|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRU1 |
| ProteomeId | EsuBft100_5 |
| Protein domains | SSF47473 |
| Protein domains | IPR002048 |
| Protein domains | IPR011992 |
| Protein domains | SignalP-noTM |
| Protein domains | IPR018247 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 233 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Evalue | 1.54e-05 |
| EggNOG OGs | 28NP9@1|root,2QV8Y@2759|Eukaryota |
| Ec32 ortholog description | Putative sodium calcium exchanger |
| Ec32 ortholog | Ec-08_002440.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| GOs | GO:0000325,GO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0006950,GO:0006970,GO:0008150,GO:0008324,GO:0009506,GO:0009628,GO:0009651,GO:0009987,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030054,GO:0031090,GO:0033554,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055044,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071214,GO:0071470,GO:0071472,GO:0072507,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0099516,GO:0104004 |
| Description | calcium:sodium antiporter activity |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005509 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_5a-0001 ID=EsuBft100_5a-0001|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2330bp|location=Sequence derived from alignment at Scaffold_441:119387..123201+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACTCGTCAAATTCTGGTTGCCTGCTGGACGAACCACCTTTTGCTACT
CAAGGAGCTGACTGCTATCTTCGAAAAGATCGACACGGACCGGTCGGGTC
AAATCGACTTCGATGAGTTCGTGACCGGTGTGGCTAAGTTCGTCCTGGAG
AAAAGTCCGACCGGTACCATCAGGTAAAGCAACGCCTACTATACTGTTGG
ACACTACAACTTGATGGTGTTTGGACTGCTTTCGTCGTGTCTTTACAAGC
AGATACTGCTGTCTGTGTGCTCCTGTTGTGCAAGCGTTGGTCCTTGGACA
CTTTGATCGCCTATGCTGACGCGCTCACTGGGTACCATCTGCCCTTTTTT
CGTGAGTAGCTTTTTCGGCTTGGGCTTCGCCGTTTTAGAACCATATACCT
TTTGTTTTCGTTGAACCGGAATGGCTTACTGAACCTACCCGTTTCCAGCC
AGGACTCGTCACGTGTTAAATGTGGCTCTCTCACTAGCCAACTAAGTTTT
TCTGGCCATTTCTCCGTCTCAGCAACCCTCCGCCGGCAGCAATCGACGAA
GCGGCGGATGACGGTGATTCCGAAGAGCACGAAGAGGTCAGAACTATTCG
CAGTTTCATATGTATGTCATGTTTTTCGAAACAAGAAAGTCTTGAATCGT
ATCTGATTCGAATCAAGTTCTGCTCAGCAGCTTGTGGAAGTAGGCCCGTG
AGCCCGTACTGTATTATCTTGGTAAATAATGGTCGAGATTTTGCTGCATT
GGATTCTGCGAGAACTTTTTGCCCTTGTATCGAACAGCAGTTGTTTCGCA
CTTCGTACATTGCCTCCCTGTGTGTCGTGTCCCCTTGAATCTGTACGGTG
TTATGTCATAGATGCCGGAGGATCTGGCACACCTCAAACCAGAGGAACAG
CAGTACCACGTCAAGATGCGCGCGGCTTACCTCATGACGGTCGGGACAGC
CCTCGTGCTCATTTTCTCAGGTGTGTCGATTCGCTGGTTGCATTCTTTAC
CTTGTACGATGTACATACAGGGCGGTAATGGCTGTGATGTCCTTGCGAAA
CACATTCAGGGTGGTCGACGGAGTTATGGTGCTCTCCCTCTACCCGCTGT
CTCTCATGGTGGTGGCTGGGTTGGAGGCGTGTGGCTGGGATTGATTCGCT
CCTACACCCACACCGTTGTGTTTGGTGCATGCAACGAGTCATCTCGTGCA
CATGAATCGTGGAGTAACAAATACGGCGTCCATTGTTTTGTTTGTTCTTT
CTTGGCGCATCGTGTGAAGAGTGAAGACAGCAGTGACTGACTTCTTGAAA
ACAACCCCTTTCACGCAGAACACCAACCGGTTCCATGTTCATACGCGCAA
CTATGCCGCACTCGAATGTTTACCTCTTGTACATGTGGTGTTTACACACT
CCGAGCCTTGTCGCTGTGAGTGGGTTGTAGGGTAGGAAGCACGCGTAATA
CGTATGGATGATTTGTACATCATACATTGCACGGTTGTTGATTTTCGTCG
GGCGCAGGGCAATGCCACATTGGTTGGTGCTCATGGCTTCGATGGTCGTG
TCGTTTTTACGACGCTTCTCGTATATTGCTATTTCGTGTTCCTTCGTTAG
GCTCCTCATGAAATGTACCATTTCAGTCCCGTTAGAACAGCCTCGGTAGA
GCAAGTACGCCTCACCACCTAGGGTGTCTCTTTGGCTGTTGGCGTTCTTC
CCTCATGTAGCCTTCATTGTTTTCCTCGCGTGACAAAGGTCTTTCGAGAC
CGTGCTGTTGGTTTGCCATGTTACCGCTCTTAGGACTGCGGAGTATTGTT
CATACCACGGGCGGTGATCGGATGTTCCGAAGTCGGGGGGGGGGGGGGGG
GGGGGGGGGCGGGCGGCGTATTTGACGTTGTGCTTGGTTATGTTGGACCG
CCGCCAGCAGCAGCAGCAGTTTAGAACAGCTTGTTTACCTTAAAACCAAG
AATAGTTTACGTACCGTAGCACCTGTTTTCCTTTGCCGATAGGATGCCGG
CGTGTGCTCATCAAACCTGAGTACTTGACCTCAAGTGCGCAGCCGATTTC
TTCGCCCACCAAACAGGCTCAAGTGGGTGAGTCAGGGTACGCACCGAGAG
ACGGTTCGCGTTGAGAGGGGTCAAATGGTCGCATTATCCTTACGTGTAGC
TGAACCCGATAAGAAAGCGAAGTGTGGGTTTGGATATGCAGAATTGAGGA
CTTTTTACGCCTTACCCTACATTGTAGAAAGCAGTAAAATGTTGTGAACT
GTTGTAGTCTAGCTGCTTCGAACAAATCTACTTCCAACAAGAACTGCACG
TACATGGTCCACAATATTCTCTCAAGTCAT back to topprotein sequence of EsuBft100_5a-0001 >EsuBft100_5 ID=EsuBft100_5|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MTRQILVACWTNHLLLLKELTAIFEKIDTDRSGQIDFDEFVTGVAKFVLE
KSPTGTIR back to topmRNA from alignment at Scaffold_441:119387..123201+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_5a-0001 ID=EsuBft100_5a-0001|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3815bp|location=Sequence derived from alignment at Scaffold_441:119387..123201+ (Ectocarpus subulatus male Bft15b)
ATGACTCGTCAAATTCTGGTTGCCTGCTGGACGAACCACCTTTTGCTACT
CAAGGAGCTGACTGCTATCTTCGAAAAGATCGACACGGACCGGTCGGGTC
AAATCGACTTCGATGAGTTCGTGACCGGTGTGGCTAAGTTCGTCCTGGAG
AAAAGTCCGACCGGTACCATCAGGTAAAGCAACGCCTACTATACTGTTGG
ACACTACAACTTGATGGTGTTTGGACTGCTTTCGTCGTGTCTTTACAAGC
AGATACTGCTGTCTGTGTGCTCCTGTTGTGCAAGCGTTGGTCCTTGGACA
CTTTGATCGCCTATGCTGACGCGCTCACTGGGTACCATCTGCCCTTTTTT
CGTGAGTAGCTTTTTCGGCTTGGGCTTCGCCGTTTTAGAACCATATACCT
TTTGTTTTCGTTGAACCGGAATGGCTTACTGAACCTACCCGTTTCCAGCC
AGGACTCGTCACGTGTTAAATGTGGCTCTCTCACTAGCCAACTAAGTTTT
TCTGGCCATTTCTCCGTCTCAGCAACCCTCCGCCGGCAGCAATCGACGAA
GCGGCGGATGACGGTGATTCCGAAGAGCACGAAGAGGTCAGAACTATTCG
CAGTTTCATATGTATGTCATGTTTTTCGAAACAAGAAAGTCTTGAATCGT
ATCTGATTCGAATCAAGTTCTGCTCAGCAGCTTGTGGAAGTAGGCCCGTG
AGCCCGTACTGTATTATCTTGGTAAATAATGGTCGAGATTTTGCTGCATT
GGATTCTGCGAGAACTTTTTGCCCTTGTATCGAACAGCAGTTGTTTCGCA
CTTCGTACATTGCCTCCCTGTGTGTCGTGTCCCCTTGAATCTGTACGGTG
TTATGTCATAGATGCCGGAGGATCTGGCACACCTCAAACCAGAGGAACAG
CAGTACCACGTCAAGATGCGCGCGGCTTACCTCATGACGGTCGGGACAGC
CCTCGTGCTCATTTTCTCAGGTAAACCTCGCAGCTGTCCACCTGGCAGAC
GGGCCCCTTCTCATGATCTACGCCAATTTCGGAGCAAGTTTCTGTCCACG
GACAACCTTCGTAGTGCAACACGGAATTTACAACCCTTCAGCACTATGCA
TACTAGCGAATCAAGCAGGGTTGGTTTAGAATCCCTCCTGCTGTTGTTCG
TTGAGCATGGTTTGTTCGACGCTCATGACCAGATAGATAGGGGCAAGGAA
GCATCGTAGTGCTATAGTGTAGTCCGACTGGAACTTCGGGCGTGCTGCTT
GAAGGGCTCGTGTTGCGCGTAATACAGTAGAAAAGCACAGAATTGTCCCC
CTGCACCATCCAAGCGCGCTCAATTCATGATTTGGGACCCTGACATTATT
TGAAACACGTTGCAAATGGACGACGGGCAGGTATCTATGCAACAGCACGA
CGAATCGATAACCCTGTGTCATATTGGGGAGGTCTGCGAACTGTGGCGGG
CCGCCGTTAACCCCCCTGGACCTAGACAGCTGCAGAGCTGCCGTGATGTG
CTCTTGCTGAGCACTTGTATCTCTTCCCCTCGTCGTCCCGTATCCCAAAA
TACTAGAGCGAAACAGAGACAGTTCTTACAATTTCTCAAGGCCAGCCGTG
CGCGGTGACCAGGCTTGTCCTCCAAGAAGGGTTGCGCAAGGCCCGGGCGC
ACCCGAAGAGCGCGCGCCAATGCACAAGGCAACTCTTACATGCTTTTGAC
GTTGGTGATGCCTTTTGTTGCGACAGATCCCATGGTGGACGTGCTCGGAG
TCCTCGGCGACCGCACGGGAATTTCGTCCTTCTACATCTCGTTCGTCTTG
GCGCCGCTCGCGTCCAACGCTAGCGAGCTCATTGCCGCCTTCAATTACTC
TCTCAAGAAGACCAGTCGCACGATCGTCATCTCTTTCGCAGCACTGCAGG
CGAGAGAGACTGGGGATAAAAATTTCGTTGCTTGCTCCCACTGTGTGCGT
TTGAAATGTGCGTTGTTTGTCTTGGATGTTCGCCACGCTTTCCCCGGTCA
CCAGTTCTCATCTTTTTGCAAGATTCGCACCACATATGCCCCCTAACGTA
AATGGAGTGCCTCCCTCCTCTGAATATATTCCAGGGCGCCGCATGCATGA
ACAACACGTTCTGCCTGGGTGTGTTCATGTTTCTCATCTACTTCCGGAAC
CTAGCATGGGAGTTCAGCGCGGAAACGGTCACCATCCTCCTAGTGCAGGT
GTGTCGATTCGCTGGTTGCATTCTTTACCTTGTACGATGTACATACAGGG
TATGTTGATCGTTGATCTTGTTCTGTCATTGTGATGCGAATGCTGCTGTA
TGTGCCTGCAAGCAGCAAGCACTGCTAGAATCTGGACAATCCGGACAATC
CACGGCATGCCCCCCCTGTGCGGTTTCGCTTGCGACTTACATGTAGCCAC
CGTCGCATCTCGCCTTGCTGGATTGAATGTGGTGTTGCCCGCTGAACTCA
CATGTGGTAACGGTCGCGTTTTGTTTGTACGTCGTTGTCGGCTCGTGTGA
CTGCAGGCGGTAATGGCTGTGATGTCCTTGCGAAACACATTCAGGGTGGT
CGACGGAGTTATGGTGCTCTCCCTCTACCCGCTGTCTCTCATGGTGGTGG
CTGGGTTGGAGGCGTGTGGCTGGGATTGATTCGCTCCTACACCCACACCG
TTGTGTTTGGTGCATGCAACGAGTCATCTCGTGCACATGAATCGTGGAGT
AACAAATACGGCGTCCATTGTTTTGTTTGTTCTTTCTTGGCGCATCGTGT
GAAGAGTGAAGACAGCAGTGACTGACTTCTTGAAAACAACCCCTTTCACG
CAGAACACCAACCGGTTCCATGTTCATACGCGCAACTATGCCGCACTCGA
ATGTTTACCTCTTGTACATGTGGTGTTTACACACTCCGAGCCTTGTCGCT
GTGAGTGGGTTGTAGGGTAGGAAGCACGCGTAATACGTATGGATGATTTG
TACATCATACATTGCACGGTTGTTGATTTTCGTCGGGCGCAGGGCAATGC
CACATTGGTTGGTGCTCATGGCTTCGATGGTCGTGTCGTTTTTACGACGC
TTCTCGTATATTGCTATTTCGTGTTCCTTCGTTAGGCTCCTCATGAAATG
TACCATTTCAGTCCCGTTAGAACAGCCTCGGTAGAGCAAGTACGCCTCAC
CACCTAGGGTGTCTCTTTGGCTGTTGGCGTTCTTCCCTCATGTAGCCTTC
ATTGTTTTCCTCGCGTGACAAAGGTCTTTCGAGACCGTGCTGTTGGTTTG
CCATGTTACCGCTCTTAGGACTGCGGAGTATTGTTCATACCACGGGCGGT
GATCGGATGTTCCGAAGTCGGGGGGGGGGGGGGGGGGGGGGGGGCGGGCG
GCGTATTTGACGTTGTGCTTGGTTATGTTGGACCGCCGCCAGCAGCAGCA
GCAGTTTAGAACAGCTTGTTTACCTTAAAACCAAGAATAGTTTACGTACC
GTAGCACCTGTTTTCCTTTGCCGATAGGATGCCGGCGTGTGCTCATCAAA
CCTGAGTACTTGACCTCAAGTGCGCAGCCGATTTCTTCGCCCACCAAACA
GGCTCAAGTGGGTGAGTCAGGGTACGCACCGAGAGACGGTTCGCGTTGAG
AGGGGTCAAATGGTCGCATTATCCTTACGTGTAGCTGAACCCGATAAGAA
AGCGAAGTGTGGGTTTGGATATGCAGAATTGAGGACTTTTTACGCCTTAC
CCTACATTGTAGAAAGCAGTAAAATGTTGTGAACTGTTGTAGTCTAGCTG
CTTCGAACAAATCTACTTCCAACAAGAACTGCACGTACATGGTCCACAAT
ATTCTCTCAAGTCAT back to topCoding sequence (CDS) from alignment at Scaffold_441:119387..123201+ >EsuBft100_5a-0001 ID=EsuBft100_5a-0001|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_441:119387..123201+ (Ectocarpus subulatus male Bft15b)
ATGACTCGTCAAATTCTGGTTGCCTGCTGGACGAACCACCTTTTGCTACT
CAAGGAGCTGACTGCTATCTTCGAAAAGATCGACACGGACCGGTCGGGTC
AAATCGACTTCGATGAGTTCGTGACCGGTGTGGCTAAGTTCGTCCTGGAG
AAAAGTCCGACCGGTACCATCAGGTAA back to top
|