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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRT4 |
| ProteomeId | EsuBft100_12 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR12309 |
| Protein domains | IPR023391 |
| Protein domains | IPR022943 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR001901 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR008158 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | protein transport protein sec61 subunit gamma os:caenorhabditis elegans gn:emo-1 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2052 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.28e-41 |
| EggNOG OGs | COG2443@1|root,KOG3498@2759|Eukaryota |
| Ec32 ortholog description | Protein translocase SecE domain |
| Ec32 ortholog | Ec-08_002350.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | SEC61G |
| KEGG ko | ko:K01262,ko:K07342 |
| KEGG TC | 3.A.5.7,3.A.5.8,3.A.5.9 |
| KEGG Pathway | ko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110 |
| KEGG Module | M00401 |
| GOs | GO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680 |
| EC | 3.4.11.9 |
| Description | P-P-bond-hydrolysis-driven protein transmembrane transporter activity |
| COG category | U |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko02044 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0001555 |
| GO | 0006412 |
| GO | 0002479 |
| GO | 0002119 |
| GO | 0030728 |
| GO | 0030176 |
| GO | 0009792 |
| GO | 0015450 |
| GO | 0071806 |
| GO | 0018996 |
| GO | 0006614 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_12a-0001 ID=EsuBft100_12a-0001|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2052bp|location=Sequence derived from alignment at Scaffold_441:214676..219185+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTGTCACCGTCACTGATCCATCAACGCCCTTCTTCAACGCCGCGTAGCG
CAAAACGAAGTCACCATGTCAGACGTCAATGAACTTTTGATTCAACCCCT
ACAAAAGTTCTCCAAGGACTCGATGCACCTCATCAAAAAGTGCACAAAAC
CCGACCGAAAAGAGTTCATGCAAGTGGCCAAGGCCACCACAGTCGGGTTC
CTGGTCATGGGTTTCATTGGATTCTTCGTCAAGCTCGTCCACATCCCAAT
CAACAACATTTTGATGGCAGGATGACTTGACTAGGACTCGTTTGGGAACC
GCTCGGCGGAATGGGGAATACGATGCAGCTTCGAGTCTGGGTGCGTGGTG
AAAAACGCAGTGATCGCCGAATATCATGATGGACGCCGGTTGCCTCGTGA
ACCGACTTAAGAGTCAGCCAAGCGAATAGTCTCGTCACGTCAAAGTACTT
GGCTTCAAAGTACGGGTGATGTCCGAAGGGATCGGTAGGATCGGATAGAT
GCTCCTCGGAAGATGGGCACCGCGGGGCGCGCAAGACATTTCGAACGACG
GAGATACGTCCGATAACGGTGTGGTGTACCGTTGCGTTGCTGTAGGTATG
ATGTTTGGATGTTTTGTTGTGAACGGCTGGTGCACGATAACGGTGTTGTT
TAACACGGGAGAATGCTCATCTGATTTTATGTGTCTGGACGTAGTGTCCC
AACACCATGAAGGGTCACGCCGTTTTTCCACTCGGTACTTGGGCTCCCGT
CAAGCATGTCGCCTGGTCGTGTTTCACCCTCAATGCTGACACCGTTGTCT
GAAACAGAATCGGTGTCGAGTTCAAAGTGCCTCTGTCCAGTGCAAACACC
CAACAAGGGTGCGTGAGGATGAAAGCATACGCTCCCCACAGCGTCAGTCT
GATTTTCGAGCGAACCGACAAGAGATTGGCTTTCAGTGTCGTAGACAAGG
GCCCGTCGCTCTGTAGAACCAGTTGCCAAGTACCGCCCGCTTGGATCGAC
GTCAAACCCAATTCGCTGGTTCGTGTCCACTTGACGTGGGAGGGTGTAGA
TTGCCTGCGAGTGGGATGCACAGCATGGACGACATGGCGAGGGAGCGTTG
GATGTCACGGCATTTTTTCAACACAAAAGCGAGTTAAACCGAGGTACGCT
ACATGCATTGGATGGTCCAGTCAAATCATGCCTCCCCTTGTGATCAATCC
ACCGTCAAGGGCATATACTCCTTTATCTTTGCTGGAGTTCGTAGCTAAAA
GCCCTCAGTGTTTTGCGGCACGAACACACCATGGTTGGATCAACTCCGAA
CGTGAACGAGCGGGAGCAGAAAGAAGAGGCAACACGGAACGATGGAGGCG
CCCAATCAAGGCCTCCCCCCGTGTTTTTCAACCCTGGCCGGAGGCCTACC
ACGTTTTCTACCCGCTTCGTATCCGGACTGAGAGGAAAGCTCACAACAAG
ATGTGATTTGTCTGGTGGGCGGTCCATCTCCAGGGTCTCTCGCGACAAAT
CGATTAGGAGATGAGGGGACTTTCGCAGACGCTTCCAGAAAAAGTCACGG
GCCTTTGATGCGCACACATAGCCTTGCGGAATGTCTCAGATGGGAATGCT
GTTGTGGCGTCCAAGGTTACTCACCTGTTTCGTTTGCCGAAGGTCCCAGC
ACACGATGGCAGTGTCCTTACGTGAGCCAGAGAAGAGATACCGGCCGTTG
GGTGCAAACTTGAGGTGTGTAACGCCGCCCATTGTTGGCGTCGCCAACTC
TGCTACAGCGCGTGCACGACTGGAAAAAGCGGACGTAACGAAGGGAGCTT
GGTTTTGAGTATGCCGCAGTACCTGTCACTGGGGGCTACAATATGCGTAC
GAGCAGCTCAAATCGTACCATCACACAAATCATCTTGCCATATTCATTCA
TTGACAGCACGCGCAGGCAGGCAGGCTATTGGGCGGCGATACCATACTGC
GCATACCCATCACGTCGCCCTGATATATCGCATCACCTCCAGCAAGATGA
AACCACTGGCAACAGCTCTCGAAAACGATACGGTAACGCCAAACTTATGC
CT back to topprotein sequence of EsuBft100_12a-0001 >EsuBft100_12 ID=EsuBft100_12|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGF
IGFFVKLVHIPINNILMAG back to topmRNA from alignment at Scaffold_441:214676..219185+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_12a-0001 ID=EsuBft100_12a-0001|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4510bp|location=Sequence derived from alignment at Scaffold_441:214676..219185+ (Ectocarpus subulatus male Bft15b)
GTTGTCACCGTCACTGATCCATCAACGCCCTTCTTCAACGCCGCGTAGCG
CAAAACGAAGTCACCATGTCAGACGTCAATGAACTTTTGATTCAACCCCT
ACAAAAGTTCTCCAAGGACTCGATGCACCTCATCAAAAAGTGCACAAAAC
CCGACCGAAAAGGTTAGTCAAACTTTCGTTCTGTTTCGTCGTCTGAGGTG
TGGTACGAGGGCATTTGGACGTTTGTTGTAGTTGCACCCAAGGCCTGTTG
ATAGCCCGTCGACACCGCCCAGCATCGATTCCCCTGTCCATTGCCACCAC
TGGAGTCCATGCGAGTGACTGGCTAGGGGGGTGTTGGGTCGTTAGGCTCC
GAAAAGAGAAAGAGAAACCCAGGGTGTGTGCGGTGTGCGGGCCCTATGTA
GCGAACGAAGCACAGGTGTCCAACCATCATCAGACTATCATTGAGACAGC
AGACTACCTCCATAGGGCCAGTGCCCAAATGATGGTGTTCGTGTCGTATT
GAACGGCGTCCGGTACGTGACACATTAGTTTTGTTCGCGTAACGGTGAAA
AGCAGATGCCATTACTTTATGTCAAGACAACTCGACGATTCTTGTCAGCG
ACGTGCAGACTTGCGCTCCGCTGACCACATCAGTAGGTTACTTAAGATAC
CACATCTCGGTGTGATACCATCGTGAGATATAGACTAAAGAGTCTATCAC
AAGGGTGCGGGGTGTGATATTATGTAGGGGGTGCGGTGTCATGCGGCTAG
TATGTGTGATGAAGTACACTCACAGGCCCCCCATCCGGCCGCTCCGATAC
ATATGACGGTGTGATGACCTCAGCCAGCCACAGCAGTTCACGCACACGAC
TTGAGAACGAGGTGCGACTTGCTTTTCGGTGAAGGCGGTGGTGCGGGCCT
CAGCAGTATGTGTGGTGTGATGCATGGCTGGTGAAGGAGTCTCAGCAGGT
ACTGCTCTTGTCCAGAAAGGAATGGCGTGTCTGAGCGTGCAGATTGGAGG
CACCATGGGAGTCTGTCTGACCCACGACCGTTTAAGCCGTATGCTCCCAG
TTGGGGTTGTACTGCATCGACGGCGGTATTATTGATATTCATGGCTTGTG
ACCACGGAAGGCATCGGCGTCAGTTAGACCAGTACGGACATTAGAAGGTA
CCGAGCGGAGACCGGAACGGCTTTCAATGTGAAGACAACAACAACAGCTA
CAAAAACGCCTGTGGCTCGCACGTTGCGCTTGTTTGTGACGCTGCTCACA
TGGTTCGATACGGGGGGTGCCGTGGATAGTGCACGGCTCAACGTGAGGGT
GTGGTATGCTATGTGATCGTGTAATTCAGCAGTACTCCTGTTTTGGTTCT
TTTTTCGGGACTCATAACAATTTGCGCAAGGGTATTTTTCTGTTCGTTTT
TGAAGGGGTTGTGGCATGTCGGTCACCTACGGTACATCGAGGCGGGAGAC
GTTGAGTACCGCCTATTAGGTGGGATACCCAGATATGTCCTCATCCACAG
AAAGATCGAAAAATATCGCTCCTGTTATTTGGGGGTGTACTGTGGTATGG
TAGTGCCAGAACTTGAGTTGGGGCATACCAAACTGCTGAATTTCTGCAAG
CCAAACTTGTGGATCTACACTGACCAGAAGCAACCAGCAGAGGAACAACG
TGGCATGACCACGTGTAAATTTTGGTAGATTGCCCGATTTGGAATCTGGG
TGTGTGGTGGAATTTCGATAGCCGTTCGTGGGAGAGCTAGGATGCCTTGC
GAAAAGCGTTGGAAAACGCATGTAACCTCACGTTGGCACTCGGTGCTCGG
CATCAAGACGTTCATGACTACAGATGCTCCGTGGATTCTGACGTGCCCCT
CTGTAAAAGATACGACTGAGACGATTAGTGACTCTAGACTGCGGTCAAAA
ACGCAATGGGAGAAAAGTTGCAATAGGTACAACGCTGTCAGCCCACAGCA
AGGGAGGTGGGGAAACGTACGGGCGACAGGATTGAATATGGTCCTTTGGG
TGGTTCACGTAGCAACGTTGCAACCCCCTACACGCTGCTGGCCTGTGTTG
TGTATTGGCTTGATTTGATACGCAATTCTGAGGGAGGAAGCAGTGAATAA
CCGGCACCATTGATAGCAGCGTGGCACCATAAAAGGGCGGTGAGCATTCC
TCTGTACAGTCACAGGCCGCAGGCAGATTGCGAGATCGTACAGCGCTCGG
GCGAAGTGAATGATTCCTGGAAAGGGTGCCGACGCAGTAGTCTTCGAAAA
CATTGCGACTTTCCTCGAGTACCACCGAAGCGCGCGTGGTGTGTAGATGG
TGACCGCCTTTCCTTTGGACATTCGAATAACTGCCACTCCACCTCATAAA
CGACCCGTTTCCTTTGTATGGCAATGTCCGCGCAGAGTTCATGCAAGTGG
CCAAGGCCACCACAGTCGGGTTCCTGGTCATGGGTTTCATTGGATTCTTC
GTCAAGCTCGTCCACATCCCAATCAACAACATTTTGATGGCGTAAGTTTC
GGGCGCATGTGTGTAGAGCAAAACGCTCATGTCCTCTCCAGTTGCGATAA
AGATTCATCCAAATTTCGAAGTTGATCACTTGCCCTTTCTCTGTGAAGCG
ACCCATAACCCGTCCACTGTCGTGTTTCTTTTGGTGTCTATGCCTCTGCT
CGTCTCTCGGCTTTGCCCTTTTTGTGCCCCTCTCCTCTCTAAATTCCCTC
CGGGCTCACGCGACCTATATCTTCAGAGGATGACTTGACTAGGACTCGTT
TGGGAACCGCTCGGCGGAATGGGGAATACGATGCAGCTTCGAGTCTGGGT
GCGTGGTGAAAAACGCAGTGATCGCCGAATATCATGATGGACGCCGGTTG
CCTCGTGAACCGACTTAAGAGTCAGCCAAGCGAATAGTCTCGTCACGTCA
AAGTACTTGGCTTCAAAGTACGGGTGATGTCCGAAGGGATCGGTAGGATC
GGATAGATGCTCCTCGGAAGATGGGCACCGCGGGGCGCGCAAGACATTTC
GAACGACGGAGATACGTCCGATAACGGTGTGGTGTACCGTTGCGTTGCTG
TAGGTATGATGTTTGGATGTTTTGTTGTGAACGGCTGGTGCACGATAACG
GTGTTGTTTAACACGGGAGAATGCTCATCTGATTTTATGTGTCTGGACGT
AGTGTCCCAACACCATGAAGGGTCACGCCGTTTTTCCACTCGGTACTTGG
GCTCCCGTCAAGCATGTCGCCTGGTCGTGTTTCACCCTCAATGCTGACAC
CGTTGTCTGAAACAGAATCGGTGTCGAGTTCAAAGTGCCTCTGTCCAGTG
CAAACACCCAACAAGGGTGCGTGAGGATGAAAGCATACGCTCCCCACAGC
GTCAGTCTGATTTTCGAGCGAACCGACAAGAGATTGGCTTTCAGTGTCGT
AGACAAGGGCCCGTCGCTCTGTAGAACCAGTTGCCAAGTACCGCCCGCTT
GGATCGACGTCAAACCCAATTCGCTGGTTCGTGTCCACTTGACGTGGGAG
GGTGTAGATTGCCTGCGAGTGGGATGCACAGCATGGACGACATGGCGAGG
GAGCGTTGGATGTCACGGCATTTTTTCAACACAAAAGCGAGTTAAACCGA
GGTACGCTACATGCATTGGATGGTCCAGTCAAATCATGCCTCCCCTTGTG
ATCAATCCACCGTCAAGGGCATATACTCCTTTATCTTTGCTGGAGTTCGT
AGCTAAAAGCCCTCAGTGTTTTGCGGCACGAACACACCATGGTTGGATCA
ACTCCGAACGTGAACGAGCGGGAGCAGAAAGAAGAGGCAACACGGAACGA
TGGAGGCGCCCAATCAAGGCCTCCCCCCGTGTTTTTCAACCCTGGCCGGA
GGCCTACCACGTTTTCTACCCGCTTCGTATCCGGACTGAGAGGAAAGCTC
ACAACAAGATGTGATTTGTCTGGTGGGCGGTCCATCTCCAGGGTCTCTCG
CGACAAATCGATTAGGAGATGAGGGGACTTTCGCAGACGCTTCCAGAAAA
AGTCACGGGCCTTTGATGCGCACACATAGCCTTGCGGAATGTCTCAGATG
GGAATGCTGTTGTGGCGTCCAAGGTTACTCACCTGTTTCGTTTGCCGAAG
GTCCCAGCACACGATGGCAGTGTCCTTACGTGAGCCAGAGAAGAGATACC
GGCCGTTGGGTGCAAACTTGAGGTGTGTAACGCCGCCCATTGTTGGCGTC
GCCAACTCTGCTACAGCGCGTGCACGACTGGAAAAAGCGGACGTAACGAA
GGGAGCTTGGTTTTGAGTATGCCGCAGTACCTGTCACTGGGGGCTACAAT
ATGCGTACGAGCAGCTCAAATCGTACCATCACACAAATCATCTTGCCATA
TTCATTCATTGACAGCACGCGCAGGCAGGCAGGCTATTGGGCGGCGATAC
CATACTGCGCATACCCATCACGTCGCCCTGATATATCGCATCACCTCCAG
CAAGATGAAACCACTGGCAACAGCTCTCGAAAACGATACGGTAACGCCAA
ACTTATGCCT back to topCoding sequence (CDS) from alignment at Scaffold_441:214676..219185+ >EsuBft100_12a-0001 ID=EsuBft100_12a-0001|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_441:214676..219185+ (Ectocarpus subulatus male Bft15b)
ATGTCAGACGTCAATGAACTTTTGATTCAACCCCTACAAAAGTTCTCCAA
GGACTCGATGCACCTCATCAAAAAGTGCACAAAACCCGACCGAAAAGAGT
TCATGCAAGTGGCCAAGGCCACCACAGTCGGGTTCCTGGTCATGGGTTTC
ATTGGATTCTTCGTCAAGCTCGTCCACATCCCAATCAACAACATTTTGAT
GGCAGGATGA back to top
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