Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6669.EFX68856 |
| ProteomeId | EsuBft100_3 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 1482 |
| Evalue | 1.19e-57 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Jerky protein homolog-like |
| COG category | BD |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_3a-0001 ID=EsuBft100_3a-0001|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1482bp|location=Sequence derived from alignment at Scaffold_441:108531..110349- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGACATCAGGGCCCTTTGCGAGAAGTACCCGGCTAGGTTCATCTT
CAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGT
ACCTTTCCACCTTGGAGGATCGGACGACGGCGCGGGGCTCAAAGAGCATG
CACTTCAAGGACCGACTGTCTGCCATCATGTGCTGCAATGCCGACGGCAC
TGCGAAGGTTGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCT
TCAAGAACGGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGG
TCCGACTCCGCGACGTTTCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTT
CGTTCGGCGCTTCAATCACGAACCTGCGCTGCTGCTGATGGACGGCTGTT
CGTCTCACAGTGATTTAGTGGACGATCGCGGGCAAGTTACCGTCAAGACC
TACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCAT
CGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACAT
CAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAG
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCG
GGACGCCGCTGAACTTCTCCAGAAAGAATGGGCCAGCGTCACCGCCCAAG
ACATCGCCAGACCCNTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTG
GACGAGGAGATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAA
GCCGGTCGCGGGGGAAGAGGTGGCCGCGATTCAGGGGTGGGCTACCATCG
AGGACGACGAGGAGGTGGTAGAGGCTTTTCGATTGGACGCGGTGGAAGAC
ATGACAGCACTGCTGGCTGGAACGAACTTATCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACTAGGGAGGCGGCGGTGAGAACACGGGGCGCGAGC
GCCGTGCCCCACGTGCGCCACCGGGTTATGAAGAACTGTCGTCGCACTTC
GGCGCCCTGGAAGTGGCAGCAGAGGGCAGTGGCAACGGAGACGCGGCGTC
CTACCTAACGAAAGTGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGC
GGGTGCGCCAGACAGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGG
TTGTTTCTTTTTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTA
ATTTTTTTTCTCGCAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGT
GTCGCGACGTAGTTTGGGGGGGAGATACAACTGTAGTGCAGTAATATTGA
TTTTTGTTTTCTTGCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTTG
TCTTTTGTATCTTACAACATCGAAGGAGGGGCTCTAGGGCTTACATATAG
CTACGTCCACTCTGTACGAACGGGAGCTTTAC back to topprotein sequence of EsuBft100_3a-0001 >EsuBft100_3 ID=EsuBft100_3|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=322bp
MEDIRALCEKYPARFIFNVDETGLQWKLMPRRTYLSTLEDRTTARGSKSM
HFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLKYFSQTNAW
SDSATFLKWWLEVFLPFVRRFNHEPALLLMDGCSSHSDLVDDRGQVTVKT
YPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARK
MKAGTMGLAQGHQPHVRDAAELLQKEWASVTAQDIARPXQDAQKQGSRVV
DEEISELLAELNIEPGKPVAGEEVAAIQGWATIEDDEEVVEAFRLDAVED
MTALLAGTNLSTGGDDEEDEQD back to topmRNA from alignment at Scaffold_441:108531..110349- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_3a-0001 ID=EsuBft100_3a-0001|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_441:108531..110349- (Ectocarpus subulatus male Bft15b)
ATGGAGGACATCAGGGCCCTTTGCGAGAAGTACCCGGCTAGGTTCATCTT
CAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGT
ACCTTTCCACCTTGGAGGATCGGACGACGGCGCGGGGCTCAAAGAGCATG
CACTTCAAGGACCGACTGTCTGCCATCATGTGCTGCAATGCCGACGGCAC
TGCGAAGGTTGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCT
TCAAGAACGGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGG
TCCGACTCCGCGACGTTTCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTT
CGTTCGGCGCTTCAATCACGAACCTGCGCTGCTGCTGATGGACGGCTGTT
CGTCTCACAGTGATTTAGTGGACGATCGCGGGCAAGTTACCGTCAAGACC
TACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCAT
CGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACAT
CAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAG
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCG
GGACGCCGCTGAACTTCTCCAGAAAGAATGGGCCAGCGTCACCGCCCAAG
ACATCGCCAGGTGAGGTTTGAACATGTTATATCGCTGTTTTAAATGTGCA
CATGCTCGCGCAAGTGCGCATGGCTTTGGTGGTACGTTACGTGGGTAAGG
TTGTACGGATAGGTTTTATTTTTCGACTGAATACTCCCGCAACCGCAAAT
CTCCTTGTTTCTTTGCTAAAAAAAGGCCCTCCCTCGCATCCCTATGAGTC
ATTGTTTGTCACTGGGTTCGTCTAACATCGGTTCTCCACCCAAACACGGG
TGCATCACAATTTCTGCGCGACCTGGCCAGGTGCTTTGTCAAAGCCGAGA
CGCTTGCGGAGGAGATGGCGGCTGAGCTCACCAAGCAACACGGAAAGACC
CNTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAGATCA
GCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGG
GAAGAGGTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGA
GGTGGTAGAGGCTTTTCGATTGGACGCGGTGGAAGACATGACAGCACTGC
TGGCTGGAACGAACTTATCTACCGGCGGCGACGACGAGGAGGACGAACAG
GACTAGGGAGGCGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCCCACG
TGCGCCACCGGGTTATGAAGAACTGTCGTCGCACTTCGGCGCCCTGGAAG
TGGCAGCAGAGGGCAGTGGCAACGGAGACGCGGCGTCCTACCTAACGAAA
GTGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGAC
AGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGGTTGTTTCTTTTTC
TTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTAATTTTTTTTCTCG
CAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGTGTCGCGACGTAGT
TTGGGGGGGAGATACAACTGTAGTGCAGTAATATTGATTTTTGTTTTCTT
GCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGTATCTT
ACAACATCGAAGGAGGGGCTCTAGGGCTTACATATAGCTACGTCCACTCT
GTACGAACGGGAGCTTTAC back to topCoding sequence (CDS) from alignment at Scaffold_441:108531..110349- >EsuBft100_3a-0001 ID=EsuBft100_3a-0001|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=969bp|location=Sequence derived from alignment at Scaffold_441:108531..110349- (Ectocarpus subulatus male Bft15b)
ATGGAGGACATCAGGGCCCTTTGCGAGAAGTACCCGGCTAGGTTCATCTT
CAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGT
ACCTTTCCACCTTGGAGGATCGGACGACGGCGCGGGGCTCAAAGAGCATG
CACTTCAAGGACCGACTGTCTGCCATCATGTGCTGCAATGCCGACGGCAC
TGCGAAGGTTGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCT
TCAAGAACGGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGG
TCCGACTCCGCGACGTTTCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTT
CGTTCGGCGCTTCAATCACGAACCTGCGCTGCTGCTGATGGACGGCTGTT
CGTCTCACAGTGATTTAGTGGACGATCGCGGGCAAGTTACCGTCAAGACC
TACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCAT
CGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACAT
CAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAG
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCG
GGACGCCGCTGAACTTCTCCAGAAAGAATGGGCCAGCGTCACCGCCCAAG
ACATCGCCAGACCCNTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTG
GACGAGGAGATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAA
GCCGGTCGCGGGGGAAGAGGTGGCCGCGATTCAGGGGTGGGCTACCATCG
AGGACGACGAGGAGGTGGTAGAGGCTTTTCGATTGGACGCGGTGGAAGAC
ATGACAGCACTGCTGGCTGGAACGAACTTATCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACTAG back to top
|