EsuBft1056_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1056_2a-0001
Unique NameEsuBft1056_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_427contigScaffold_427:281067..282575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1056_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length78
Hectar predicted targeting categoryother localisation
Evalue1.92e-101
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_2aEsuBft1056_2aEctocarpus subulatus male Bft15bgeneScaffold_427 281067..282575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_2a-0001-exonagat-exon-24487Ectocarpus subulatus male Bft15bexonScaffold_427 281067..281088 -
EsuBft1056_2a-0001-exonagat-exon-24486Ectocarpus subulatus male Bft15bexonScaffold_427 281282..281568 -
EsuBft1056_2a-0001-exonagat-exon-24485Ectocarpus subulatus male Bft15bexonScaffold_427 281755..281872 -
EsuBft1056_2a-0001-exonEsuBft1056_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_427 282214..282575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_2a-0001-cdsEsuBft1056_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_427 281067..281088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_2a-0001EsuBft1056_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_427 281067..282575 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1056_2a-0001 ID=EsuBft1056_2a-0001|Name=EsuBft1056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=789bp|location=Sequence derived from alignment at Scaffold_427:281067..282575- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGGGCGGGGTGAGCTCCCAAGGCGAGGTCCATTCTTATCATGGAC
AACTTGCACGCGCAGACCACGGACGAGTTCAATCAAGGAATATCTTGCGA
AGCACTGCAACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACAGACGAG
GTGCAGCCAGTTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTCGG
GAGGCAGATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGG
AAACCGCGTCGTTGACAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGG
ATGGGAGCGGCCATGGCAAGACTCAACAGCCACCTGGCGTACCGATACCG
TCTTTTCGAAAACGACGACGAACAAGGTTTGGAGAACGGCAACGATGAGC
CTGAGGGGCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAG
GGCGTTGACTCCAGCGATAAGACGACGGCGACCGACGAGCTAGCTCTTCT
GGACGACGACGACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGG
GAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAAACCCGTTGCT
CTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGG
GTGGTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGACACTCGCCACC
TGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCGCAAGATG
AAGTTGCCCTTAGACAAGCTCAACAAGGCAGTTTGGTAG
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protein sequence of EsuBft1056_2a-0001

>EsuBft1056_2 ID=EsuBft1056_2|Name=EsuBft1056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MRGRGELPRRGPFLSWTTCTRRPRTSSIKEYLAKHCNTLAWYGPSECTDE
VQPVDAGAGRFLKVEVGRQMDIWLEQSDNLERWETASLTASDRRVLITQW
MGAAMARLNSHLAYRYRLFENDDEQGLENGNDEPEGRAEEGDGGRETLME
GVDSSDKTTATDELALLDDDDSMDPQDPEDEIQGMEIPAGFRIQEAKPVA
LDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKM
KLPLDKLNKAVW
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mRNA from alignment at Scaffold_427:281067..282575-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1056_2a-0001 ID=EsuBft1056_2a-0001|Name=EsuBft1056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1509bp|location=Sequence derived from alignment at Scaffold_427:281067..282575- (Ectocarpus subulatus male Bft15b)
ATGCGTGGGCGGGGTGAGCTCCCAAGGCGAGGTCCATTCTTATCATGGAC
AACTTGCACGCGCAGACCACGGACGAGTTCAATCAAGGAATATCTTGCGA
AGCACTGCAACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACAGACGAG
GTGCAGCCAGTTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTCGG
GAGGCAGATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGG
AAACCGCGTCGTTGACAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGG
ATGGGAGCGGCCATGGCAAGACTCAACAGCCACCTGGCGTACCGATACCG
TCTTTTCGAAAAGTGCGGGATGGCCATGACCGACCGTGGACGGCTCGGGC
GATGATCGAATCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAA
CGATGAAGACAGTAGCGACGACGAACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTTACGATGAAGATAG
TAGCGACGACGAACAAGGTTTGGAGAACGGCAACGATGAGCCTGAGGGGC
GGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTTGAC
TCCAGCGATAAGACGACGGCGGTAAGTTTGTTTTGCACAAAACCATCTCT
TCTTTTTGTTGATGACGATGTCCTTCATGTTGACGTTAGATTGTTTCCGC
GCACGGCTACACTCAAATTATGATAAGTTCAGGTTGAGTTTGGCGACGTG
ACACCCTAACTTCTTGTGTTTCCCGTTGCCTCGTTCGCAGACATCTCTCA
ACCCCAGACCGACGAGCTAGCTCTTCTGGACGACGACGACAGCATGGACC
CACAAGACCCGGAGGATGAGATACAGGGAATGGAGATCCCGGCAGGCTTT
CGTATTCAAGAAGCTAAACCCGTTGCTCTTGACAGATTGCTTTTGCGGCG
TGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAGGGCTGATCACTC
AACAATCTCAGAAGGACACTCGCCACCTGTACGACTACTGTGTGCAGCTG
GAGCTAGACCAGAGTACGCGCAAGATGAAGTTGCCCTTAGACAAGTACAG
CGGAGATTCGGATGCGGCTCTAGGCTCCTGTTTTTTTTTTTTCTTAATAT
CACACAACAAATCCATCTCTATCAATAGAAATAGGTCTAAGATAGATTAG
CAATTAATCCATAGCATGAGCGAAAGCTACCTGCATGTCTACGGTTTCCC
AGACAGCATACAGCGATATCTCCCCTGTGGGTAACAGGCTCAACAAGGCA
GTTTGGTAG
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Coding sequence (CDS) from alignment at Scaffold_427:281067..282575-

>EsuBft1056_2a-0001 ID=EsuBft1056_2a-0001|Name=EsuBft1056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_427:281067..282575- (Ectocarpus subulatus male Bft15b)
ATGCGTGGGCGGGGTGAGCTCCCAAGGCGAGGTCCATTCTTATCATGGAC
AACTTGCACGCGCAGACCACGGACGAGTTCAATCAAGGAATATCTTGCGA
AGCACTGCAACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACAGACGAG
GTGCAGCCAGTTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTCGG
GAGGCAGATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGG
AAACCGCGTCGTTGACAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGG
ATGGGAGCGGCCATGGCAAGACTCAACAGCCACCTGGCGTACCGATACCG
TCTTTTCGAAAACGACGACGAACAAGGTTTGGAGAACGGCAACGATGAGC
CTGAGGGGCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAG
GGCGTTGACTCCAGCGATAAGACGACGGCGACCGACGAGCTAGCTCTTCT
GGACGACGACGACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGG
GAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAAACCCGTTGCT
CTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGG
GTGGTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGACACTCGCCACC
TGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCGCAAGATG
AAGTTGCCCTTAGACAAGCTCAACAAGGCAGTTTGGTAG
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