAAGTCCCT
TGGTGCGCTTGGTTCACTTCTTGTCCCAGAGGTTTAGAAATCGTTTCCTA
TCCTTGTTGACATCAACGGATTTTGCCTCTACTTTTGCTGCCATATTGGC
TCCTGATTATCCACGCAAGTCAAACCTTGGGTCATGTTCGGTTTGCTCTC
GTATCCTCCGCATCCACCGGTAATTCTTCTACCGCCTTGTCACCTAGCAT
GTTTGGTAACCGCAAACGCGCATTTTTTTGTCCTGCTGATATCCCGCGTG
TAATCTCCACGTCTTCCCAGTACTACCCGCAGACTACAGTCCCGGACATG
GTCAAAATGGCGGAGAAGGAGATTCCTGGCGTTATCATGGACCACAAGCG
AGAATGGCGACGACAAAAACGTGAACTAGACGAGGGATCAAAACGAGGTA
TGTAGTCGATGCAGCAGAATTCAAACACCGTGAACGTCTGGCTAGATTGG
GTGACGCACCAGGTGTACGACTTGTTCGCTGAAACTTTAATGGAAGATAT
TGCGGGTTGCCCCAAGCTCTGCTGTCGTGCTAAGGGCTGAGAGCCCAGAT
CAAGACAAACCGAACAGTGAGAGTAAGGAAGACATGCGCTGCTGCTACAC
TCCGGCGTCACAATGTCTGGGTTGCACTCGTGCGATAGTGCCCTCAGATT
TGGGCTATGTTCTTGCCCACAGTGATACTCTCTACATGTTGTGCTGGCCG
CACATTCGGCCAAGAGGCAAATGATCCAATTCAACGCCTTCTAAACACCC
TTCGTTCCGCTGTCAACACCGCGGTTCTGTTTTCTTGCTTGCGGACTTTC
TCGTCCCCACCCCTCTTGCTTGTTAAAAGGATCTTCGAAAAAAGGCGAGG
GAAAGCGATCAACATGATGCAGGCTCCGACCGTGCTTGGATGTTGTTTCT
ACCGTGGCGCATGGTCTTTGCTGTCGCAATTTGGTAGTGCGACTCTCCAC
CAGTAAGAAGAATGTAGATTTTCAAGCTGCAGGGTACAGGATACCTCCGC
ACTGATGGTTTTGATTGGAGGTGGTGTTGATTGGGTTTGCGTTGGATGCA
TTTTTCGTCAGCAAGAGTTGGACCCTTCACTGTGCATCAGCAGTAGAAAT
TGACCGCTCTTCTTCGAGCTGGACTCATGAAGCATCCATGGGACCGACCG
ATTGAATTAAGCTTCCTTGGCGTGAGGCATGATGTTGCTGCCTGGGGCGT
AGCTTTTGTGCTGCGCAGCTGTCTCTTGTCGTTCACGCCACCTGTTCTGG
CTGGTGGCCTCGCAACAGTCCTGGAATGCAAGCAGAAGTAGCAGCATATT
TGCACAGAGGTGTACATTATGGTCAAGTTCGTATGTATGTTTGGTTTGTT
CCCAAATGAAAACAGCTGACATAATATGGAGAGTAGGACTTGCAGAAAAC
ATCAACAAGGACAACATGTTGAGGTGCATGTATGTATTCGTTCTGCAAGG
ATGCGCCATGTACACATCACTTCAAGACTCACAAGAGCTCCTGCTGACG back to topCoding sequence (CDS) from alignment at Scaffold_441:252782..255330- >EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)
ATGAACAAGAATGTGGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCC
CCACAGCAATGTCCGTACTGGCAACAAGGTTTTGCGCAAGAACATCATTG
GCCAGAAGATAGCAGAGTACTACCCGCAGACTACAGTCCCGGACATGGTC
AAAATGGCGGAGAAGGAGATTCCTGGCGTTATCATGGACCACAAGCGAGA
ATGGCGACGACAAAAACGTGAACTAGACGAGGGATCAAAACGAGGATCTT
CGAAAAAAGGCGAGGGAAAGCGATCAACATGA back to top
|