EsuBft851_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft851_11a	EsuBft851_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 83614..88589 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_11a-0001	EsuBft851_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 83643..87945 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_11a-0001-exon	agat-exon-101741	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 83614..83801 +
EsuBft851_11a-0001-exon	agat-exon-101738	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 84526..84624 +
EsuBft851_11a-0001-exon	agat-exon-101739	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 84878..85013 +
EsuBft851_11a-0001-exon	EsuBft851_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 85241..85624 +
EsuBft851_11a-0001-exon	agat-exon-101740	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 86877..86985 +
EsuBft851_11a-0001-exon	agat-exon-101742	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 87747..88589 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_11a-0001-exon	agat-five_prime_utr-14408	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 83614..83642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_11a-0001-cds	EsuBft851_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 83643..83801 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_11a-0001-exon	agat-three_prime_utr-22262	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 87946..88589 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:83614..88589+
coding sequence from alignment at Scaffold_441:83614..88589+

spliced messenger RNA

>EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1759bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTATTGGATCTTGACCGCTCCAGGTAGGGATGCCAGCGAGTGATACCAGC
ACCGGCGCGGTGGCACATCCATCTGTAGGCGGCATCGGAGACCGATCATC
ACGTGGTGAAACTTGGGTTTGCAAAACGATAGCGGCAAGCTCTTCGACGC
AGCAGCCACCTCCCAGAGGGGGATGCTCGTGGACGAAGGTTGGCTCAAAG
TTCGTCCTGTTTGGAGGGGCGGACGAACATCAGCAGCACTTGTCCGACAT
CCACTGCTTTGACGCGGCAATAGGGAAATGGGAGAAGACCCCTGTCAGTG
GTGCGCCACCTTCCCCGCGGAATGGTCATTCGGCGGTCGCACTCGGAGAT
TCTTTGGTGGTCTACGGCGGTATGAATGGACAGGATGGTGTGACGTTCAA
CGACCTGTTCGAGCTCCGACCCGGATCTACGGAGGGTATGGAGTGGGTGT
CCCTTCCCTGCGTGGACATCCCTCCTCGCAATGCACACACTGCAGTACTC
GATGGGGAAACCATGATAGTCATCGCAGGGGCTTCCCCGGAGGGACAAAC
GGACGACGTTTTCACCATCGACTTGTCGGATCGTTCAAACTTGGCCTGTC
GGAGAGTGTTCTGCAAGCCGTTCAAATCAGGGACTGGTGAACGACGTTGT
TCGGAAGGCGTTGGAGGAGTACCAGCCGCACGCGAGATGCACTCGACCTG
TGCTTATAACTCCGAGGGGACGACGGGTGAACGGGCGACTACAATATTGG
TCATGGGCGGACGTTCAGCTGGGGGTGTGCTTCGTGACCTGTTTGAGCTC
AGAACAGATACCTGGACATGGAAGCGATTAAAAGATGCTCCTGTTGCCCG
GTGCGCCCATTCAGCTTGTTTCGTACAAGCCGCAGGGACCATGGCCATCT
ACGGGGGATGGGATGGGGGCACAATCGTGGCCGACGATCTTCATCTTTAC
GATGTAGGATGTGGAGAGTGGACGAAACCAAAAATTTCTCCAACACCAGC
TGGTCGTTTCGCTCACGCGGCGTGCGCTGTTGGTTTGGAGGGAGAGATGC
TTGTGTTCGGAGGGGTACACCCTGGAGAGGATCTGGACGATGTTTTGTTG
CTGTCTGCCGCTTGACCTACACGCTGCATGTCATTGGTTCGAAAAGAGAA
GCGGCAAAGCTCAGCCTTTTCAGCAAGCGTCTTGTTCGGAGAACGAAATC
CCCAGCGGTTAAGTTTTGTCTCTGCTGCCCCAATCCGTACGTACCCAGTA
GGGTGTATCATCTCAGACATGCGATCGAAGTTTGGAGTAAATAAGCGACT
CTCGGGTTGTGAAAGTGAGTGAAACGAAAGCATGTAAGATCGAACCGAAG
GTGTGCATGTATCAAACAATCAAGAGAGGGAGCAAGCAGCAGCTGAGACC
AGTCATTGTTTGTGGTACTTCGGTACGACATTCGATCTGGAAGTTATGAA
ATTTTGAAATTATGTGTGTGTGTGTGGGGGGGTATAGTACGTTGTTAGCT
GTTAGGGGTCCAAGTCCGCCCCCCCGTTGTATATATTGCAGGATCCCGTC
ATGACCGATGATAATTTTCTTGCAATTGGGGTAGATGTTGACTCCTAAAC
CCTGGCTCGTTCATCGGATTTTGAGCATACACGAAACATTCATCATTTGC
ATGGGCCCAGACACAGAACCAACGTCGAAACGCGTTCCGTTCTCTAAAAA
GGTACCCACCCCCTCCCTCTGGCCAAAAGTATCATCTATTTAAGAGACAT
ATCCATACT

protein sequence of EsuBft851_11a-0001

>EsuBft851_11 ID=EsuBft851_11|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=361bp
MPASDTSTGAVAHPSVGGIGDRSSRGETWVCKTIAASSSTQQPPPRGGCS
WTKVGSKFVLFGGADEHQQHLSDIHCFDAAIGKWEKTPVSGAPPSPRNGH
SAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPR
NAHTAVLDGETMIVIAGASPEGQTDDVFTIDLSDRSNLACRRVFCKPFKS
GTGERRCSEGVGGVPAAREMHSTCAYNSEGTTGERATTILVMGGRSAGGV
LRDLFELRTDTWTWKRLKDAPVARCAHSACFVQAAGTMAIYGGWDGGTIV
ADDLHLYDVGCGEWTKPKISPTPAGRFAHAACAVGLEGEMLVFGGVHPGE
DLDDVLLLSAA

mRNA from alignment at Scaffold_441:83614..88589+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4976bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)
TTATTGGATCTTGACCGCTCCAGGTAGGGATGCCAGCGAGTGATACCAGC
ACCGGCGCGGTGGCACATCCATCTGTAGGCGGCATCGGAGACCGATCATC
ACGTGGTGAAACTTGGGTTTGCAAAACGATAGCGGCAAGCTCTTCGACGC
AGCAGCCACCTCCCAGAGGGGGATGCTCGTGGACGAAGGTCAGGGCTACG
TTACTTCTACCCTTACTCGTAGAGGTTGGGGTGTAGTCACAAACTGTGTT
GCAATCAGCGAGGTTTTACGCCAGACACGAACCGAAACAAGCTTAAAACC
GCGAAGCCTGCATGCCACAAAGGATGTATCGTCTAGTAGACAAACAGCAA
GAGTGGGCAGAAGTCACCACCGAGAACGCTAGCCCGTGTTTGTTGATGCA
TTCGCATGTGATTTTTGCGCATGGGTCATCCGTTTGGGTGGTTTGGAGAA
CATGGATGAAAACAGGACCGCCGTGTTTCCGTGTTTCCGTGGTCGACGGA
GGAAAGTAGAACGTGCCAGATCATTTCTGCATTCCAGTTGCTGGCAACGA
AGCTAACAGTCACTTACAAGCACCGAACAGCACTGCTATGACAGCCAGCT
CAGCTTATTTCTCGCCAATCCTCTCCTCCGGTTGAGCAAATATCCATGCT
TCTGTCTGTGACACAGGCTTCGAGGTAAGCGATTGTATCTAGTGCCTGTT
CGTGTTGTGCCCACAGCATCAGGAAGCAAACGTAGGATGCAGTGAAACTG
GTGCGTGCATTGTTAATCTTTCAGCTGTCTTGTTGGCGGGCAAGGCCTCG
AATCCGGCCGTCAGCGTTCGATCTGCACAGAAATTTCGCGACCTGTTTCA
ACCTTCTATGCAGGAGTTTGCATGATGTACAGACGATACCTCATGTGTCG
TGTGGCGCACAGGTTGGCTCAAAGTTCGTCCTGTTTGGAGGGGCGGACGA
ACATCAGCAGCACTTGTCCGACATCCACTGCTTTGACGCGGCAATAGGGA
AATGGGAGAAGGTACGTGTTAATTTGATGTGCCAAACGCGGTGATGAACA
CAGTGTGCAGCCTTTCATCCTTCATCATGTGCATGTGAGCACATTTGCCA
ATAAATTGGGATTCGATTCTGTTGGTTCATGGCAAATGGTACGCAGAGTA
TGGTCTTTCTTCCCTTGTGACACATGAAGAGGCGCGTTCCGTTAGATACG
CGTTAAGAACATATACATGTCGCTATTCTCACCCGAAAGGACCGCGACAC
TCTGCTGCAAGCAGACCCCTGTCAGTGGTGCGCCACCTTCCCCGCGGAAT
GGTCATTCGGCGGTCGCACTCGGAGATTCTTTGGTGGTCTACGGCGGTAT
GAATGGACAGGATGGTGTGACGTTCAACGACCTGTTCGAGCTCCGACCCG
GTGGGTATGTCGGCGTGATCTTGTCCGCGGTTCTGCCATCATAGTATCAG
TGCGCTTGTTCCATAACGTGCGGCCGTGTCGTTAAGATTCAATCTCCTCG
CCACAGCGTCTTTTTCGGTAGATTTTGCTCCAAAGTCTAACTGTACAGGA
CCTCAGCAGCGAACCGTAGCTTGATCAACCAAAACACAACCCCTCGCGTC
ACCCAACTGGGATTCATTGTTGTGCAGGATCTACGGAGGGTATGGAGTGG
GTGTCCCTTCCCTGCGTGGACATCCCTCCTCGCAATGCACACACTGCAGT
ACTCGATGGGGAAACCATGATAGTCATCGCAGGGGCTTCCCCGGAGGGAC
AAACGGACGACGTTTTCACCATCGACTTGTCGGATCGTTCAAACTTGGCC
TGTCGGAGAGTGTTCTGCAAGCCGTTCAAATCAGGGACTGGTGAACGACG
TTGTTCGGAAGGCGTTGGAGGAGTACCAGCCGCACGCGAGATGCACTCGA
CCTGTGCTTATAACTCCGAGGGGACGACGGGTGAACGGGCGACTACAATA
TTGGTCATGGGCGGACGTTCAGCTGGGGGTGTGCTTCGTGACCTGTTTGA
GCTCAGAACAGGTACTAATAAACCATTGATTTCTGATAAGAGAACAACGT
GCCAGGCCAGATGTTAAAGATGTTCGAACAAATGAAAATTCAGTCGTCAA
AGTACCAAAATCAGTTGACATTTTCTACTGAAAGTGAGAGAGATCGGCAG
ACTCTGTTAATACGAAGAATGGTTCGGGAGCGAAGTTAAAACAAACGTAG
CGTGAGGGGGAGCGCCAGCGGGAAGCATTTTCTTACTTGCAGTTTTGTAC
GCTTCAGTTCAAATGTTGACGAACATCGTGCCGAATAAATGACGAGGTGC
CTTGGGGGTTGGTGTGCCGCTGTGGGTGCCATGGCTTTTTGGCAAAGTTG
CAGCACCGAAGGGTGCCAAATATGTCGCAAAATTACAATGGAGTGACTGG
AAGAAGTCAACGTCAGAGGGTAGTTGGTTTGTGTGGGTATTGTTGACTCC
ATATGGGTTTGATTTTCCGCCCATAACGTTTTGGAGGAGGAAGCAACAGC
CGTTACAATTGGTGGCTTTGCAGTCCATTTTTCATGCCCAAGGTTTGATG
CTGTAGGATGTTGTATATATCAGGAAAAATGTTGCAACTATCCTCTCTCG
CACGAGAACGCGCAAATCAACGGTTCAGCTTTGCTGTGATCATCGGCCTC
GTTCGCAGTTGTGGCGATCGACGTTTTCTCTCGAAGAACCGCGTGAGCCG
GCCGGTTTTGGGCTTGCCGGCGAGTAGTGTGCCTTTTCTGGCTATTGTGC
CACGAACACCCGTGGTTATCGGTAGTGGGGGTGTTAATAGTCTCACTTTG
AGCAGTGTATGCATCCACTTTGAGCAGCCCCGCGGGATCTGATCGAACAA
AGCGACCCCTGCAAGCCGTGTATGCATCCACTTTGAGCAGCCCCGCGGGA
TCCGATCGAATAGAGCGACCCCTGCAATCCGTGTGCGACTTTGATTGGTT
TTGATTGAAGAAATACCTTGGGGAATCCAACAACGCTGAAATGAAATGGC
GTCGTTTGGAAGTATCGATCCTTCGACTCACTAATCTCTCTGGGTGTAGG
TTTTTTCATTTTGCGAGTATCGTAACTACCCGGCCTCAGCTATTGCGCGG
TGTAGTCGATCAAGGGAATTTAAAATCAGTATAAGCGCGCGAGAGACTAT
CCATATATTCATGTTTCTGTGTGTCACGTCTCTAGGATAGGTCCAATAAA
TACGTCACAGAAATTCCGTTCTTGACGCGAAGCTTTTTCTTCTGCCTGTA
ATAACTCTCACAGATACCTGGACATGGAAGCGATTAAAAGATGCTCCTGT
TGCCCGGTGCGCCCATTCAGCTTGTTTCGTACAAGCCGCAGGGACCATGG
CCATCTACGGGGGATGGGATGGGTAAGTGACTACTGTACGATCACACAGA
TTGGATGCAGATCGCCTCCGTAGTCGGTAACTCTTCTGGGAAACACAGTT
GGCCGAGATCGGCACGAAAGTAAACGTAAATGTGTTGTACCAGTCTGAAA
CGCAGCTTTACGATGGACCCCGCACTACATCCTGCTTGGTCGCCTGTTAA
GAGCGGTTCAGTGAATGAGCACATGAACCTCGACCCAACATTGTGCATCT
TTACTGCGGGGTTCTTTTATGGTATTTGGATGTAGATATGCGATCGTGGT
TGACCATGGTTATTTGGCGTCGTCAGATGCTATGACGCGACGTCATACTA
GAAGGGCTTTATGTCGAGGCATGTGCCCTTCTGTTCAGTGTGCGTACGAT
CCGGTAATCGTGTGTGCTTGGGATCTGTGAGTTGGCTTGGGAAAGCGTTA
TTCAAGAGAATGAGAACAACGGAGAGCAGCAACAACCTGCACCTGTGGTC
GGACAAGAGAGTTCCACACAGCTCAAATGTGATTAATTATGAACGGGTCA
AATCTTTATACACTGGCGTCTTCGGCAGGGCCTAACACTTCCTCTTGAAG
TAGGGATTGGAAATATGATTTGAACGTGCGAAGAATACGAACTCGCCCCA
TGATCATTCTTAAGAACCTAAGAGCACGTTTGGCGCACTCATTGATCTAC
CATCTGGATTGCGCTAGATTGCACCAAGAGTACACTGCTACAGTAGTACC
GCTGACATCCGCCTGCTTGTCTGTTTTAAACAGGGGCACAATCGTGGCCG
ACGATCTTCATCTTTACGATGTAGGATGTGGAGAGTGGACGAAACCAAAA
ATTTCTCCAACACCAGCTGGTCGTTTCGCTCACGCGGCGTGCGCTGTTGG
TTTGGAGGGAGAGATGCTTGTGTTCGGAGGGGTACACCCTGGAGAGGATC
TGGACGATGTTTTGTTGCTGTCTGCCGCTTGACCTACACGCTGCATGTCA
TTGGTTCGAAAAGAGAAGCGGCAAAGCTCAGCCTTTTCAGCAAGCGTCTT
GTTCGGAGAACGAAATCCCCAGCGGTTAAGTTTTGTCTCTGCTGCCCCAA
TCCGTACGTACCCAGTAGGGTGTATCATCTCAGACATGCGATCGAAGTTT
GGAGTAAATAAGCGACTCTCGGGTTGTGAAAGTGAGTGAAACGAAAGCAT
GTAAGATCGAACCGAAGGTGTGCATGTATCAAACAATCAAGAGAGGGAGC
AAGCAGCAGCTGAGACCAGTCATTGTTTGTGGTACTTCGGTACGACATTC
GATCTGGAAGTTATGAAATTTTGAAATTATGTGTGTGTGTGTGGGGGGGT
ATAGTACGTTGTTAGCTGTTAGGGGTCCAAGTCCGCCCCCCCGTTGTATA
TATTGCAGGATCCCGTCATGACCGATGATAATTTTCTTGCAATTGGGGTA
GATGTTGACTCCTAAACCCTGGCTCGTTCATCGGATTTTGAGCATACACG
AAACATTCATCATTTGCATGGGCCCAGACACAGAACCAACGTCGAAACGC
GTTCCGTTCTCTAAAAAGGTACCCACCCCCTCCCTCTGGCCAAAAGTATC
ATCTATTTAAGAGACATATCCATACT

Coding sequence (CDS) from alignment at Scaffold_441:83614..88589+

>EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1086bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCGAGTGATACCAGCACCGGCGCGGTGGCACATCCATCTGTAGG
CGGCATCGGAGACCGATCATCACGTGGTGAAACTTGGGTTTGCAAAACGA
TAGCGGCAAGCTCTTCGACGCAGCAGCCACCTCCCAGAGGGGGATGCTCG
TGGACGAAGGTTGGCTCAAAGTTCGTCCTGTTTGGAGGGGCGGACGAACA
TCAGCAGCACTTGTCCGACATCCACTGCTTTGACGCGGCAATAGGGAAAT
GGGAGAAGACCCCTGTCAGTGGTGCGCCACCTTCCCCGCGGAATGGTCAT
TCGGCGGTCGCACTCGGAGATTCTTTGGTGGTCTACGGCGGTATGAATGG
ACAGGATGGTGTGACGTTCAACGACCTGTTCGAGCTCCGACCCGGATCTA
CGGAGGGTATGGAGTGGGTGTCCCTTCCCTGCGTGGACATCCCTCCTCGC
AATGCACACACTGCAGTACTCGATGGGGAAACCATGATAGTCATCGCAGG
GGCTTCCCCGGAGGGACAAACGGACGACGTTTTCACCATCGACTTGTCGG
ATCGTTCAAACTTGGCCTGTCGGAGAGTGTTCTGCAAGCCGTTCAAATCA
GGGACTGGTGAACGACGTTGTTCGGAAGGCGTTGGAGGAGTACCAGCCGC
ACGCGAGATGCACTCGACCTGTGCTTATAACTCCGAGGGGACGACGGGTG
AACGGGCGACTACAATATTGGTCATGGGCGGACGTTCAGCTGGGGGTGTG
CTTCGTGACCTGTTTGAGCTCAGAACAGATACCTGGACATGGAAGCGATT
AAAAGATGCTCCTGTTGCCCGGTGCGCCCATTCAGCTTGTTTCGTACAAG
CCGCAGGGACCATGGCCATCTACGGGGGATGGGATGGGGGCACAATCGTG
GCCGACGATCTTCATCTTTACGATGTAGGATGTGGAGAGTGGACGAAACC
AAAAATTTCTCCAACACCAGCTGGTCGTTTCGCTCACGCGGCGTGCGCTG
TTGGTTTGGAGGGAGAGATGCTTGTGTTCGGAGGGGTACACCCTGGAGAG
GATCTGGACGATGTTTTGTTGCTGTCTGCCGCTTGA